Wall clock time and date at job start Sat Apr 11 2020 05:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47384 * 2 1 4 4 C 1.52999 * 109.46776 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.46871 * 180.02562 * 4 3 2 6 6 N 1.29025 * 124.91881 * 89.97284 * 5 4 3 7 7 C 1.31783 * 117.12171 * 180.02562 * 6 5 4 8 8 C 1.50707 * 122.74328 * 180.02562 * 7 6 5 9 9 C 1.33630 * 114.50354 * 359.97438 * 7 6 5 10 10 C 1.50697 * 126.03963 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47266 * 89.99962 * 10 9 7 12 12 O 1.20822 * 119.99958 * 0.02562 * 11 10 9 13 13 O 1.34234 * 120.00068 * 180.02562 * 11 10 9 14 14 C 1.45196 * 116.99938 * 179.97438 * 13 11 10 15 15 C 1.50704 * 109.47016 * 179.97438 * 14 13 11 16 16 O 1.21296 * 119.99980 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99643 * 180.02562 * 15 14 13 18 18 C 1.37102 * 119.99435 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00513 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99989 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00329 * 179.97438 * 20 18 17 22 22 Si 1.86811 * 119.99623 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46608 * 90.00320 * 22 20 18 24 24 H 1.48496 * 109.46721 * 209.99686 * 22 20 18 25 25 H 1.48495 * 109.47324 * 330.00392 * 22 20 18 26 26 S 1.70976 * 124.91401 * 270.28897 * 5 4 3 27 27 H 1.08997 * 109.47309 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46813 * 300.00488 * 1 2 3 29 29 H 1.09000 * 109.46955 * 60.00026 * 1 2 3 30 30 H 1.08999 * 109.47300 * 239.99885 * 2 1 3 31 31 H 1.09005 * 109.47328 * 120.00193 * 2 1 3 32 32 H 1.08995 * 109.46980 * 60.00193 * 3 2 1 33 33 H 1.09000 * 109.47053 * 299.99913 * 3 2 1 34 34 H 1.08995 * 109.47383 * 60.00226 * 4 3 2 35 35 H 1.09000 * 109.47085 * 299.99680 * 4 3 2 36 36 H 1.09006 * 109.46446 * 269.98874 * 8 7 6 37 37 H 1.08994 * 109.47504 * 29.99423 * 8 7 6 38 38 H 1.09003 * 109.46619 * 150.00077 * 8 7 6 39 39 H 1.09004 * 109.47205 * 330.00055 * 10 9 7 40 40 H 1.08997 * 109.47395 * 210.00548 * 10 9 7 41 41 H 1.08996 * 109.47465 * 299.99911 * 14 13 11 42 42 H 1.08999 * 109.47008 * 59.99921 * 14 13 11 43 43 H 0.96994 * 120.00272 * 359.97438 * 17 15 14 44 44 H 0.96999 * 119.99442 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4423 -0.0006 5 6 4.0725 2.8632 0.0000 6 7 4.3187 3.5590 1.0583 7 6 4.7535 4.7902 0.8800 8 6 5.0805 5.7131 2.0257 9 6 4.8817 5.1529 -0.3997 10 6 5.3558 6.4938 -0.8980 11 6 6.8534 6.4671 -1.0642 12 8 7.4721 5.4622 -0.8051 13 8 7.4999 7.5597 -1.5001 14 6 8.9422 7.4620 -1.6358 15 6 9.4900 8.7747 -2.1336 16 8 8.7386 9.7014 -2.3528 17 7 10.8146 8.9187 -2.3360 18 6 11.3130 10.1132 -2.7883 19 1 10.6442 10.9385 -2.9828 20 6 12.6788 10.2619 -2.9966 21 7 13.1565 11.4066 -3.4306 22 14 13.8358 8.8345 -2.6595 23 1 13.9885 8.0197 -3.8916 24 1 15.1619 9.3594 -2.2458 25 1 13.2768 7.9900 -1.5736 26 16 4.3915 3.7890 -1.4016 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9284 0.8891 36 1 4.1903 6.2780 2.3026 37 1 5.4188 5.1264 2.8797 38 1 5.8688 6.4025 1.7232 39 1 5.0838 7.2658 -0.1782 40 1 4.8875 6.7110 -1.8580 41 1 9.3833 7.2278 -0.6670 42 1 9.1876 6.6732 -2.3470 43 1 11.4154 8.1776 -2.1610 44 1 14.1100 11.5104 -3.5756 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884804199.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:57 Heat of formation + Delta-G solvation = -118.899679 kcal Electronic energy + Delta-G solvation = -25731.816401 eV Core-core repulsion = 21774.784947 eV Total energy + Delta-G solvation = -3957.031454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.83054 -40.94463 -40.15882 -37.65280 -36.92188 -36.09156 -34.53784 -33.87444 -32.14920 -30.71424 -30.10917 -27.32896 -26.41967 -25.89628 -23.12017 -22.47244 -21.95540 -21.55136 -20.54526 -19.89457 -19.03845 -18.96630 -17.87825 -17.77346 -17.29766 -16.66856 -16.33624 -16.17131 -15.91896 -15.83560 -15.33816 -14.77280 -14.66037 -14.63702 -14.52366 -14.27915 -14.22385 -13.78459 -13.65696 -13.58263 -13.53921 -13.08198 -13.02752 -13.00352 -12.47080 -12.19655 -12.15530 -12.11721 -12.01847 -11.89406 -11.86976 -11.75434 -11.59906 -11.45467 -10.65030 -10.61999 -10.35033 -10.29098 -9.61093 -8.46928 -6.10042 -0.42009 0.30452 0.69838 1.04396 1.28063 1.32384 1.33104 1.43887 1.74434 1.78733 2.19062 2.81749 3.01721 3.07494 3.46362 3.72425 3.80713 3.91829 3.96131 4.02860 4.03627 4.09855 4.11825 4.32925 4.40623 4.43437 4.44044 4.66034 4.69850 4.73881 4.77198 4.86547 4.98102 5.01673 5.10571 5.23646 5.27845 5.30538 5.38602 5.46810 5.48424 5.84557 6.44595 6.59307 6.71645 6.76452 7.24665 7.76205 8.69576 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.028324 B = 0.001800 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.332925 B =15551.200476 C =15785.246278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.107 4.107 4 C -0.044 4.044 5 C 0.053 3.947 6 N -0.496 5.496 7 C 0.074 3.926 8 C -0.082 4.082 9 C -0.239 4.239 10 C -0.028 4.028 11 C 0.462 3.538 12 O -0.524 6.524 13 O -0.341 6.341 14 C 0.068 3.932 15 C 0.449 3.551 16 O -0.607 6.607 17 N -0.576 5.576 18 C -0.334 4.334 19 H 0.062 0.938 20 C -0.005 4.005 21 N -0.924 5.924 22 Si 0.960 3.040 23 H -0.255 1.255 24 H -0.272 1.272 25 H -0.233 1.233 26 S 0.148 5.852 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.152 0.848 40 H 0.141 0.859 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.392 0.608 44 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.547 -25.197 8.215 34.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.146 4.146 4 C -0.085 4.085 5 C -0.224 4.224 6 N -0.212 5.212 7 C -0.058 4.058 8 C -0.141 4.141 9 C -0.360 4.360 10 C -0.067 4.067 11 C 0.305 3.695 12 O -0.413 6.413 13 O -0.257 6.257 14 C -0.009 4.009 15 C 0.236 3.764 16 O -0.491 6.491 17 N -0.218 5.218 18 C -0.463 4.463 19 H 0.080 0.920 20 C -0.206 4.206 21 N -0.564 5.564 22 Si 0.779 3.221 23 H -0.180 1.180 24 H -0.196 1.196 25 H -0.156 1.156 26 S 0.406 5.594 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.169 0.831 40 H 0.159 0.841 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.229 0.771 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.826 -25.183 7.485 34.156 hybrid contribution 1.446 0.438 0.677 1.656 sum -20.380 -24.745 8.163 33.080 Atomic orbital electron populations 1.21779 0.95516 1.02086 1.01806 1.21507 0.96175 0.95276 1.02895 1.21571 0.92241 0.98372 1.02431 1.20484 0.96827 0.85887 1.05310 1.27486 1.01576 1.02505 0.90873 1.66194 1.16389 1.06033 1.32549 1.20486 0.99063 0.91623 0.94651 1.20466 1.02819 0.96710 0.94109 1.25053 1.13762 1.00976 0.96208 1.19718 0.85706 0.94028 1.07278 1.24178 0.92344 0.80204 0.72727 1.90667 1.69552 1.33763 1.47300 1.86557 1.21933 1.39889 1.77282 1.22582 0.78145 0.95659 1.04508 1.20164 0.82616 0.89992 0.83673 1.90582 1.58292 1.43805 1.56468 1.41818 1.06253 1.13521 1.60183 1.19019 0.93080 0.90788 1.43422 0.91989 1.26059 0.98206 1.00584 0.95716 1.69778 1.15366 1.26491 1.44744 0.85440 0.78149 0.78053 0.80425 1.17960 1.19641 1.15607 1.83795 1.59328 1.04740 1.11576 0.92022 0.93064 0.92638 0.90864 0.91471 0.92397 0.91490 0.87861 0.88570 0.88483 0.90631 0.90792 0.83081 0.84109 0.86768 0.86766 0.77149 0.90810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 71.98 0.71 -0.50 16 2 C -0.12 -0.96 5.93 30.59 0.18 -0.77 16 3 C -0.11 -1.14 5.20 30.59 0.16 -0.98 16 4 C -0.04 -0.56 5.80 29.85 0.17 -0.38 16 5 C 0.05 1.01 6.64 88.52 0.59 1.60 16 6 N -0.50 -11.56 10.53 -179.39 -1.89 -13.45 16 7 C 0.07 1.66 6.74 41.52 0.28 1.94 16 8 C -0.08 -1.46 9.82 71.24 0.70 -0.76 16 9 C -0.24 -5.04 5.08 24.64 0.13 -4.92 16 10 C -0.03 -0.53 5.74 29.10 0.17 -0.37 16 11 C 0.46 12.54 7.95 71.24 0.57 13.10 16 12 O -0.52 -16.33 15.78 21.98 0.35 -15.98 16 13 O -0.34 -11.21 9.76 -45.11 -0.44 -11.65 16 14 C 0.07 2.26 5.94 71.24 0.42 2.69 16 15 C 0.45 20.47 7.86 87.66 0.69 21.15 16 16 O -0.61 -33.93 16.08 15.72 0.25 -33.67 16 17 N -0.58 -26.87 5.09 -306.97 -1.56 -28.43 16 18 C -0.33 -19.22 10.16 84.04 0.85 -18.36 16 19 H 0.06 4.23 7.39 -2.91 -0.02 4.20 16 20 C -0.01 -0.30 5.50 84.93 0.47 0.17 16 21 N -0.92 -54.30 13.96 21.66 0.30 -54.00 16 22 Si 0.96 37.77 27.74 68.60 1.90 39.67 16 23 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 24 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 25 H -0.23 -7.77 6.52 99.48 0.65 -7.12 16 26 S 0.15 2.74 23.18 -56.49 -1.31 1.43 16 27 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.10 0.93 8.14 -2.39 -0.02 0.92 16 35 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.07 1.30 7.35 -2.39 -0.02 1.28 16 39 H 0.15 2.18 7.43 -2.38 -0.02 2.16 16 40 H 0.14 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.11 3.23 8.13 -2.39 -0.02 3.21 16 42 H 0.11 3.22 8.13 -2.39 -0.02 3.21 16 43 H 0.39 15.07 5.76 -92.71 -0.53 14.54 16 44 H 0.28 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -79.05 391.33 4.12 -74.93 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: 0.43 Total: 27.55 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 6.09 Total: 13.60 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -3.15 Total: -95.88 kcal Atomic # 8 Polarization: -61.46 SS G_CDS: 0.16 Total: -61.30 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 1.90 Total: 39.67 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -1.31 Total: 1.43 kcal Total: -79.05 4.12 -74.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884804199.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.965 kcal (2) G-P(sol) polarization free energy of solvation -79.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds