Wall clock time and date at job start Sat Apr 11 2020 05:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47000 * 2 1 4 4 H 1.09003 * 109.47093 * 53.64043 * 3 2 1 5 5 C 1.53000 * 109.47540 * 293.63903 * 3 2 1 6 6 C 1.52998 * 109.47322 * 173.63958 * 3 2 1 7 7 H 1.09000 * 109.46709 * 301.29672 * 6 3 2 8 8 N 1.46904 * 109.47062 * 181.29936 * 6 3 2 9 9 C 1.46903 * 110.99631 * 155.00006 * 8 6 3 10 10 C 1.50701 * 109.46692 * 179.97438 * 9 8 6 11 11 C 1.38109 * 120.02916 * 260.01778 * 10 9 8 12 12 C 1.38388 * 120.05220 * 179.97438 * 11 10 9 13 13 Cl 1.73605 * 119.94051 * 179.97438 * 12 11 10 14 14 C 1.38428 * 120.11899 * 0.02562 * 12 11 10 15 15 C 1.38073 * 120.05167 * 359.67257 * 14 12 11 16 16 C 1.38858 * 120.02642 * 80.00424 * 10 9 8 17 17 O 1.35761 * 120.05512 * 0.02562 * 16 10 9 18 18 C 1.34828 * 116.99855 * 174.77189 * 17 16 10 19 19 H 1.07994 * 120.00091 * 5.08514 * 18 17 16 20 20 C 1.38649 * 120.00062 * 185.08024 * 18 17 16 21 21 N 1.31565 * 120.00388 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99887 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.46883 * 90.00437 * 22 20 18 24 24 H 1.48504 * 109.47484 * 210.00016 * 22 20 18 25 25 H 1.48499 * 109.47388 * 330.00641 * 22 20 18 26 26 C 1.50700 * 109.47110 * 61.29559 * 6 3 2 27 27 N 1.34774 * 119.99804 * 280.73994 * 26 6 3 28 28 O 1.21276 * 119.99930 * 100.74440 * 26 6 3 29 29 H 1.09007 * 109.47298 * 59.99756 * 1 2 3 30 30 H 1.09002 * 109.47160 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47473 * 299.99788 * 1 2 3 32 32 H 1.09001 * 109.47027 * 240.00506 * 2 1 3 33 33 H 1.08993 * 109.47424 * 120.00275 * 2 1 3 34 34 H 1.08998 * 109.47417 * 179.97438 * 5 3 2 35 35 H 1.09003 * 109.47042 * 300.00171 * 5 3 2 36 36 H 1.09002 * 109.46998 * 59.99652 * 5 3 2 37 37 H 1.00894 * 111.00251 * 31.04664 * 8 6 3 38 38 H 1.09006 * 109.47386 * 59.99728 * 9 8 6 39 39 H 1.08993 * 109.47167 * 299.99318 * 9 8 6 40 40 H 1.07996 * 119.97081 * 359.97438 * 11 10 9 41 41 H 1.07998 * 119.97909 * 179.97438 * 14 12 11 42 42 H 1.08003 * 120.03085 * 180.30313 * 15 14 12 43 43 H 0.97001 * 119.99794 * 180.02562 * 21 20 18 44 44 H 0.96997 * 120.00372 * 5.47374 * 27 26 6 45 45 H 0.97002 * 120.00163 * 185.46702 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5866 1.9881 0.8276 5 6 1.6647 2.1162 -1.3214 6 6 3.5616 1.4456 0.1598 7 1 3.8301 0.9452 1.0902 8 7 4.0479 2.8314 0.1910 9 6 5.3273 2.9243 0.9070 10 6 5.7939 4.3572 0.9178 11 6 6.7548 4.7780 0.0195 12 6 7.1833 6.0938 0.0286 13 17 8.3919 6.6194 -1.1014 14 6 6.6506 6.9915 0.9379 15 6 5.6852 6.5773 1.8339 16 6 5.2577 5.2557 1.8307 17 8 4.3132 4.8445 2.7149 18 6 3.9138 5.7370 3.6432 19 1 4.2811 6.7520 3.6096 20 6 3.0313 5.3518 4.6408 21 7 2.6412 6.2229 5.5463 22 14 2.3952 3.5964 4.6984 23 1 3.3060 2.7669 5.5277 24 1 1.0343 3.5822 5.2925 25 1 2.3398 3.0445 3.3209 26 6 4.1900 0.7186 -1.0011 27 7 4.2142 -0.6288 -1.0189 28 8 4.6740 1.3461 -1.9191 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0276 3.1440 -1.3212 35 1 2.1180 1.5706 -2.1490 36 1 0.5806 2.1141 -1.4353 37 1 3.3600 3.4469 0.5984 38 1 6.0703 2.3043 0.4052 39 1 5.1962 2.5768 1.9317 40 1 7.1722 4.0795 -0.6906 41 1 6.9869 8.0177 0.9433 42 1 5.2663 7.2791 2.5399 43 1 2.0241 5.9532 6.2445 44 1 3.7583 -1.1313 -0.3258 45 1 4.6875 -1.0961 -1.7250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887059496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:14 Heat of formation + Delta-G solvation = -59.447921 kcal Electronic energy + Delta-G solvation = -28172.696955 eV Core-core repulsion = 24216.199817 eV Total energy + Delta-G solvation = -3956.497138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.11220 -39.43632 -37.01460 -36.75413 -35.72081 -34.70207 -33.41965 -32.52845 -31.33219 -29.53059 -28.92333 -26.88479 -25.45463 -24.60718 -23.65697 -21.76877 -21.20549 -20.61360 -19.68614 -18.05235 -17.39687 -17.13631 -16.65695 -16.09277 -15.38327 -15.28937 -15.10297 -14.68144 -14.39263 -14.06983 -13.95923 -13.89126 -13.70529 -13.40321 -12.99626 -12.77065 -12.58954 -12.47209 -12.40718 -12.29471 -12.00398 -11.84087 -11.58784 -11.34007 -11.16265 -10.98738 -10.95990 -10.75133 -10.63755 -10.50596 -10.38012 -10.27483 -9.72834 -9.59618 -9.52247 -8.99178 -8.42248 -8.10245 -7.40895 -6.56072 -4.22717 1.86244 1.98721 2.76879 2.77697 3.06750 3.11029 3.19023 3.47902 4.06320 4.11707 4.44863 4.63569 4.68273 4.72679 4.91608 4.99960 5.02899 5.12623 5.30521 5.33039 5.45154 5.49954 5.54699 5.57650 5.69198 5.76571 5.81561 5.88459 5.91274 5.93960 6.07399 6.11264 6.22998 6.32524 6.46452 6.56927 6.76664 6.81768 6.86384 7.02693 7.09576 7.35295 7.40253 7.59086 7.65159 7.87283 8.39794 8.78074 9.36226 10.51339 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.007363 B = 0.005266 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3801.750106 B = 5315.414107 C = 8506.370480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C -0.091 4.091 4 H 0.085 0.915 5 C -0.143 4.143 6 C 0.073 3.927 7 H 0.063 0.937 8 N -0.657 5.657 9 C 0.120 3.880 10 C -0.145 4.145 11 C -0.042 4.042 12 C -0.115 4.115 13 Cl -0.103 7.103 14 C -0.061 4.061 15 C -0.211 4.211 16 C 0.169 3.831 17 O -0.210 6.210 18 C -0.390 4.390 19 H 0.108 0.892 20 C 0.066 3.934 21 N -0.873 5.873 22 Si 0.904 3.096 23 H -0.274 1.274 24 H -0.281 1.281 25 H -0.260 1.260 26 C 0.524 3.476 27 N -0.867 5.867 28 O -0.514 6.514 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.357 0.643 38 H 0.070 0.930 39 H 0.041 0.959 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.142 0.858 43 H 0.281 0.719 44 H 0.397 0.603 45 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.226 -12.502 -9.005 15.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C -0.110 4.110 4 H 0.103 0.897 5 C -0.200 4.200 6 C -0.041 4.041 7 H 0.080 0.920 8 N -0.290 5.290 9 C -0.008 4.008 10 C -0.147 4.147 11 C -0.062 4.062 12 C -0.142 4.142 13 Cl -0.074 7.074 14 C -0.080 4.080 15 C -0.230 4.230 16 C 0.116 3.884 17 O -0.115 6.115 18 C -0.465 4.465 19 H 0.125 0.875 20 C -0.138 4.138 21 N -0.510 5.510 22 Si 0.730 3.270 23 H -0.200 1.200 24 H -0.207 1.207 25 H -0.185 1.185 26 C 0.308 3.692 27 N -0.433 5.433 28 O -0.386 6.386 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.179 0.821 38 H 0.089 0.911 39 H 0.059 0.941 40 H 0.143 0.857 41 H 0.139 0.861 42 H 0.159 0.841 43 H 0.091 0.909 44 H 0.226 0.774 45 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 0.161 -12.046 -9.977 15.643 hybrid contribution -0.474 -0.996 1.198 1.628 sum -0.313 -13.042 -8.780 15.725 Atomic orbital electron populations 1.21786 0.95265 1.01530 1.02343 1.21764 0.96831 0.96053 1.02025 1.21316 0.92078 0.97122 1.00508 0.89696 1.21810 1.00475 1.02090 0.95611 1.21515 0.95033 0.91943 0.95639 0.91977 1.60212 1.05856 1.04508 1.58465 1.20577 0.91191 0.93117 0.95965 1.18627 1.01677 0.94883 0.99532 1.20418 0.95546 0.93598 0.96616 1.20380 0.99904 0.95107 0.98784 1.98288 1.56366 1.90959 1.61811 1.20703 0.95371 0.98447 0.93509 1.21197 1.01936 0.96579 1.03322 1.18952 0.87978 0.91903 0.89588 1.83528 1.47880 1.41507 1.38556 1.20761 1.27548 0.93355 1.04839 0.87464 1.24454 0.95897 0.99413 0.94033 1.69639 1.32354 1.34793 1.14241 0.86219 0.78200 0.83319 0.79294 1.19977 1.20704 1.18457 1.20632 0.78559 0.81935 0.88082 1.44129 1.58833 1.07525 1.32832 1.90729 1.44716 1.66588 1.36611 0.92265 0.92795 0.92509 0.91269 0.91860 0.91051 0.92702 0.92794 0.82143 0.91127 0.94113 0.85686 0.86150 0.84051 0.90896 0.77388 0.77313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.69 37.16 0.36 -0.93 16 2 C -0.13 -1.14 4.11 -26.73 -0.11 -1.25 16 3 C -0.09 -1.08 2.06 -90.62 -0.19 -1.27 16 4 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 5 C -0.14 -1.79 8.56 37.16 0.32 -1.47 16 6 C 0.07 0.97 2.26 -68.86 -0.16 0.82 16 7 H 0.06 0.78 7.80 -51.93 -0.40 0.37 16 8 N -0.66 -10.80 5.18 -109.22 -0.57 -11.37 16 9 C 0.12 2.05 5.27 -4.97 -0.03 2.02 16 10 C -0.15 -2.75 5.41 -104.44 -0.56 -3.32 16 11 C -0.04 -0.76 9.45 -39.57 -0.37 -1.13 16 12 C -0.11 -2.03 6.32 -39.46 -0.25 -2.28 16 13 Cl -0.10 -1.61 28.95 -51.86 -1.50 -3.11 16 14 C -0.06 -1.11 9.82 -39.57 -0.39 -1.49 16 15 C -0.21 -4.29 9.17 -39.40 -0.36 -4.65 16 16 C 0.17 3.59 6.62 -39.11 -0.26 3.33 16 17 O -0.21 -4.92 7.78 0.02 0.00 -4.92 16 18 C -0.39 -10.06 9.95 30.88 0.31 -9.76 16 19 H 0.11 2.87 5.43 -52.49 -0.29 2.58 16 20 C 0.07 1.72 5.49 -17.51 -0.10 1.62 16 21 N -0.87 -23.80 13.96 55.48 0.77 -23.02 16 22 Si 0.90 19.77 28.62 -169.99 -4.86 14.91 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 26 C 0.52 6.96 5.43 -10.99 -0.06 6.90 16 27 N -0.87 -7.52 7.83 31.22 0.24 -7.28 16 28 O -0.51 -9.02 17.13 5.56 0.10 -8.92 16 29 H 0.06 0.51 6.61 -51.93 -0.34 0.16 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.57 6.35 -51.93 -0.33 0.24 16 33 H 0.06 0.49 8.07 -51.93 -0.42 0.07 16 34 H 0.07 1.03 7.57 -51.93 -0.39 0.63 16 35 H 0.05 0.73 6.99 -51.93 -0.36 0.36 16 36 H 0.05 0.59 6.61 -51.93 -0.34 0.24 16 37 H 0.36 6.31 8.19 -39.30 -0.32 5.99 16 38 H 0.07 1.15 7.86 -51.93 -0.41 0.74 16 39 H 0.04 0.72 7.77 -51.93 -0.40 0.32 16 40 H 0.13 2.10 8.04 -52.49 -0.42 1.68 16 41 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 42 H 0.14 2.98 5.64 -52.48 -0.30 2.68 16 43 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.40 2.44 7.32 -40.82 -0.30 2.15 16 45 H 0.40 2.96 8.93 -40.82 -0.36 2.60 16 LS Contribution 380.30 15.07 5.73 5.73 Total: -1.00 -29.15 380.30 -8.15 -37.30 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -6.22 Total: 13.55 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -1.85 Total: -12.86 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.45 Total: -41.67 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.10 Total: -13.84 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.86 Total: 14.91 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -1.50 Total: -3.11 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.15 -8.15 -37.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887059496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.152 kcal (2) G-P(sol) polarization free energy of solvation -29.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds