Wall clock time and date at job start Sat Apr 11 2020 05:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47128 * 2 1 4 4 C 1.53001 * 109.46917 * 120.00329 * 2 1 3 5 5 S 1.81405 * 109.46933 * 174.99985 * 4 2 1 6 6 O 1.42099 * 108.58013 * 65.51193 * 5 4 2 7 7 O 1.42100 * 108.57623 * 294.48591 * 5 4 2 8 8 C 1.81401 * 101.91978 * 179.97438 * 5 4 2 9 9 C 1.53004 * 109.46938 * 179.97438 * 8 5 4 10 10 C 1.50696 * 109.47144 * 179.97438 * 9 8 5 11 11 O 1.21275 * 119.99893 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00045 * 179.97438 * 10 9 8 13 13 C 1.39270 * 120.00181 * 185.60667 * 12 10 9 14 14 C 1.39676 * 119.57493 * 18.86973 * 13 12 10 15 15 C 1.38647 * 119.49846 * 180.02562 * 14 13 12 16 16 C 1.38352 * 118.66715 * 359.74169 * 15 14 13 17 17 C 1.40576 * 119.12889 * 0.50565 * 16 15 14 18 18 C 1.41336 * 119.78389 * 179.76817 * 17 16 15 19 19 H 1.07999 * 120.00309 * 7.00374 * 18 17 16 20 20 C 1.40029 * 119.99969 * 187.00093 * 18 17 16 21 21 N 1.30742 * 120.00396 * 181.89274 * 20 18 17 22 22 Si 1.86805 * 119.99629 * 1.89704 * 20 18 17 23 23 H 1.48504 * 109.46955 * 179.97438 * 22 20 18 24 24 H 1.48504 * 109.47068 * 299.99751 * 22 20 18 25 25 H 1.48498 * 109.47442 * 59.99743 * 22 20 18 26 26 N 1.31901 * 119.57925 * 198.89825 * 13 12 10 27 27 H 1.08996 * 109.46913 * 299.99912 * 1 2 3 28 28 H 1.09005 * 109.47037 * 59.99595 * 1 2 3 29 29 H 1.09001 * 109.47412 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47409 * 240.00447 * 2 1 3 31 31 H 1.08992 * 109.47440 * 299.99880 * 3 2 1 32 32 H 1.09008 * 109.47014 * 60.00580 * 3 2 1 33 33 H 1.09003 * 109.47092 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47151 * 55.00350 * 4 2 1 35 35 H 1.09004 * 109.47187 * 294.99638 * 4 2 1 36 36 H 1.08993 * 109.46941 * 60.00368 * 8 5 4 37 37 H 1.08995 * 109.47217 * 300.00005 * 8 5 4 38 38 H 1.08999 * 109.46787 * 60.00059 * 9 8 5 39 39 H 1.08995 * 109.47310 * 300.00118 * 9 8 5 40 40 H 0.96998 * 120.00529 * 5.61400 * 12 10 9 41 41 H 1.08005 * 120.24629 * 0.02562 * 14 13 12 42 42 H 1.08003 * 120.66881 * 180.02562 * 15 14 13 43 43 H 1.08006 * 120.43386 * 180.24780 * 16 15 14 44 44 H 0.97002 * 119.99843 * 354.83631 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 16 3.8479 -0.8515 1.1766 6 8 4.3992 0.4563 1.2468 7 8 4.1976 -1.6943 0.0873 8 6 4.2234 -1.7202 2.7241 9 6 5.7353 -1.9250 2.8400 10 6 6.0474 -2.6461 4.1259 11 8 5.1491 -2.9652 4.8756 12 7 7.3247 -2.9372 4.4424 13 6 7.6051 -3.7046 5.5702 14 6 6.5990 -4.4902 6.1372 15 6 6.8798 -5.2531 7.2603 16 6 8.1595 -5.2159 7.7850 17 6 9.1271 -4.4011 7.1717 18 6 10.4373 -4.3489 7.6990 19 1 10.7249 -5.0162 8.4981 20 6 11.3627 -3.4321 7.1854 21 7 12.5855 -3.4089 7.6476 22 14 10.8501 -2.2421 5.8398 23 1 12.0043 -1.3827 5.4729 24 1 10.4023 -3.0060 4.6476 25 1 9.7360 -1.3912 6.3295 26 7 8.8173 -3.6798 6.0897 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 3.1300 1.4425 0.0005 34 1 1.6054 -1.7198 1.2950 35 1 1.7516 -0.1584 2.1370 36 1 3.7247 -2.6893 2.7270 37 1 3.8709 -1.1276 3.5682 38 1 6.2344 -0.9560 2.8369 39 1 6.0874 -2.5178 1.9959 40 1 8.0487 -2.6122 3.8847 41 1 5.6097 -4.5032 5.7039 42 1 6.1162 -5.8676 7.7139 43 1 8.4106 -5.8020 8.6567 44 1 12.8317 -3.9739 8.3967 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882476767.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:52 Heat of formation + Delta-G solvation = -115.949492 kcal Electronic energy + Delta-G solvation = -26812.232458 eV Core-core repulsion = 22855.328934 eV Total energy + Delta-G solvation = -3956.903524 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.75492 -39.96808 -38.02330 -37.43279 -36.83797 -36.34907 -35.40043 -34.31848 -33.02007 -31.37492 -28.97970 -28.06138 -27.45741 -26.41647 -23.76725 -23.40865 -21.57705 -21.24195 -20.33347 -19.82213 -19.01612 -18.42229 -17.64963 -17.36931 -17.01948 -16.90885 -16.66543 -16.29638 -15.75125 -15.57444 -15.53343 -15.11983 -14.81599 -14.63931 -14.33515 -14.25245 -14.17923 -13.72849 -13.64031 -13.40883 -13.14069 -13.00128 -12.98396 -12.97006 -12.73718 -12.48142 -12.39572 -12.26877 -11.95445 -11.90607 -11.79340 -11.72094 -11.63930 -11.15766 -11.09235 -10.79155 -10.43592 -9.77802 -9.29157 -9.24711 -6.84502 -0.99816 0.46240 0.70955 1.49374 1.54577 1.68549 1.81403 1.83092 2.05608 2.42312 2.65093 2.65360 3.10949 3.29270 3.52120 3.55989 3.66510 3.75815 3.88096 4.05588 4.06339 4.30734 4.37764 4.41798 4.51115 4.58752 4.63097 4.67282 4.69896 4.75257 4.82276 4.86702 4.95267 5.02711 5.22101 5.32643 5.35891 5.37460 5.40298 5.41131 5.69158 5.78007 5.91048 6.24523 6.38647 6.61947 6.96310 7.46806 7.93338 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022845 B = 0.002388 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.359189 B =11721.453764 C =12631.801578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 C -0.190 4.190 4 C -0.593 4.593 5 S 2.425 3.575 6 O -0.963 6.963 7 O -0.973 6.973 8 C -0.597 4.597 9 C -0.137 4.137 10 C 0.525 3.475 11 O -0.534 6.534 12 N -0.657 5.657 13 C 0.374 3.626 14 C -0.307 4.307 15 C -0.027 4.027 16 C -0.293 4.293 17 C 0.257 3.743 18 C -0.507 4.507 19 H 0.068 0.932 20 C 0.013 3.987 21 N -0.829 5.829 22 Si 1.188 2.812 23 H -0.330 1.330 24 H -0.270 1.270 25 H -0.300 1.300 26 N -0.613 5.613 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.421 0.579 41 H 0.154 0.846 42 H 0.146 0.854 43 H 0.115 0.885 44 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.835 6.852 -15.613 29.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 C -0.248 4.248 4 C -0.725 4.725 5 S 2.612 3.388 6 O -0.961 6.961 7 O -0.970 6.970 8 C -0.726 4.726 9 C -0.177 4.177 10 C 0.313 3.687 11 O -0.411 6.411 12 N -0.303 5.303 13 C 0.143 3.857 14 C -0.331 4.331 15 C -0.051 4.051 16 C -0.315 4.315 17 C 0.132 3.868 18 C -0.540 4.540 19 H 0.087 0.913 20 C -0.204 4.204 21 N -0.452 5.452 22 Si 1.020 2.980 23 H -0.263 1.263 24 H -0.197 1.197 25 H -0.229 1.229 26 N -0.339 5.339 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.180 0.820 35 H 0.178 0.822 36 H 0.174 0.826 37 H 0.173 0.827 38 H 0.151 0.849 39 H 0.154 0.846 40 H 0.258 0.742 41 H 0.171 0.829 42 H 0.163 0.837 43 H 0.133 0.867 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.612 8.511 -17.037 29.563 hybrid contribution -0.567 -2.226 2.549 3.432 sum -23.179 6.285 -14.488 28.047 Atomic orbital electron populations 1.21829 0.92174 1.02991 1.02989 1.20947 0.99109 0.95988 0.95156 1.22429 1.02544 0.95901 1.03892 1.30290 1.21418 1.12439 1.08369 1.07719 0.79730 0.74808 0.76522 1.93545 1.77793 1.38029 1.86689 1.93555 1.83148 1.69367 1.50912 1.30183 1.02321 1.17146 1.22924 1.21524 0.95790 1.04575 0.95828 1.21047 0.80819 0.78490 0.88362 1.90590 1.46179 1.52515 1.51780 1.43460 1.10095 1.51394 1.25363 1.18510 0.90062 0.89532 0.87633 1.21902 1.01426 1.06282 1.03481 1.21359 0.95413 0.94756 0.93582 1.21782 0.94965 1.09128 1.05591 1.18452 0.93726 0.87931 0.86684 1.20719 0.96090 1.18719 1.18448 0.91339 1.28574 0.91447 0.98548 1.01809 1.70666 1.18543 1.35234 1.20727 0.81407 0.70536 0.71838 0.74179 1.26342 1.19744 1.22876 1.65911 1.20010 1.31116 1.16832 0.91498 0.91629 0.91437 0.90063 0.90859 0.90881 0.91733 0.82025 0.82205 0.82607 0.82745 0.84866 0.84645 0.74169 0.82878 0.83673 0.86736 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.19 71.98 0.66 -0.28 16 2 C -0.09 -0.89 2.92 -10.79 -0.03 -0.92 16 3 C -0.19 -2.28 8.83 71.98 0.64 -1.64 16 4 C -0.59 -3.91 5.26 71.98 0.38 -3.53 16 5 S 2.43 31.98 4.51 -56.49 -0.25 31.72 16 6 O -0.96 -18.80 15.46 -127.37 -1.97 -20.76 16 7 O -0.97 -19.75 18.10 -127.37 -2.31 -22.06 16 8 C -0.60 -7.44 5.09 71.98 0.37 -7.07 16 9 C -0.14 -2.38 5.71 29.85 0.17 -2.21 16 10 C 0.52 14.62 7.67 87.66 0.67 15.29 16 11 O -0.53 -17.47 12.78 -3.01 -0.04 -17.51 16 12 N -0.66 -21.96 5.41 -308.37 -1.67 -23.62 16 13 C 0.37 16.14 7.51 133.25 1.00 17.15 16 14 C -0.31 -12.65 8.83 22.72 0.20 -12.45 16 15 C -0.03 -1.09 10.15 22.39 0.23 -0.86 16 16 C -0.29 -13.55 9.83 22.87 0.22 -13.33 16 17 C 0.26 13.45 6.39 40.19 0.26 13.71 16 18 C -0.51 -28.27 9.58 23.47 0.22 -28.05 16 19 H 0.07 3.88 8.05 -2.91 -0.02 3.85 16 20 C 0.01 0.70 5.52 85.29 0.47 1.17 16 21 N -0.83 -46.19 13.65 21.84 0.30 -45.89 16 22 Si 1.19 56.65 25.53 68.60 1.75 58.40 16 23 H -0.33 -15.44 7.11 99.48 0.71 -14.74 16 24 H -0.27 -12.06 6.70 99.48 0.67 -11.39 16 25 H -0.30 -14.44 7.10 99.48 0.71 -13.74 16 26 N -0.61 -30.24 4.58 -186.36 -0.85 -31.09 16 27 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 29 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.73 8.14 -2.38 -0.02 0.72 16 33 H 0.06 1.03 5.40 -2.39 -0.01 1.02 16 34 H 0.16 0.25 8.14 -2.39 -0.02 0.24 16 35 H 0.16 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.16 1.50 8.10 -2.39 -0.02 1.48 16 37 H 0.15 1.56 8.10 -2.39 -0.02 1.54 16 38 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.42 12.10 8.83 -92.71 -0.82 11.28 16 41 H 0.15 5.91 5.33 -3.15 -0.02 5.89 16 42 H 0.15 4.68 8.06 -2.91 -0.02 4.66 16 43 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 44 H 0.28 15.16 8.72 -92.71 -0.81 14.35 16 Total: -1.00 -77.68 373.49 0.54 -77.15 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.12 Total: 16.70 kcal Atomic # 6 Polarization: -28.49 SS G_CDS: 5.46 Total: -23.03 kcal Atomic # 7 Polarization: -98.38 SS G_CDS: -2.22 Total: -100.61 kcal Atomic # 8 Polarization: -56.02 SS G_CDS: -4.31 Total: -60.33 kcal Atomic # 14 Polarization: 56.65 SS G_CDS: 1.75 Total: 58.40 kcal Atomic # 16 Polarization: 31.98 SS G_CDS: -0.25 Total: 31.72 kcal Total: -77.68 0.54 -77.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882476767.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.804 kcal (2) G-P(sol) polarization free energy of solvation -77.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds