Wall clock time and date at job start Sat Apr 11 2020 05:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47128 * 2 1 4 4 C 1.53001 * 109.46917 * 120.00329 * 2 1 3 5 5 S 1.81405 * 109.46933 * 174.99985 * 4 2 1 6 6 O 1.42099 * 108.58013 * 65.51193 * 5 4 2 7 7 O 1.42100 * 108.57623 * 294.48591 * 5 4 2 8 8 C 1.81401 * 101.91978 * 179.97438 * 5 4 2 9 9 C 1.53004 * 109.46938 * 179.97438 * 8 5 4 10 10 C 1.50696 * 109.47144 * 179.97438 * 9 8 5 11 11 O 1.21275 * 119.99893 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00045 * 179.97438 * 10 9 8 13 13 C 1.39270 * 120.00181 * 185.60667 * 12 10 9 14 14 C 1.39676 * 119.57493 * 18.86973 * 13 12 10 15 15 C 1.38647 * 119.49846 * 180.02562 * 14 13 12 16 16 C 1.38352 * 118.66715 * 359.74169 * 15 14 13 17 17 C 1.40576 * 119.12889 * 0.50565 * 16 15 14 18 18 C 1.41336 * 119.78389 * 179.76817 * 17 16 15 19 19 H 1.07999 * 120.00309 * 7.00374 * 18 17 16 20 20 C 1.40029 * 119.99969 * 187.00093 * 18 17 16 21 21 N 1.30742 * 120.00396 * 181.89274 * 20 18 17 22 22 Si 1.86805 * 119.99629 * 1.89704 * 20 18 17 23 23 H 1.48504 * 109.46955 * 179.97438 * 22 20 18 24 24 H 1.48504 * 109.47068 * 299.99751 * 22 20 18 25 25 H 1.48498 * 109.47442 * 59.99743 * 22 20 18 26 26 N 1.31901 * 119.57925 * 198.89825 * 13 12 10 27 27 H 1.08996 * 109.46913 * 299.99912 * 1 2 3 28 28 H 1.09005 * 109.47037 * 59.99595 * 1 2 3 29 29 H 1.09001 * 109.47412 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47409 * 240.00447 * 2 1 3 31 31 H 1.08992 * 109.47440 * 299.99880 * 3 2 1 32 32 H 1.09008 * 109.47014 * 60.00580 * 3 2 1 33 33 H 1.09003 * 109.47092 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47151 * 55.00350 * 4 2 1 35 35 H 1.09004 * 109.47187 * 294.99638 * 4 2 1 36 36 H 1.08993 * 109.46941 * 60.00368 * 8 5 4 37 37 H 1.08995 * 109.47217 * 300.00005 * 8 5 4 38 38 H 1.08999 * 109.46787 * 60.00059 * 9 8 5 39 39 H 1.08995 * 109.47310 * 300.00118 * 9 8 5 40 40 H 0.96998 * 120.00529 * 5.61400 * 12 10 9 41 41 H 1.08005 * 120.24629 * 0.02562 * 14 13 12 42 42 H 1.08003 * 120.66881 * 180.02562 * 15 14 13 43 43 H 1.08006 * 120.43386 * 180.24780 * 16 15 14 44 44 H 0.97002 * 119.99843 * 354.83631 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 16 3.8479 -0.8515 1.1766 6 8 4.3992 0.4563 1.2468 7 8 4.1976 -1.6943 0.0873 8 6 4.2234 -1.7202 2.7241 9 6 5.7353 -1.9250 2.8400 10 6 6.0474 -2.6461 4.1259 11 8 5.1491 -2.9652 4.8756 12 7 7.3247 -2.9372 4.4424 13 6 7.6051 -3.7046 5.5702 14 6 6.5990 -4.4902 6.1372 15 6 6.8798 -5.2531 7.2603 16 6 8.1595 -5.2159 7.7850 17 6 9.1271 -4.4011 7.1717 18 6 10.4373 -4.3489 7.6990 19 1 10.7249 -5.0162 8.4981 20 6 11.3627 -3.4321 7.1854 21 7 12.5855 -3.4089 7.6476 22 14 10.8501 -2.2421 5.8398 23 1 12.0043 -1.3827 5.4729 24 1 10.4023 -3.0060 4.6476 25 1 9.7360 -1.3912 6.3295 26 7 8.8173 -3.6798 6.0897 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 3.1300 1.4425 0.0005 34 1 1.6054 -1.7198 1.2950 35 1 1.7516 -0.1584 2.1370 36 1 3.7247 -2.6893 2.7270 37 1 3.8709 -1.1276 3.5682 38 1 6.2344 -0.9560 2.8369 39 1 6.0874 -2.5178 1.9959 40 1 8.0487 -2.6122 3.8847 41 1 5.6097 -4.5032 5.7039 42 1 6.1162 -5.8676 7.7139 43 1 8.4106 -5.8020 8.6567 44 1 12.8317 -3.9739 8.3967 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882476767.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:53 Heat of formation + Delta-G solvation = -91.377069 kcal Electronic energy + Delta-G solvation = -26811.166918 eV Core-core repulsion = 22855.328934 eV Total energy + Delta-G solvation = -3955.837984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.31550 -38.30020 -37.34983 -36.92353 -36.21841 -34.74002 -33.68536 -33.35615 -31.18698 -29.66404 -28.51847 -27.64095 -25.87931 -25.14465 -22.16183 -21.79541 -20.90617 -19.95733 -19.21895 -18.47842 -17.80664 -17.13261 -16.86436 -16.59162 -15.98813 -15.83635 -15.20080 -15.11910 -14.72673 -14.41105 -14.10938 -14.03612 -13.70770 -13.58814 -13.06481 -13.01700 -12.88533 -12.72695 -12.63426 -12.52699 -12.29312 -12.27184 -11.95557 -11.88884 -11.77849 -11.51019 -11.36866 -11.29368 -11.17331 -10.85659 -10.55330 -10.41898 -10.09079 -9.71052 -9.38745 -9.20619 -8.62748 -7.86796 -7.47899 -7.29762 -4.83627 -0.41632 2.07528 2.36907 2.57600 2.91394 3.00453 3.33106 3.51616 3.60882 3.64407 3.93990 3.99681 4.08175 4.18315 4.33870 4.46175 4.46800 4.58751 4.66463 4.77618 4.99416 5.04422 5.08202 5.17779 5.19181 5.36570 5.43183 5.44586 5.46941 5.59680 5.72951 5.77955 5.89811 5.99619 6.37164 6.44614 6.46776 7.04165 7.10387 7.38340 7.48066 7.51623 7.68838 8.04069 8.17992 8.33475 8.58888 9.33001 9.95317 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022845 B = 0.002388 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.359189 B =11721.453764 C =12631.801578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.084 4.084 3 C -0.184 4.184 4 C -0.608 4.608 5 S 2.415 3.585 6 O -0.931 6.931 7 O -0.936 6.936 8 C -0.597 4.597 9 C -0.133 4.133 10 C 0.523 3.477 11 O -0.511 6.511 12 N -0.654 5.654 13 C 0.386 3.614 14 C -0.312 4.312 15 C -0.035 4.035 16 C -0.275 4.275 17 C 0.273 3.727 18 C -0.474 4.474 19 H 0.084 0.916 20 C 0.042 3.958 21 N -0.804 5.804 22 Si 1.157 2.843 23 H -0.331 1.331 24 H -0.284 1.284 25 H -0.294 1.294 26 N -0.598 5.598 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.410 0.590 41 H 0.139 0.861 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.409 6.600 -14.308 25.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 C -0.241 4.241 4 C -0.737 4.737 5 S 2.598 3.402 6 O -0.928 6.928 7 O -0.933 6.933 8 C -0.725 4.725 9 C -0.174 4.174 10 C 0.309 3.691 11 O -0.386 6.386 12 N -0.299 5.299 13 C 0.155 3.845 14 C -0.337 4.337 15 C -0.059 4.059 16 C -0.298 4.298 17 C 0.149 3.851 18 C -0.506 4.506 19 H 0.102 0.898 20 C -0.179 4.179 21 N -0.425 5.425 22 Si 0.993 3.007 23 H -0.265 1.265 24 H -0.212 1.212 25 H -0.222 1.222 26 N -0.324 5.324 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.246 0.754 41 H 0.156 0.844 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.205 8.259 -15.697 26.143 hybrid contribution -1.325 -2.125 2.190 3.326 sum -20.530 6.134 -13.507 25.329 Atomic orbital electron populations 1.21813 0.93441 1.02272 1.02438 1.20851 0.98079 0.96542 0.94828 1.22370 1.03683 0.94916 1.03126 1.30396 1.25260 1.10370 1.07670 1.08182 0.78472 0.76125 0.77386 1.93583 1.76025 1.36772 1.86434 1.93603 1.81597 1.68741 1.49328 1.30144 1.03848 1.16009 1.22529 1.21353 0.93696 1.04004 0.98383 1.20160 0.82248 0.79416 0.87320 1.90627 1.45825 1.51533 1.50597 1.43287 1.08491 1.51602 1.26514 1.18090 0.90729 0.89145 0.86526 1.21491 1.00967 1.07464 1.03791 1.20927 0.95500 0.95294 0.94177 1.21618 0.94349 1.08869 1.04918 1.18270 0.93558 0.87194 0.86107 1.20740 0.94805 1.17607 1.17434 0.89799 1.27798 0.91497 0.97825 1.00809 1.70643 1.18079 1.34071 1.19746 0.81796 0.71095 0.72929 0.74924 1.26476 1.21226 1.22201 1.65933 1.18551 1.31009 1.16867 0.92169 0.91917 0.92249 0.89588 0.91485 0.91611 0.89904 0.84729 0.84647 0.84057 0.83976 0.86744 0.86724 0.75393 0.84399 0.87554 0.87597 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 9.19 37.16 0.34 -0.34 16 2 C -0.08 -0.51 2.92 -90.62 -0.26 -0.77 16 3 C -0.18 -1.24 8.83 37.16 0.33 -0.92 16 4 C -0.61 -3.05 5.26 37.16 0.20 -2.86 16 5 S 2.42 18.61 4.51 -107.50 -0.49 18.13 16 6 O -0.93 -9.72 15.46 -57.83 -0.89 -10.61 16 7 O -0.94 -10.22 18.10 -57.83 -1.05 -11.27 16 8 C -0.60 -4.70 5.09 37.16 0.19 -4.51 16 9 C -0.13 -1.36 5.71 -27.88 -0.16 -1.52 16 10 C 0.52 8.03 7.67 -10.99 -0.08 7.95 16 11 O -0.51 -9.14 12.78 5.56 0.07 -9.07 16 12 N -0.65 -11.67 5.41 -11.40 -0.06 -11.73 16 13 C 0.39 8.68 7.51 -154.98 -1.16 7.51 16 14 C -0.31 -6.86 8.83 -38.89 -0.34 -7.20 16 15 C -0.03 -0.75 10.15 -39.39 -0.40 -1.15 16 16 C -0.28 -6.48 9.83 -38.66 -0.38 -6.86 16 17 C 0.27 7.10 6.39 -85.00 -0.54 6.56 16 18 C -0.47 -12.81 9.58 -37.73 -0.36 -13.17 16 19 H 0.08 2.26 8.05 -52.49 -0.42 1.83 16 20 C 0.04 1.13 5.52 -17.34 -0.10 1.04 16 21 N -0.80 -21.72 13.65 55.55 0.76 -20.96 16 22 Si 1.16 27.78 25.53 -169.99 -4.34 23.44 16 23 H -0.33 -7.88 7.11 56.52 0.40 -7.47 16 24 H -0.28 -6.51 6.70 56.52 0.38 -6.13 16 25 H -0.29 -7.14 7.10 56.52 0.40 -6.74 16 26 N -0.60 -14.98 4.58 -10.26 -0.05 -15.02 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 33 H 0.08 0.69 5.40 -51.93 -0.28 0.41 16 34 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.14 0.44 8.14 -51.92 -0.42 0.01 16 36 H 0.14 0.95 8.10 -51.93 -0.42 0.53 16 37 H 0.14 0.98 8.10 -51.93 -0.42 0.55 16 38 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.41 6.33 8.83 -40.82 -0.36 5.97 16 41 H 0.14 2.90 5.33 -52.50 -0.28 2.62 16 42 H 0.11 1.93 8.06 -52.48 -0.42 1.51 16 43 H 0.11 2.32 8.06 -52.48 -0.42 1.90 16 44 H 0.28 7.32 8.72 -40.82 -0.36 6.97 16 LS Contribution 373.49 15.07 5.63 5.63 Total: -1.00 -35.57 373.49 -9.59 -45.16 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.43 Total: 2.55 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -2.74 Total: -16.24 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.65 Total: -47.71 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -1.87 Total: -30.95 kcal Atomic # 14 Polarization: 27.78 SS G_CDS: -4.34 Total: 23.44 kcal Atomic # 16 Polarization: 18.61 SS G_CDS: -0.49 Total: 18.13 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.57 -9.59 -45.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882476767.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.216 kcal (2) G-P(sol) polarization free energy of solvation -35.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds