Wall clock time and date at job start Sat Apr 11 2020 05:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47000 * 2 1 4 4 H 1.09003 * 109.47093 * 53.64043 * 3 2 1 5 5 C 1.53000 * 109.47540 * 293.63903 * 3 2 1 6 6 C 1.52998 * 109.47322 * 173.63958 * 3 2 1 7 7 H 1.09000 * 109.46709 * 301.29672 * 6 3 2 8 8 N 1.46904 * 109.47062 * 181.29936 * 6 3 2 9 9 C 1.46903 * 110.99631 * 155.00006 * 8 6 3 10 10 C 1.50701 * 109.46692 * 179.97438 * 9 8 6 11 11 C 1.38109 * 120.02916 * 260.01778 * 10 9 8 12 12 C 1.38388 * 120.05220 * 179.97438 * 11 10 9 13 13 Cl 1.73605 * 119.94051 * 179.97438 * 12 11 10 14 14 C 1.38428 * 120.11899 * 0.02562 * 12 11 10 15 15 C 1.38073 * 120.05167 * 359.67257 * 14 12 11 16 16 C 1.38858 * 120.02642 * 80.00424 * 10 9 8 17 17 O 1.35761 * 120.05512 * 0.02562 * 16 10 9 18 18 C 1.34828 * 116.99855 * 174.77189 * 17 16 10 19 19 H 1.07994 * 120.00091 * 5.08514 * 18 17 16 20 20 C 1.38649 * 120.00062 * 185.08024 * 18 17 16 21 21 N 1.31565 * 120.00388 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99887 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.46883 * 90.00437 * 22 20 18 24 24 H 1.48504 * 109.47484 * 210.00016 * 22 20 18 25 25 H 1.48499 * 109.47388 * 330.00641 * 22 20 18 26 26 C 1.50700 * 109.47110 * 61.29559 * 6 3 2 27 27 N 1.34774 * 119.99804 * 280.73994 * 26 6 3 28 28 O 1.21276 * 119.99930 * 100.74440 * 26 6 3 29 29 H 1.09007 * 109.47298 * 59.99756 * 1 2 3 30 30 H 1.09002 * 109.47160 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47473 * 299.99788 * 1 2 3 32 32 H 1.09001 * 109.47027 * 240.00506 * 2 1 3 33 33 H 1.08993 * 109.47424 * 120.00275 * 2 1 3 34 34 H 1.08998 * 109.47417 * 179.97438 * 5 3 2 35 35 H 1.09003 * 109.47042 * 300.00171 * 5 3 2 36 36 H 1.09002 * 109.46998 * 59.99652 * 5 3 2 37 37 H 1.00894 * 111.00251 * 31.04664 * 8 6 3 38 38 H 1.09006 * 109.47386 * 59.99728 * 9 8 6 39 39 H 1.08993 * 109.47167 * 299.99318 * 9 8 6 40 40 H 1.07996 * 119.97081 * 359.97438 * 11 10 9 41 41 H 1.07998 * 119.97909 * 179.97438 * 14 12 11 42 42 H 1.08003 * 120.03085 * 180.30313 * 15 14 12 43 43 H 0.97001 * 119.99794 * 180.02562 * 21 20 18 44 44 H 0.96997 * 120.00372 * 5.47374 * 27 26 6 45 45 H 0.97002 * 120.00163 * 185.46702 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5866 1.9881 0.8276 5 6 1.6647 2.1162 -1.3214 6 6 3.5616 1.4456 0.1598 7 1 3.8301 0.9452 1.0902 8 7 4.0479 2.8314 0.1910 9 6 5.3273 2.9243 0.9070 10 6 5.7939 4.3572 0.9178 11 6 6.7548 4.7780 0.0195 12 6 7.1833 6.0938 0.0286 13 17 8.3919 6.6194 -1.1014 14 6 6.6506 6.9915 0.9379 15 6 5.6852 6.5773 1.8339 16 6 5.2577 5.2557 1.8307 17 8 4.3132 4.8445 2.7149 18 6 3.9138 5.7370 3.6432 19 1 4.2811 6.7520 3.6096 20 6 3.0313 5.3518 4.6408 21 7 2.6412 6.2229 5.5463 22 14 2.3952 3.5964 4.6984 23 1 3.3060 2.7669 5.5277 24 1 1.0343 3.5822 5.2925 25 1 2.3398 3.0445 3.3209 26 6 4.1900 0.7186 -1.0011 27 7 4.2142 -0.6288 -1.0189 28 8 4.6740 1.3461 -1.9191 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0276 3.1440 -1.3212 35 1 2.1180 1.5706 -2.1490 36 1 0.5806 2.1141 -1.4353 37 1 3.3600 3.4469 0.5984 38 1 6.0703 2.3043 0.4052 39 1 5.1962 2.5768 1.9317 40 1 7.1722 4.0795 -0.6906 41 1 6.9869 8.0177 0.9433 42 1 5.2663 7.2791 2.5399 43 1 2.0241 5.9532 6.2445 44 1 3.7583 -1.1313 -0.3258 45 1 4.6875 -1.0961 -1.7250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887059496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:14 Heat of formation + Delta-G solvation = -78.764431 kcal Electronic energy + Delta-G solvation = -28173.534582 eV Core-core repulsion = 24216.199817 eV Total energy + Delta-G solvation = -3957.334765 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.33757 -40.86341 -38.61362 -37.80714 -37.11427 -35.88245 -34.44604 -34.33949 -32.60744 -30.82056 -30.23843 -28.03152 -27.27785 -25.82776 -24.61663 -23.38663 -22.44875 -21.78989 -20.64349 -19.87045 -19.02579 -18.08653 -17.69519 -17.34929 -16.91408 -16.58631 -16.15936 -16.00892 -15.93197 -15.47038 -15.38012 -15.12094 -14.88236 -14.47786 -14.43625 -14.18841 -14.03345 -13.93882 -13.89262 -13.41482 -12.96680 -12.90715 -12.83856 -12.77052 -12.55053 -12.44328 -12.06253 -11.94200 -11.89807 -11.79838 -11.61276 -11.47686 -11.26362 -10.87516 -10.82139 -10.48043 -9.90787 -9.37682 -9.01817 -8.49189 -6.21691 0.33366 0.41772 1.30893 1.32492 1.36165 1.50261 1.75196 2.26696 2.49900 2.66295 2.93740 3.03199 3.33348 3.70257 3.81795 3.88954 3.92744 4.05771 4.15931 4.21589 4.30081 4.33323 4.48414 4.54555 4.58422 4.59577 4.71895 4.79251 4.80492 5.02239 5.04218 5.10122 5.17738 5.21987 5.23244 5.33466 5.42267 5.46102 5.50760 5.68898 5.71769 5.88158 6.03549 6.06452 6.26269 6.58368 6.84409 7.49099 7.51448 8.61706 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.007363 B = 0.005266 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3801.750106 B = 5315.414107 C = 8506.370480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.089 4.089 4 H 0.073 0.927 5 C -0.136 4.136 6 C 0.068 3.932 7 H 0.077 0.923 8 N -0.667 5.667 9 C 0.125 3.875 10 C -0.138 4.138 11 C -0.045 4.045 12 C -0.104 4.104 13 Cl -0.076 7.076 14 C -0.061 4.061 15 C -0.222 4.222 16 C 0.145 3.855 17 O -0.222 6.222 18 C -0.396 4.396 19 H 0.082 0.918 20 C 0.014 3.986 21 N -0.920 5.920 22 Si 0.965 3.035 23 H -0.271 1.271 24 H -0.274 1.274 25 H -0.246 1.246 26 C 0.528 3.472 27 N -0.842 5.842 28 O -0.562 6.562 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.046 0.954 36 H 0.068 0.932 37 H 0.347 0.653 38 H 0.082 0.918 39 H 0.035 0.965 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.126 0.874 43 H 0.284 0.716 44 H 0.413 0.587 45 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.251 -15.209 -10.419 18.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.108 4.108 4 H 0.092 0.908 5 C -0.194 4.194 6 C -0.046 4.046 7 H 0.095 0.905 8 N -0.299 5.299 9 C -0.004 4.004 10 C -0.140 4.140 11 C -0.064 4.064 12 C -0.131 4.131 13 Cl -0.047 7.047 14 C -0.079 4.079 15 C -0.242 4.242 16 C 0.094 3.906 17 O -0.128 6.128 18 C -0.472 4.472 19 H 0.100 0.900 20 C -0.185 4.185 21 N -0.560 5.560 22 Si 0.787 3.213 23 H -0.196 1.196 24 H -0.199 1.199 25 H -0.170 1.170 26 C 0.312 3.688 27 N -0.409 5.409 28 O -0.439 6.439 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.167 0.833 38 H 0.100 0.900 39 H 0.053 0.947 40 H 0.160 0.840 41 H 0.162 0.838 42 H 0.143 0.857 43 H 0.094 0.906 44 H 0.245 0.755 45 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 0.662 -14.803 -11.418 18.707 hybrid contribution -0.409 -0.084 1.418 1.478 sum 0.253 -14.887 -10.001 17.936 Atomic orbital electron populations 1.21792 0.94833 1.02504 1.01847 1.21761 0.97173 0.93920 1.03353 1.21323 0.91016 0.99076 0.99417 0.90825 1.21731 1.01252 1.00478 0.95901 1.21673 0.96047 0.90421 0.96434 0.90510 1.60192 1.05329 1.06307 1.58085 1.20545 0.91995 0.91888 0.95948 1.18911 1.01043 0.95632 0.98448 1.20658 0.95104 0.94106 0.96529 1.20555 0.99392 0.94923 0.98270 1.98305 1.55062 1.90717 1.60661 1.20893 0.94511 0.99749 0.92796 1.21224 1.02821 0.96287 1.03846 1.19321 0.88457 0.92798 0.89979 1.83494 1.49532 1.40736 1.39078 1.20666 1.27811 0.92965 1.05758 0.90018 1.25243 0.96148 1.03512 0.93593 1.69734 1.33923 1.36871 1.15463 0.85300 0.77744 0.78341 0.79940 1.19607 1.19942 1.16974 1.20563 0.77953 0.83054 0.87253 1.43868 1.57762 1.06044 1.33233 1.90713 1.47105 1.67884 1.38179 0.92636 0.91093 0.93198 0.90339 0.90040 0.93608 0.93475 0.91335 0.83303 0.89988 0.94661 0.83971 0.83834 0.85672 0.90640 0.75497 0.76129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.69 71.98 0.70 -1.48 16 2 C -0.12 -1.83 4.11 30.59 0.13 -1.71 16 3 C -0.09 -1.97 2.06 -10.79 -0.02 -1.99 16 4 H 0.07 1.82 8.10 -2.39 -0.02 1.80 16 5 C -0.14 -3.32 8.56 71.98 0.62 -2.70 16 6 C 0.07 1.70 2.26 44.17 0.10 1.80 16 7 H 0.08 1.71 7.80 -2.39 -0.02 1.70 16 8 N -0.67 -21.50 5.18 -499.45 -2.59 -24.09 16 9 C 0.12 4.14 5.27 85.56 0.45 4.59 16 10 C -0.14 -5.18 5.41 -19.75 -0.11 -5.28 16 11 C -0.04 -1.53 9.45 22.27 0.21 -1.32 16 12 C -0.10 -3.51 6.32 22.35 0.14 -3.37 16 13 Cl -0.08 -2.19 28.95 -2.72 -0.08 -2.27 16 14 C -0.06 -2.14 9.82 22.28 0.22 -1.92 16 15 C -0.22 -9.27 9.17 22.39 0.21 -9.06 16 16 C 0.15 6.28 6.62 22.58 0.15 6.43 16 17 O -0.22 -10.66 7.78 -22.85 -0.18 -10.84 16 18 C -0.40 -21.35 9.95 67.92 0.68 -20.68 16 19 H 0.08 4.69 5.43 -2.91 -0.02 4.67 16 20 C 0.01 0.76 5.49 84.83 0.47 1.22 16 21 N -0.92 -52.09 13.96 21.61 0.30 -51.79 16 22 Si 0.96 41.02 28.62 68.60 1.96 42.99 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 25 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 26 C 0.53 12.94 5.43 87.66 0.48 13.41 16 27 N -0.84 -12.01 7.83 -173.54 -1.36 -13.37 16 28 O -0.56 -19.06 17.13 -3.02 -0.05 -19.11 16 29 H 0.05 0.82 6.61 -2.38 -0.02 0.81 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.08 1.02 6.35 -2.39 -0.02 1.00 16 33 H 0.08 0.94 8.07 -2.39 -0.02 0.92 16 34 H 0.04 1.33 7.57 -2.39 -0.02 1.31 16 35 H 0.05 1.21 6.99 -2.39 -0.02 1.19 16 36 H 0.07 1.42 6.61 -2.39 -0.02 1.41 16 37 H 0.35 12.34 8.19 -89.70 -0.73 11.61 16 38 H 0.08 2.52 7.86 -2.38 -0.02 2.50 16 39 H 0.04 1.21 7.77 -2.39 -0.02 1.19 16 40 H 0.14 4.42 8.04 -2.91 -0.02 4.39 16 41 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 42 H 0.13 5.61 5.64 -2.91 -0.02 5.60 16 43 H 0.28 14.83 8.31 -92.71 -0.77 14.06 16 44 H 0.41 3.47 7.32 -92.71 -0.68 2.79 16 45 H 0.41 4.81 8.93 -92.71 -0.83 3.99 16 Total: -1.00 -65.08 380.30 1.23 -63.85 By element: Atomic # 1 Polarization: 37.86 SS G_CDS: -1.18 Total: 36.67 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: 4.40 Total: -22.05 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -3.64 Total: -89.24 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.23 Total: -29.95 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 1.96 Total: 42.99 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -0.08 Total: -2.27 kcal Total: -65.08 1.23 -63.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887059496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.917 kcal (2) G-P(sol) polarization free energy of solvation -65.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds