Wall clock time and date at job start Sat Apr 11 2020 05:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34235 * 116.99746 * 2 1 4 4 O 1.20822 * 119.99798 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99811 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.46602 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.46591 * 180.02562 * 6 5 3 8 8 C 1.36896 * 119.99773 * 273.20891 * 7 6 5 9 9 H 1.08001 * 119.99331 * 129.05180 * 8 7 6 10 10 C 1.39003 * 120.00178 * 309.04974 * 8 7 6 11 11 N 1.31401 * 119.99833 * 359.93281 * 10 8 7 12 12 Si 1.86792 * 119.99966 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47380 * 60.00424 * 12 10 8 14 14 H 1.48497 * 109.47421 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47513 * 300.00414 * 12 10 8 16 16 C 1.34777 * 120.00097 * 93.21555 * 7 6 5 17 17 O 1.21725 * 120.00064 * 2.95191 * 16 7 6 18 18 C 1.46558 * 119.99774 * 182.95368 * 16 7 6 19 19 C 1.36784 * 126.17830 * 174.04462 * 18 16 7 20 20 N 1.30941 * 113.92021 * 179.75675 * 19 18 16 21 21 C 1.29375 * 117.47021 * 0.50606 * 20 19 18 22 22 C 1.50696 * 124.70594 * 179.77089 * 21 20 19 23 23 C 1.53004 * 109.47078 * 59.70022 * 22 21 20 24 24 C 1.52999 * 109.46983 * 299.70186 * 22 21 20 25 25 C 1.53003 * 109.47342 * 179.70050 * 22 21 20 26 26 S 1.70927 * 110.59070 * 359.50952 * 21 20 19 27 27 H 1.08997 * 109.46933 * 299.99672 * 1 2 3 28 28 H 1.08996 * 109.47523 * 60.00327 * 1 2 3 29 29 H 1.09009 * 109.46895 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47168 * 60.00339 * 5 3 2 31 31 H 1.08992 * 109.47288 * 300.00097 * 5 3 2 32 32 H 1.08994 * 109.47497 * 60.00063 * 6 5 3 33 33 H 1.09002 * 109.46987 * 299.99649 * 6 5 3 34 34 H 0.97005 * 119.99664 * 180.02562 * 11 10 8 35 35 H 1.08000 * 123.03884 * 359.97438 * 19 18 16 36 36 H 1.09003 * 109.46997 * 60.00115 * 23 22 21 37 37 H 1.08997 * 109.46780 * 300.00217 * 23 22 21 38 38 H 1.08999 * 109.47090 * 179.97438 * 23 22 21 39 39 H 1.09008 * 109.47205 * 179.97438 * 24 22 21 40 40 H 1.08998 * 109.47383 * 299.99547 * 24 22 21 41 41 H 1.09005 * 109.47556 * 60.00097 * 24 22 21 42 42 H 1.08996 * 109.46967 * 300.00502 * 25 22 21 43 43 H 1.09006 * 109.46695 * 59.99901 * 25 22 21 44 44 H 1.08994 * 109.47138 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0000 2.7422 0.0011 7 7 5.4630 2.8189 0.0011 8 6 6.1500 2.7880 1.1847 9 1 6.9678 2.0949 1.3164 10 6 5.7953 3.6487 2.2170 11 7 4.8012 4.4929 2.0561 12 14 6.7323 3.6060 3.8323 13 1 8.1631 3.9157 3.5830 14 1 6.1621 4.6137 4.7621 15 1 6.6163 2.2544 4.4363 16 6 6.1325 2.9200 -1.1643 17 8 5.5200 3.0017 -2.2130 18 6 7.5980 2.9315 -1.1688 19 6 8.4022 2.9138 -2.2751 20 7 9.6825 2.9349 -2.0012 21 6 10.0257 2.9589 -0.7540 22 6 11.4477 2.9805 -0.2557 23 6 12.1581 4.2238 -0.7945 24 6 12.1771 1.7260 -0.7406 25 6 11.4516 3.0135 1.2740 26 16 8.6424 2.9700 0.2499 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 3.9564 0.7807 -0.8892 31 1 3.9557 0.7811 0.8907 32 1 3.6099 3.2361 0.8910 33 1 3.6106 3.2365 -0.8890 34 1 4.5539 5.0938 2.7763 35 1 8.0161 2.8884 -3.2834 36 1 11.6385 5.1176 -0.4490 37 1 12.1553 4.2002 -1.8842 38 1 13.1865 4.2397 -0.4337 39 1 13.2058 1.7418 -0.3805 40 1 11.6710 0.8402 -0.3567 41 1 12.1743 1.7024 -1.8304 42 1 10.9319 3.9072 1.6194 43 1 10.9454 2.1277 1.6578 44 1 12.4801 3.0287 1.6344 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871341687.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:28 Heat of formation + Delta-G solvation = -108.036283 kcal Electronic energy + Delta-G solvation = -27768.727473 eV Core-core repulsion = 23812.167092 eV Total energy + Delta-G solvation = -3956.560381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.58945 -40.87834 -40.15338 -37.71051 -37.39030 -36.88692 -34.03710 -32.77099 -30.64450 -28.73071 -28.23268 -28.09619 -27.28129 -26.71016 -25.02263 -22.49531 -21.68660 -21.53055 -20.40235 -18.97285 -18.73833 -18.17010 -17.75388 -17.64053 -17.27979 -16.66729 -16.25078 -16.00576 -15.57071 -15.37070 -15.22632 -15.09770 -14.77946 -14.44489 -14.30079 -14.23328 -13.79816 -13.74925 -13.21778 -13.15204 -13.00164 -12.98511 -12.80963 -12.75053 -12.54397 -12.45667 -12.16012 -12.00440 -11.99257 -11.88101 -11.82089 -11.79952 -11.63273 -11.28620 -10.71111 -10.23134 -10.08430 -9.73751 -9.36844 -8.40905 -6.43558 -0.44568 0.62683 1.11479 1.12400 1.45794 1.47937 1.56670 1.61239 1.75718 2.21925 2.45857 2.84131 2.95421 3.22537 3.80481 3.90715 4.05776 4.06262 4.12071 4.19974 4.30044 4.30870 4.35729 4.47860 4.56928 4.58874 4.68457 4.77779 4.81507 4.91597 4.94590 5.02885 5.03313 5.09225 5.19198 5.20952 5.27427 5.36664 5.44093 5.44236 5.50244 5.89552 6.19489 6.68191 6.89343 6.90532 7.31243 7.78097 8.57141 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014114 B = 0.003716 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.337723 B = 7532.792876 C = 8722.007527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.475 3.525 4 O -0.537 6.537 5 C -0.114 4.114 6 C 0.132 3.868 7 N -0.439 5.439 8 C -0.362 4.362 9 H 0.111 0.889 10 C 0.028 3.972 11 N -0.878 5.878 12 Si 0.956 3.044 13 H -0.237 1.237 14 H -0.281 1.281 15 H -0.250 1.250 16 C 0.539 3.461 17 O -0.623 6.623 18 C -0.300 4.300 19 C 0.082 3.918 20 N -0.499 5.499 21 C -0.015 4.015 22 C 0.007 3.993 23 C -0.129 4.129 24 C -0.127 4.127 25 C -0.156 4.156 26 S 0.281 5.719 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.138 0.862 30 H 0.101 0.899 31 H 0.122 0.878 32 H 0.101 0.899 33 H 0.038 0.962 34 H 0.280 0.720 35 H 0.171 0.829 36 H 0.046 0.954 37 H 0.050 0.950 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.736 -7.334 4.186 12.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.319 3.681 4 O -0.426 6.426 5 C -0.152 4.152 6 C 0.008 3.992 7 N -0.156 5.156 8 C -0.494 4.494 9 H 0.128 0.872 10 C -0.180 4.180 11 N -0.511 5.511 12 Si 0.776 3.224 13 H -0.160 1.160 14 H -0.206 1.206 15 H -0.174 1.174 16 C 0.329 3.671 17 O -0.512 6.512 18 C -0.425 4.425 19 C -0.077 4.077 20 N -0.213 5.213 21 C -0.287 4.287 22 C 0.004 3.996 23 C -0.188 4.188 24 C -0.186 4.186 25 C -0.214 4.214 26 S 0.546 5.454 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.156 0.844 30 H 0.119 0.881 31 H 0.140 0.860 32 H 0.119 0.881 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.189 0.811 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.388 -6.819 4.523 11.718 hybrid contribution -1.138 0.491 -0.742 1.445 sum 7.250 -6.328 3.780 10.339 Atomic orbital electron populations 1.23586 0.74733 1.05883 1.02462 1.86508 1.25176 1.32306 1.83848 1.23768 0.92013 0.81298 0.71066 1.90644 1.67822 1.37478 1.46692 1.21645 0.86952 1.00435 1.06196 1.21081 0.81636 0.93370 1.03088 1.43296 1.04877 1.62550 1.04838 1.19604 1.16665 1.21833 0.91266 0.87237 1.26497 0.95895 0.92524 1.03115 1.69857 1.26574 1.19637 1.35046 0.85517 0.80499 0.79661 0.76744 1.15964 1.20635 1.17375 1.17694 0.85726 0.79291 0.84394 1.90636 1.69692 1.57740 1.33151 1.25901 0.98624 1.18998 0.98964 1.22269 0.86933 0.99193 0.99341 1.66115 1.16673 1.17932 1.20537 1.29004 1.04861 1.00468 0.94403 1.19391 0.85362 0.98562 0.96286 1.21808 1.00883 0.95076 1.01045 1.21787 1.00695 0.94855 1.01230 1.22073 1.04691 1.02616 0.91993 1.84687 0.91573 1.62778 1.06343 0.92022 0.92191 0.84395 0.88100 0.86001 0.88146 0.94300 0.91003 0.81146 0.93527 0.93048 0.89019 0.89103 0.92906 0.93085 0.92530 0.91763 0.88044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.79 16 2 O -0.36 -11.16 10.57 -51.47 -0.54 -11.70 16 3 C 0.47 17.97 7.96 71.24 0.57 18.53 16 4 O -0.54 -23.55 15.73 21.97 0.35 -23.20 16 5 C -0.11 -4.46 6.13 29.85 0.18 -4.28 16 6 C 0.13 6.42 4.37 86.38 0.38 6.79 16 7 N -0.44 -21.69 2.46 -640.17 -1.57 -23.26 16 8 C -0.36 -16.65 6.78 84.09 0.57 -16.08 16 9 H 0.11 4.68 5.50 -14.23 -0.08 4.60 16 10 C 0.03 1.27 5.34 84.94 0.45 1.72 16 11 N -0.88 -44.42 11.24 21.67 0.24 -44.17 16 12 Si 0.96 34.16 29.55 68.60 2.03 36.19 16 13 H -0.24 -7.62 7.11 99.48 0.71 -6.91 16 14 H -0.28 -10.24 7.11 99.48 0.71 -9.54 16 15 H -0.25 -8.37 7.11 99.48 0.71 -7.66 16 16 C 0.54 27.50 7.60 86.41 0.66 28.16 16 17 O -0.62 -34.83 16.39 -4.43 -0.07 -34.90 16 18 C -0.30 -13.40 6.35 24.10 0.15 -13.24 16 19 C 0.08 3.41 11.17 84.48 0.94 4.35 16 20 N -0.50 -18.60 10.48 -189.51 -1.99 -20.58 16 21 C -0.01 -0.49 5.77 88.47 0.51 0.02 16 22 C 0.01 0.18 0.99 -52.93 -0.05 0.12 16 23 C -0.13 -2.80 8.45 71.98 0.61 -2.19 16 24 C -0.13 -2.60 8.45 71.98 0.61 -1.99 16 25 C -0.16 -3.08 7.53 71.98 0.54 -2.53 16 26 S 0.28 10.32 16.94 -56.49 -0.96 9.37 16 27 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 28 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 29 H 0.14 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16 31 H 0.12 4.38 8.14 -2.39 -0.02 4.36 16 32 H 0.10 5.27 5.67 -2.39 -0.01 5.25 16 33 H 0.04 2.08 7.24 -2.39 -0.02 2.06 16 34 H 0.28 13.39 8.31 -92.70 -0.77 12.62 16 35 H 0.17 6.86 8.06 -2.91 -0.02 6.84 16 36 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.06 1.21 7.91 -2.39 -0.02 1.20 16 43 H 0.06 1.27 7.91 -2.38 -0.02 1.25 16 44 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -65.75 380.40 5.75 -60.00 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: 0.95 Total: 31.08 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: 7.32 Total: 21.18 kcal Atomic # 7 Polarization: -84.70 SS G_CDS: -3.31 Total: -88.01 kcal Atomic # 8 Polarization: -69.53 SS G_CDS: -0.27 Total: -69.80 kcal Atomic # 14 Polarization: 34.16 SS G_CDS: 2.03 Total: 36.19 kcal Atomic # 16 Polarization: 10.32 SS G_CDS: -0.96 Total: 9.37 kcal Total: -65.75 5.75 -60.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341687.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.036 kcal (2) G-P(sol) polarization free energy of solvation -65.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds