Wall clock time and date at job start Sat Apr 11 2020 05:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34235 * 116.99746 * 2 1 4 4 O 1.20822 * 119.99798 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99811 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.46602 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.46591 * 180.02562 * 6 5 3 8 8 C 1.36896 * 119.99773 * 273.20891 * 7 6 5 9 9 H 1.08001 * 119.99331 * 129.05180 * 8 7 6 10 10 C 1.39003 * 120.00178 * 309.04974 * 8 7 6 11 11 N 1.31401 * 119.99833 * 359.93281 * 10 8 7 12 12 Si 1.86792 * 119.99966 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47380 * 60.00424 * 12 10 8 14 14 H 1.48497 * 109.47421 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47513 * 300.00414 * 12 10 8 16 16 C 1.34777 * 120.00097 * 93.21555 * 7 6 5 17 17 O 1.21725 * 120.00064 * 2.95191 * 16 7 6 18 18 C 1.46558 * 119.99774 * 182.95368 * 16 7 6 19 19 C 1.36784 * 126.17830 * 174.04462 * 18 16 7 20 20 N 1.30941 * 113.92021 * 179.75675 * 19 18 16 21 21 C 1.29375 * 117.47021 * 0.50606 * 20 19 18 22 22 C 1.50696 * 124.70594 * 179.77089 * 21 20 19 23 23 C 1.53004 * 109.47078 * 59.70022 * 22 21 20 24 24 C 1.52999 * 109.46983 * 299.70186 * 22 21 20 25 25 C 1.53003 * 109.47342 * 179.70050 * 22 21 20 26 26 S 1.70927 * 110.59070 * 359.50952 * 21 20 19 27 27 H 1.08997 * 109.46933 * 299.99672 * 1 2 3 28 28 H 1.08996 * 109.47523 * 60.00327 * 1 2 3 29 29 H 1.09009 * 109.46895 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47168 * 60.00339 * 5 3 2 31 31 H 1.08992 * 109.47288 * 300.00097 * 5 3 2 32 32 H 1.08994 * 109.47497 * 60.00063 * 6 5 3 33 33 H 1.09002 * 109.46987 * 299.99649 * 6 5 3 34 34 H 0.97005 * 119.99664 * 180.02562 * 11 10 8 35 35 H 1.08000 * 123.03884 * 359.97438 * 19 18 16 36 36 H 1.09003 * 109.46997 * 60.00115 * 23 22 21 37 37 H 1.08997 * 109.46780 * 300.00217 * 23 22 21 38 38 H 1.08999 * 109.47090 * 179.97438 * 23 22 21 39 39 H 1.09008 * 109.47205 * 179.97438 * 24 22 21 40 40 H 1.08998 * 109.47383 * 299.99547 * 24 22 21 41 41 H 1.09005 * 109.47556 * 60.00097 * 24 22 21 42 42 H 1.08996 * 109.46967 * 300.00502 * 25 22 21 43 43 H 1.09006 * 109.46695 * 59.99901 * 25 22 21 44 44 H 1.08994 * 109.47138 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0000 2.7422 0.0011 7 7 5.4630 2.8189 0.0011 8 6 6.1500 2.7880 1.1847 9 1 6.9678 2.0949 1.3164 10 6 5.7953 3.6487 2.2170 11 7 4.8012 4.4929 2.0561 12 14 6.7323 3.6060 3.8323 13 1 8.1631 3.9157 3.5830 14 1 6.1621 4.6137 4.7621 15 1 6.6163 2.2544 4.4363 16 6 6.1325 2.9200 -1.1643 17 8 5.5200 3.0017 -2.2130 18 6 7.5980 2.9315 -1.1688 19 6 8.4022 2.9138 -2.2751 20 7 9.6825 2.9349 -2.0012 21 6 10.0257 2.9589 -0.7540 22 6 11.4477 2.9805 -0.2557 23 6 12.1581 4.2238 -0.7945 24 6 12.1771 1.7260 -0.7406 25 6 11.4516 3.0135 1.2740 26 16 8.6424 2.9700 0.2499 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 3.9564 0.7807 -0.8892 31 1 3.9557 0.7811 0.8907 32 1 3.6099 3.2361 0.8910 33 1 3.6106 3.2365 -0.8890 34 1 4.5539 5.0938 2.7763 35 1 8.0161 2.8884 -3.2834 36 1 11.6385 5.1176 -0.4490 37 1 12.1553 4.2002 -1.8842 38 1 13.1865 4.2397 -0.4337 39 1 13.2058 1.7418 -0.3805 40 1 11.6710 0.8402 -0.3567 41 1 12.1743 1.7024 -1.8304 42 1 10.9319 3.9072 1.6194 43 1 10.9454 2.1277 1.6578 44 1 12.4801 3.0287 1.6344 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871341687.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:29 Heat of formation + Delta-G solvation = -91.877666 kcal Electronic energy + Delta-G solvation = -27768.026783 eV Core-core repulsion = 23812.167092 eV Total energy + Delta-G solvation = -3955.859691 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.10480 -39.27624 -38.49459 -36.34215 -36.12257 -35.07282 -32.28833 -31.05487 -29.09220 -27.53639 -27.28800 -27.14503 -25.55287 -25.18725 -23.40928 -20.97769 -20.31109 -19.86285 -18.75316 -17.44330 -17.31697 -16.54064 -16.29369 -16.21592 -15.69342 -15.04614 -14.65308 -14.54351 -14.16692 -13.93719 -13.91178 -13.68604 -13.44617 -13.10376 -12.87468 -12.71815 -12.27852 -12.19878 -12.14069 -11.97243 -11.85017 -11.58081 -11.41140 -11.28268 -11.27204 -11.17975 -10.86177 -10.82964 -10.63003 -10.58468 -10.45073 -10.19109 -10.08493 -9.57432 -8.87976 -8.64610 -8.50817 -8.10791 -7.62338 -6.66345 -4.61546 1.13081 2.17610 2.61766 2.66982 2.96222 2.99205 3.03508 3.04076 3.32530 3.81486 4.22958 4.45099 4.60382 4.69944 4.96864 5.05394 5.20622 5.24746 5.27608 5.28205 5.59596 5.63314 5.69999 5.72181 5.74094 5.82917 5.84782 5.94390 5.98117 6.05107 6.10452 6.17221 6.20108 6.25152 6.40039 6.40475 6.67657 6.78276 6.90485 6.98394 7.30086 7.70065 7.98755 8.13289 8.44119 8.68660 9.14779 9.60131 10.29941 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014114 B = 0.003716 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.337723 B = 7532.792876 C = 8722.007527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.467 3.533 4 O -0.505 6.505 5 C -0.124 4.124 6 C 0.127 3.873 7 N -0.434 5.434 8 C -0.350 4.350 9 H 0.098 0.902 10 C 0.065 3.935 11 N -0.837 5.837 12 Si 0.904 3.096 13 H -0.257 1.257 14 H -0.276 1.276 15 H -0.264 1.264 16 C 0.552 3.448 17 O -0.587 6.587 18 C -0.257 4.257 19 C 0.074 3.926 20 N -0.487 5.487 21 C -0.039 4.039 22 C 0.014 3.986 23 C -0.132 4.132 24 C -0.130 4.130 25 C -0.154 4.154 26 S 0.265 5.735 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.119 0.881 33 H 0.070 0.930 34 H 0.280 0.720 35 H 0.171 0.829 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.943 -5.884 2.428 8.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.310 3.690 4 O -0.391 6.391 5 C -0.163 4.163 6 C 0.003 3.997 7 N -0.152 5.152 8 C -0.484 4.484 9 H 0.115 0.885 10 C -0.147 4.147 11 N -0.469 5.469 12 Si 0.728 3.272 13 H -0.181 1.181 14 H -0.201 1.201 15 H -0.188 1.188 16 C 0.340 3.660 17 O -0.473 6.473 18 C -0.382 4.382 19 C -0.085 4.085 20 N -0.201 5.201 21 C -0.311 4.311 22 C 0.011 3.989 23 C -0.191 4.191 24 C -0.189 4.189 25 C -0.212 4.212 26 S 0.529 5.471 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.125 0.875 32 H 0.137 0.863 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.188 0.812 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.616 -5.331 2.741 8.214 hybrid contribution -0.340 0.072 -0.130 0.371 sum 5.276 -5.259 2.611 7.894 Atomic orbital electron populations 1.23173 0.77298 1.03059 1.02358 1.86540 1.22793 1.34361 1.84644 1.24019 0.92324 0.80914 0.71770 1.90654 1.67253 1.36223 1.45018 1.21883 0.85979 1.03157 1.05278 1.21298 0.81581 0.91112 1.05661 1.43109 1.04687 1.63017 1.04410 1.19260 1.16097 1.21357 0.91706 0.88522 1.25682 0.95562 0.93338 1.00131 1.69719 1.24796 1.18455 1.33948 0.86309 0.80795 0.79205 0.80891 1.18127 1.20092 1.18832 1.17298 0.84472 0.79508 0.84678 1.90688 1.68572 1.55900 1.32114 1.26058 0.99469 1.15834 0.96853 1.22132 0.86403 1.00545 0.99393 1.66004 1.17705 1.16614 1.19781 1.28259 1.03376 1.04003 0.95416 1.19040 0.87947 0.97056 0.94863 1.21804 0.99167 0.96235 1.01846 1.21792 0.99043 0.96058 1.02025 1.22012 1.02507 1.02941 0.93710 1.85060 0.91907 1.62737 1.07367 0.92137 0.92157 0.88603 0.88604 0.87521 0.86328 0.91184 0.90911 0.81181 0.92717 0.91760 0.92401 0.92405 0.92703 0.91784 0.91804 0.91821 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 16 2 O -0.37 -5.80 10.57 -39.27 -0.41 -6.21 16 3 C 0.47 8.68 7.96 36.01 0.29 8.96 16 4 O -0.50 -10.68 15.73 -18.75 -0.29 -10.97 16 5 C -0.12 -2.37 6.13 -27.88 -0.17 -2.54 16 6 C 0.13 2.93 4.37 -4.04 -0.02 2.91 16 7 N -0.43 -10.33 2.46 -116.33 -0.29 -10.62 16 8 C -0.35 -7.99 6.78 -15.01 -0.10 -8.09 16 9 H 0.10 2.09 5.50 -34.67 -0.19 1.90 16 10 C 0.07 1.48 5.34 -17.45 -0.09 1.39 16 11 N -0.84 -20.52 11.24 55.50 0.62 -19.90 16 12 Si 0.90 17.25 29.55 -169.99 -5.02 12.23 16 13 H -0.26 -4.65 7.11 56.52 0.40 -4.24 16 14 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 15 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 16 C 0.55 13.48 7.60 -12.91 -0.10 13.38 16 17 O -0.59 -15.50 16.39 5.17 0.08 -15.41 16 18 C -0.26 -5.62 6.35 -36.76 -0.23 -5.86 16 19 C 0.07 1.51 11.17 -18.46 -0.21 1.30 16 20 N -0.49 -9.27 10.48 -11.25 -0.12 -9.39 16 21 C -0.04 -0.67 5.77 -13.31 -0.08 -0.74 16 22 C 0.01 0.19 0.99 -155.66 -0.15 0.04 16 23 C -0.13 -1.65 8.45 37.16 0.31 -1.33 16 24 C -0.13 -1.57 8.45 37.16 0.31 -1.26 16 25 C -0.15 -1.84 7.53 37.16 0.28 -1.56 16 26 S 0.26 4.99 16.94 -107.50 -1.82 3.17 16 27 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 28 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 29 H 0.10 0.82 8.14 -51.92 -0.42 0.40 16 30 H 0.10 1.78 8.14 -51.93 -0.42 1.35 16 31 H 0.11 1.91 8.14 -51.93 -0.42 1.48 16 32 H 0.12 2.94 5.67 -51.93 -0.29 2.64 16 33 H 0.07 1.74 7.24 -51.93 -0.38 1.36 16 34 H 0.28 6.49 8.31 -40.82 -0.34 6.15 16 35 H 0.17 3.31 8.06 -52.49 -0.42 2.89 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.80 7.91 -51.93 -0.41 0.39 16 43 H 0.06 0.76 7.91 -51.93 -0.41 0.35 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 380.40 15.07 5.73 5.73 Total: -1.00 -28.82 380.40 -6.72 -35.54 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -6.31 Total: 7.73 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 1.11 Total: 8.09 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.22 Total: -39.91 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.63 Total: -32.60 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.02 Total: 12.23 kcal Atomic # 16 Polarization: 4.99 SS G_CDS: -1.82 Total: 3.17 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.82 -6.72 -35.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341687.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.334 kcal (2) G-P(sol) polarization free energy of solvation -28.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds