Wall clock time and date at job start Sat Apr 11 2020 05:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47094 * 2 1 4 4 H 1.09001 * 109.47233 * 177.99480 * 3 2 1 5 5 N 1.46497 * 109.47169 * 57.99616 * 3 2 1 6 6 S 1.65605 * 120.00109 * 96.46155 * 5 3 2 7 7 O 1.42097 * 106.40253 * 311.65958 * 6 5 3 8 8 O 1.42103 * 106.40055 * 178.73661 * 6 5 3 9 9 C 1.76203 * 107.21322 * 65.20078 * 6 5 3 10 10 C 1.38232 * 120.00332 * 89.99960 * 9 6 5 11 11 C 1.38232 * 119.99906 * 179.72213 * 10 9 6 12 12 C 1.38237 * 120.00182 * 0.27984 * 11 10 9 13 13 C 1.50707 * 119.99999 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.47195 * 89.99749 * 13 12 11 15 15 H 1.08003 * 120.00183 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00184 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99922 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00271 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47264 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46971 * 119.99989 * 18 16 14 21 21 H 1.48500 * 109.47033 * 239.99978 * 18 16 14 22 22 C 1.38237 * 119.99873 * 359.95042 * 12 11 10 23 23 C 1.38233 * 119.99815 * 0.02562 * 22 12 11 24 24 C 1.50696 * 109.47079 * 297.99355 * 3 2 1 25 25 O 1.21284 * 119.99937 * 120.00283 * 24 3 2 26 26 N 1.34776 * 120.00384 * 300.00099 * 24 3 2 27 27 C 1.46495 * 119.99910 * 180.02562 * 26 24 3 28 28 H 1.08996 * 109.47030 * 175.78171 * 1 2 3 29 29 H 1.08997 * 109.46600 * 295.77878 * 1 2 3 30 30 H 1.08995 * 109.46962 * 55.77846 * 1 2 3 31 31 H 1.08999 * 109.47138 * 240.00490 * 2 1 3 32 32 H 1.09005 * 109.47400 * 119.99992 * 2 1 3 33 33 H 0.96998 * 119.99828 * 276.46745 * 5 3 2 34 34 H 1.07994 * 119.99777 * 359.97438 * 10 9 6 35 35 H 1.07999 * 120.00164 * 180.25714 * 11 10 9 36 36 H 1.08997 * 109.46608 * 210.00089 * 13 12 11 37 37 H 1.08996 * 109.46843 * 329.99617 * 13 12 11 38 38 H 0.96997 * 120.00445 * 180.02562 * 17 16 14 39 39 H 1.08000 * 119.99623 * 180.02562 * 22 12 11 40 40 H 1.08008 * 119.99513 * 180.02562 * 23 22 12 41 41 H 0.96997 * 119.99504 * 359.97438 * 26 24 3 42 42 H 1.09001 * 109.47021 * 299.99555 * 27 26 24 43 43 H 1.08993 * 109.47943 * 59.99781 * 27 26 24 44 44 H 1.09007 * 109.47219 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0360 5 7 1.5127 2.1469 1.1713 6 16 2.4315 2.2762 2.5429 7 8 2.9262 0.9730 2.8189 8 8 1.6627 3.0285 3.4715 9 6 3.8330 3.2655 2.1404 10 6 3.7776 4.6380 2.2950 11 6 4.8791 5.4135 1.9847 12 6 6.0339 4.8170 1.5141 13 6 7.2345 5.6625 1.1752 14 6 8.1072 5.8078 2.3952 15 1 7.8209 5.3355 3.3233 16 6 9.2711 6.5436 2.3266 17 7 9.6195 7.1193 1.1966 18 14 10.3525 6.7243 3.8390 19 1 9.7425 5.9870 4.9746 20 1 11.6992 6.1672 3.5540 21 1 10.4757 8.1618 4.1906 22 6 6.0877 3.4449 1.3550 23 6 4.9864 2.6694 1.6658 24 6 1.5787 2.1384 -1.2545 25 8 0.8784 3.1256 -1.1778 26 7 1.9444 1.6638 -2.4618 27 6 1.4964 2.3407 -3.6813 28 1 -0.3633 -1.0248 -0.0756 29 1 -0.3632 0.4469 0.9254 30 1 -0.3633 0.5779 -0.8497 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.6252 2.5375 1.1434 34 1 2.8753 5.1040 2.6622 35 1 4.8372 6.4854 2.1094 36 1 7.8022 5.1840 0.3772 37 1 6.9039 6.6475 0.8457 38 1 10.4386 7.6367 1.1481 39 1 6.9901 2.9789 0.9877 40 1 5.0286 1.5973 1.5418 41 1 2.5048 0.8745 -2.5231 42 1 0.4069 2.3408 -3.7174 43 1 1.8600 3.3682 -3.6812 44 1 1.8890 1.8168 -4.5529 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885227349.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:11 Heat of formation + Delta-G solvation = -99.799670 kcal Electronic energy + Delta-G solvation = -27686.874751 eV Core-core repulsion = 23730.671536 eV Total energy + Delta-G solvation = -3956.203215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.32631 -38.82184 -37.22928 -36.28048 -35.78610 -34.98863 -33.69608 -31.96213 -31.56644 -30.60099 -28.41119 -27.44634 -25.89241 -23.74392 -22.79993 -22.37974 -20.92768 -20.53313 -19.49138 -18.41441 -17.69844 -17.24049 -16.46457 -16.42934 -15.87052 -15.62269 -15.16432 -14.98429 -14.58854 -14.39852 -14.38038 -14.14694 -13.79918 -13.77406 -13.12710 -12.95192 -12.86853 -12.62663 -12.27428 -12.13860 -12.09045 -11.97325 -11.89387 -11.85341 -11.71531 -11.50431 -11.39784 -10.98072 -10.94139 -10.59234 -10.50545 -10.26795 -9.80271 -9.71298 -9.59097 -9.47485 -8.60830 -8.55319 -8.40172 -6.18316 -4.23323 0.44963 1.30378 1.77625 2.29778 2.70608 3.09696 3.22503 3.30600 3.35938 3.73577 4.08193 4.25143 4.36569 4.39300 4.43163 4.59259 4.79501 4.93178 5.01240 5.14340 5.18831 5.19319 5.22982 5.35756 5.44531 5.49962 5.62424 5.70587 5.79574 5.80651 5.89326 5.94719 6.01532 6.22999 6.30998 6.48394 6.76700 6.82019 6.89272 7.09623 7.27818 7.41585 7.57405 7.76992 7.85576 8.11952 8.81773 9.41809 10.91761 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015242 B = 0.003020 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.616138 B = 9269.440645 C =10323.607918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.138 4.138 3 C 0.139 3.861 4 H 0.113 0.887 5 N -1.099 6.099 6 S 2.698 3.302 7 O -0.960 6.960 8 O -0.960 6.960 9 C -0.706 4.706 10 C -0.018 4.018 11 C -0.144 4.144 12 C 0.027 3.973 13 C 0.039 3.961 14 C -0.517 4.517 15 H 0.060 0.940 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.899 3.101 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.145 4.145 23 C -0.030 4.030 24 C 0.513 3.487 25 O -0.525 6.525 26 N -0.733 5.733 27 C 0.087 3.913 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.424 0.576 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.264 0.736 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.404 0.596 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.696 -14.891 -8.732 24.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.178 4.178 3 C 0.027 3.973 4 H 0.130 0.870 5 N -0.858 5.858 6 S 2.791 3.209 7 O -0.950 6.950 8 O -0.951 6.951 9 C -0.796 4.796 10 C -0.037 4.037 11 C -0.163 4.163 12 C 0.027 3.973 13 C 0.002 3.998 14 C -0.555 4.555 15 H 0.078 0.922 16 C -0.142 4.142 17 N -0.530 5.530 18 Si 0.726 3.274 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.164 4.164 23 C -0.050 4.050 24 C 0.297 3.703 25 O -0.400 6.400 26 N -0.386 5.386 27 C -0.057 4.057 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.261 0.739 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.238 0.762 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.117 -14.501 -7.946 23.800 hybrid contribution 1.176 0.536 0.172 1.304 sum -15.941 -13.965 -7.774 22.574 Atomic orbital electron populations 1.21760 0.94911 1.02040 1.02408 1.22062 0.97535 0.93755 1.04437 1.20665 0.99844 0.92303 0.84511 0.86966 1.55482 1.30590 1.70457 1.29281 1.01634 0.73250 0.73891 0.72143 1.93562 1.80980 1.37796 1.82678 1.93580 1.70004 1.72767 1.58720 1.30325 1.18074 1.08290 1.22875 1.20786 0.98682 0.91434 0.92801 1.21264 0.93005 1.00532 1.01538 1.21130 0.95271 0.94475 0.86445 1.18545 0.89069 0.94325 0.97835 1.21009 1.05849 1.32613 0.96015 0.92206 1.25008 0.97617 0.95190 0.96355 1.69957 1.24366 1.33383 1.25273 0.86421 0.80209 0.78000 0.82781 1.19548 1.20802 1.20789 1.21232 0.98285 0.93975 1.02904 1.20778 0.91821 0.99197 0.93180 1.20663 0.80280 0.84389 0.84955 1.90720 1.37000 1.25451 1.86806 1.45744 1.54358 1.32524 1.05959 1.21563 1.00376 0.98288 0.85466 0.92080 0.92036 0.92809 0.90389 0.88751 0.73943 0.85170 0.85285 0.94718 0.94706 0.92679 0.85306 0.85258 0.76245 0.92180 0.91946 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.51 37.16 0.35 -0.76 16 2 C -0.14 -0.97 5.81 -26.73 -0.16 -1.12 16 3 C 0.14 1.27 2.89 -69.09 -0.20 1.07 16 4 H 0.11 0.90 7.24 -51.93 -0.38 0.53 16 5 N -1.10 -12.03 4.52 -5.88 -0.03 -12.05 16 6 S 2.70 37.28 5.64 -107.50 -0.61 36.67 16 7 O -0.96 -14.32 16.73 -57.17 -0.96 -15.28 16 8 O -0.96 -15.85 17.28 -57.17 -0.99 -16.84 16 9 C -0.71 -11.17 5.84 -39.58 -0.23 -11.40 16 10 C -0.02 -0.30 9.52 -39.59 -0.38 -0.67 16 11 C -0.14 -2.75 9.70 -39.58 -0.38 -3.14 16 12 C 0.03 0.56 5.07 -104.62 -0.53 0.03 16 13 C 0.04 0.96 5.10 -29.03 -0.15 0.81 16 14 C -0.52 -14.01 9.09 -34.44 -0.31 -14.32 16 15 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -25.49 13.29 55.43 0.74 -24.76 16 18 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C -0.15 -2.63 9.70 -39.58 -0.38 -3.02 16 23 C -0.03 -0.47 8.91 -39.58 -0.35 -0.83 16 24 C 0.51 5.21 5.98 -10.99 -0.07 5.14 16 25 O -0.52 -7.30 16.01 5.55 0.09 -7.21 16 26 N -0.73 -5.09 5.59 -67.08 -0.38 -5.47 16 27 C 0.09 0.55 10.70 59.84 0.64 1.19 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.48 7.57 -51.93 -0.39 0.09 16 30 H 0.05 0.41 7.14 -51.93 -0.37 0.04 16 31 H 0.08 0.33 7.51 -51.93 -0.39 -0.06 16 32 H 0.09 0.73 7.83 -51.93 -0.41 0.33 16 33 H 0.42 4.41 8.08 -34.47 -0.28 4.13 16 34 H 0.13 1.96 7.62 -52.49 -0.40 1.56 16 35 H 0.13 2.35 8.06 -52.49 -0.42 1.92 16 36 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 37 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 40 H 0.13 1.63 7.62 -52.48 -0.40 1.23 16 41 H 0.40 1.56 8.22 -40.82 -0.34 1.22 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.26 8.14 -51.92 -0.42 -0.16 16 LS Contribution 382.96 15.07 5.77 5.77 Total: -1.00 -35.34 382.96 -9.89 -45.23 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.27 Total: 3.30 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: -2.24 Total: -25.45 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 0.33 Total: -42.28 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -1.86 Total: -39.33 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 37.28 SS G_CDS: -0.61 Total: 36.67 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.34 -9.89 -45.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885227349.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.569 kcal (2) G-P(sol) polarization free energy of solvation -35.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds