Wall clock time and date at job start Sat Apr 11 2020 05:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34229 * 117.00245 * 2 1 4 4 O 1.20822 * 120.00200 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99877 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.47128 * 179.97438 * 5 3 2 7 7 N 1.46499 * 109.47368 * 180.02562 * 6 5 3 8 8 C 1.36896 * 120.00102 * 95.78986 * 7 6 5 9 9 H 1.07997 * 119.99493 * 217.48926 * 8 7 6 10 10 C 1.39004 * 119.99821 * 37.21077 * 8 7 6 11 11 N 1.31396 * 119.99921 * 20.11558 * 10 8 7 12 12 Si 1.86803 * 119.99719 * 200.10879 * 10 8 7 13 13 H 1.48492 * 109.47364 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46485 * 120.00589 * 12 10 8 15 15 H 1.48497 * 109.47064 * 240.00047 * 12 10 8 16 16 C 1.34781 * 120.00151 * 275.78872 * 7 6 5 17 17 O 1.21732 * 119.99804 * 356.09918 * 16 7 6 18 18 C 1.46552 * 120.00085 * 176.10178 * 16 7 6 19 19 S 1.76215 * 126.18257 * 88.58505 * 18 16 7 20 20 C 1.70918 * 90.37532 * 179.97438 * 19 18 16 21 21 N 1.29371 * 110.59681 * 359.97438 * 20 19 18 22 22 C 1.30944 * 117.46980 * 359.73381 * 21 20 19 23 23 C 1.50697 * 123.04397 * 180.32192 * 22 21 20 24 24 C 1.53004 * 109.47013 * 241.73528 * 23 22 21 25 25 C 1.53003 * 109.47178 * 1.73254 * 23 22 21 26 26 C 1.52999 * 109.47199 * 121.73672 * 23 22 21 27 27 H 1.09005 * 109.46800 * 60.00299 * 1 2 3 28 28 H 1.08994 * 109.47557 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46946 * 300.00357 * 1 2 3 30 30 H 1.09001 * 109.47111 * 60.00447 * 5 3 2 31 31 H 1.09001 * 109.47669 * 300.00256 * 5 3 2 32 32 H 1.09003 * 109.47194 * 60.00161 * 6 5 3 33 33 H 1.09001 * 109.47121 * 300.00672 * 6 5 3 34 34 H 0.97003 * 119.99821 * 179.97438 * 11 10 8 35 35 H 1.08006 * 124.70205 * 180.02562 * 20 19 18 36 36 H 1.08994 * 109.47321 * 59.18003 * 24 23 22 37 37 H 1.08997 * 109.47032 * 179.18503 * 24 23 22 38 38 H 1.09005 * 109.47007 * 299.18482 * 24 23 22 39 39 H 1.08995 * 109.46966 * 60.00192 * 25 23 22 40 40 H 1.09000 * 109.47256 * 179.97438 * 25 23 22 41 41 H 1.09003 * 109.47042 * 300.00120 * 25 23 22 42 42 H 1.08994 * 109.47351 * 65.74328 * 26 23 22 43 43 H 1.09003 * 109.47005 * 185.74922 * 26 23 22 44 44 H 1.08998 * 109.46963 * 305.74042 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.0003 2.7419 -0.0002 7 7 5.4632 2.8185 -0.0002 8 6 6.1405 2.9732 -1.1798 9 1 7.0811 2.4650 -1.3330 10 6 5.6148 3.7796 -2.1825 11 7 4.7117 4.6879 -1.8893 12 14 6.1924 3.5723 -3.9469 13 1 7.2064 2.4893 -4.0118 14 1 5.0354 3.2189 -4.8081 15 1 6.7941 4.8435 -4.4234 16 6 6.1424 2.7368 1.1611 17 8 5.5385 2.6709 2.2160 18 6 7.6079 2.7275 1.1538 19 16 8.6575 4.1419 1.2079 20 6 10.0370 3.1340 1.1601 21 7 9.6894 1.8888 1.1106 22 6 8.4081 1.6189 1.1108 23 6 7.8642 0.2144 1.0634 24 6 7.0330 0.0320 -0.2082 25 6 9.0250 -0.7823 1.0612 26 6 6.9822 -0.0326 2.2890 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.9564 0.7805 -0.8892 31 1 3.9558 0.7808 0.8908 32 1 3.6102 3.2366 0.8893 33 1 3.6108 3.2355 -0.8906 34 1 4.3451 5.2509 -2.5890 35 1 11.0575 3.4875 1.1707 36 1 7.6576 0.2222 -1.0809 37 1 6.6515 -0.9882 -0.2497 38 1 6.1976 0.7322 -0.1998 39 1 9.6171 -0.6524 1.9670 40 1 8.6316 -1.7983 1.0273 41 1 9.6533 -0.6063 0.1880 42 1 6.1014 0.6073 2.2376 43 1 6.6718 -1.0773 2.3086 44 1 7.5452 0.1960 3.1938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871341886.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:32 Heat of formation + Delta-G solvation = -75.828758 kcal Electronic energy + Delta-G solvation = -29255.888195 eV Core-core repulsion = 25300.724436 eV Total energy + Delta-G solvation = -3955.163758 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.22586 -39.93197 -38.31689 -36.24179 -35.55197 -35.10150 -32.14762 -31.13283 -29.36075 -27.54323 -26.95440 -26.75175 -25.33732 -25.10071 -23.47268 -21.30395 -20.46264 -19.84481 -18.57299 -17.44521 -17.31695 -16.63134 -16.32248 -16.18550 -15.86350 -14.98071 -14.71745 -14.31432 -14.26640 -14.09485 -13.77985 -13.58111 -13.21207 -13.05309 -12.84775 -12.64122 -12.30799 -12.07570 -11.87584 -11.85386 -11.75637 -11.58383 -11.37323 -11.22960 -11.14714 -10.76528 -10.59514 -10.52462 -10.50152 -10.43901 -10.20814 -10.11703 -10.02882 -9.42483 -9.20174 -8.92850 -8.68218 -8.15602 -7.75922 -6.55303 -4.26466 1.13530 1.77246 2.24388 2.59809 2.96815 3.02198 3.14364 3.17576 3.25639 3.74563 3.97951 4.53216 4.62095 4.82310 5.18926 5.21250 5.26145 5.26971 5.34272 5.43681 5.58234 5.67775 5.72702 5.75160 5.89294 6.04714 6.08559 6.12323 6.14909 6.22255 6.30805 6.35590 6.45576 6.54507 6.65337 6.70453 6.76927 6.84662 6.93636 7.17727 7.32840 7.63886 8.10816 8.17865 8.19832 8.86395 9.19505 9.62927 10.46658 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009897 B = 0.005401 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.455874 B = 5182.756905 C = 6475.683395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.467 3.533 4 O -0.504 6.504 5 C -0.128 4.128 6 C 0.128 3.872 7 N -0.414 5.414 8 C -0.348 4.348 9 H 0.096 0.904 10 C 0.051 3.949 11 N -0.846 5.846 12 Si 0.909 3.091 13 H -0.265 1.265 14 H -0.277 1.277 15 H -0.279 1.279 16 C 0.540 3.460 17 O -0.583 6.583 18 C -0.194 4.194 19 S 0.178 5.822 20 C -0.022 4.022 21 N -0.461 5.461 22 C 0.086 3.914 23 C 0.010 3.990 24 C -0.153 4.153 25 C -0.123 4.123 26 C -0.148 4.148 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.119 0.881 34 H 0.273 0.727 35 H 0.192 0.808 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.079 0.921 43 H 0.054 0.946 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.206 -7.169 1.462 7.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.282 6.282 3 C 0.310 3.690 4 O -0.391 6.391 5 C -0.167 4.167 6 C 0.004 3.996 7 N -0.131 5.131 8 C -0.476 4.476 9 H 0.113 0.887 10 C -0.157 4.157 11 N -0.481 5.481 12 Si 0.734 3.266 13 H -0.189 1.189 14 H -0.202 1.202 15 H -0.204 1.204 16 C 0.327 3.673 17 O -0.469 6.469 18 C -0.319 4.319 19 S 0.432 5.568 20 C -0.317 4.317 21 N -0.174 5.174 22 C -0.050 4.050 23 C 0.007 3.993 24 C -0.211 4.211 25 C -0.181 4.181 26 C -0.206 4.206 27 H 0.079 0.921 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.124 0.876 31 H 0.118 0.882 32 H 0.087 0.913 33 H 0.136 0.864 34 H 0.084 0.916 35 H 0.209 0.791 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.104 0.896 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.886 -5.988 1.886 6.555 hybrid contribution -0.063 -0.661 -1.112 1.295 sum 1.824 -6.649 0.773 6.937 Atomic orbital electron populations 1.23178 0.77252 1.03093 1.02371 1.86534 1.22814 1.34284 1.84617 1.23967 0.92265 0.80962 0.71836 1.90660 1.67240 1.36200 1.44963 1.21941 0.86265 1.03116 1.05398 1.21234 0.81434 0.91077 1.05822 1.43345 1.04502 1.60231 1.05013 1.19494 1.07697 1.29133 0.91269 0.88675 1.25389 0.96532 0.93336 1.00476 1.69929 1.27795 1.16350 1.34009 0.86151 0.79105 0.78813 0.82508 1.18873 1.20230 1.20427 1.16895 0.84088 0.81903 0.84406 1.90706 1.68851 1.56186 1.31157 1.25608 1.00042 0.95487 1.10734 1.83907 0.97421 1.10826 1.64599 1.28246 1.04019 0.91820 1.07636 1.65779 1.17399 1.18995 1.15195 1.20495 0.86250 0.95660 1.02594 1.19087 0.95338 0.87957 0.96884 1.22200 1.01084 1.02101 0.95708 1.21669 0.97153 0.96969 1.02270 1.22072 1.00669 1.01624 0.96222 0.92140 0.88569 0.92131 0.87568 0.88205 0.91310 0.86354 0.91610 0.79080 0.92559 0.92756 0.89644 0.92727 0.93175 0.92437 0.90266 0.92666 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.48 16 2 O -0.37 -5.69 10.56 -39.26 -0.41 -6.11 16 3 C 0.47 8.55 7.96 36.01 0.29 8.84 16 4 O -0.50 -10.55 15.73 -18.75 -0.29 -10.84 16 5 C -0.13 -2.39 5.31 -27.88 -0.15 -2.54 16 6 C 0.13 2.88 4.20 -4.04 -0.02 2.87 16 7 N -0.41 -9.51 1.59 -116.34 -0.18 -9.69 16 8 C -0.35 -8.09 7.51 -15.01 -0.11 -8.21 16 9 H 0.10 2.22 6.42 -52.49 -0.34 1.88 16 10 C 0.05 1.20 4.93 -17.45 -0.09 1.12 16 11 N -0.85 -21.18 11.44 55.50 0.64 -20.55 16 12 Si 0.91 18.57 29.60 -169.99 -5.03 13.54 16 13 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 14 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 15 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 16 C 0.54 12.42 4.77 -12.91 -0.06 12.36 16 17 O -0.58 -14.51 15.11 5.16 0.08 -14.43 16 18 C -0.19 -4.04 4.43 -36.76 -0.16 -4.20 16 19 S 0.18 3.15 23.21 -107.50 -2.49 0.65 16 20 C -0.02 -0.35 12.21 51.73 0.63 0.29 16 21 N -0.46 -8.21 9.54 -11.29 -0.11 -8.32 16 22 C 0.09 1.64 5.48 -83.50 -0.46 1.18 16 23 C 0.01 0.17 0.76 -155.66 -0.12 0.05 16 24 C -0.15 -2.61 7.50 37.16 0.28 -2.33 16 25 C -0.12 -1.82 7.81 37.16 0.29 -1.53 16 26 C -0.15 -2.51 8.18 37.16 0.30 -2.20 16 27 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 28 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 30 H 0.11 1.85 8.03 -51.93 -0.42 1.43 16 31 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 32 H 0.07 1.67 7.51 -51.93 -0.39 1.29 16 33 H 0.12 2.90 5.48 -51.93 -0.28 2.61 16 34 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 35 H 0.19 2.15 8.06 -52.48 -0.42 1.73 16 36 H 0.06 0.98 8.00 -51.93 -0.42 0.56 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 1.62 3.32 -51.93 -0.17 1.44 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.87 8.11 -51.93 -0.42 0.44 16 42 H 0.08 1.54 5.01 -51.93 -0.26 1.28 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 371.20 15.07 5.59 5.59 Total: -1.00 -28.99 371.20 -6.59 -35.58 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.06 Total: 7.41 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 1.69 Total: 7.17 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.34 Total: -38.56 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.63 Total: -31.38 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -2.49 Total: 0.65 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.99 -6.59 -35.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341886.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.254 kcal (2) G-P(sol) polarization free energy of solvation -28.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds