Wall clock time and date at job start Sat Apr 11 2020 05:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46869 * 2 1 4 4 C 1.52998 * 109.46895 * 119.99801 * 2 1 3 5 5 S 1.81405 * 109.46904 * 175.00097 * 4 2 1 6 6 O 1.42108 * 108.57726 * 65.51363 * 5 4 2 7 7 O 1.42097 * 108.58044 * 294.48758 * 5 4 2 8 8 C 1.81405 * 101.92194 * 179.97438 * 5 4 2 9 9 C 1.52995 * 109.47061 * 179.97438 * 8 5 4 10 10 C 1.50700 * 109.47322 * 180.02562 * 9 8 5 11 11 O 1.21279 * 119.99629 * 4.99584 * 10 9 8 12 12 N 1.34769 * 120.00298 * 184.99732 * 10 9 8 13 13 C 1.37208 * 120.00389 * 4.96749 * 12 10 9 14 14 H 1.08001 * 119.99905 * 50.16450 * 13 12 10 15 15 C 1.38894 * 120.00489 * 230.17352 * 13 12 10 16 16 N 1.31414 * 119.99700 * 7.35362 * 15 13 12 17 17 Si 1.86797 * 120.00334 * 187.36061 * 15 13 12 18 18 H 1.48497 * 109.47567 * 89.99294 * 17 15 13 19 19 H 1.48499 * 109.47247 * 209.99981 * 17 15 13 20 20 H 1.48501 * 109.46909 * 329.99581 * 17 15 13 21 21 C 1.39428 * 119.99914 * 184.97378 * 12 10 9 22 22 C 1.39075 * 119.69657 * 184.99852 * 21 12 10 23 23 C 1.38383 * 119.09774 * 180.02562 * 22 21 12 24 24 C 1.38829 * 118.49169 * 0.02562 * 23 22 21 25 25 C 1.38146 * 119.31415 * 0.24813 * 24 23 22 26 26 N 1.31888 * 120.84781 * 359.47880 * 25 24 23 27 27 H 1.08999 * 109.47165 * 300.00167 * 1 2 3 28 28 H 1.08996 * 109.47117 * 60.00455 * 1 2 3 29 29 H 1.09003 * 109.46649 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47165 * 239.99833 * 2 1 3 31 31 H 1.08999 * 109.47363 * 59.99954 * 3 2 1 32 32 H 1.09004 * 109.46923 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.46880 * 299.99690 * 3 2 1 34 34 H 1.08997 * 109.47670 * 55.00481 * 4 2 1 35 35 H 1.09006 * 109.47426 * 295.00006 * 4 2 1 36 36 H 1.09003 * 109.46890 * 60.00029 * 8 5 4 37 37 H 1.09003 * 109.47113 * 300.00070 * 8 5 4 38 38 H 1.09003 * 109.47160 * 60.00298 * 9 8 5 39 39 H 1.08993 * 109.47297 * 300.00281 * 9 8 5 40 40 H 0.96996 * 119.99886 * 174.99314 * 16 15 13 41 41 H 1.07997 * 120.45205 * 0.04036 * 22 21 12 42 42 H 1.07993 * 120.75081 * 180.02562 * 23 22 21 43 43 H 1.07999 * 120.34320 * 179.97438 * 24 23 22 44 44 H 1.07997 * 119.57851 * 179.74929 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 16 3.8479 -0.8514 1.1766 6 8 4.3991 0.4566 1.2468 7 8 4.1977 -1.6942 0.0874 8 6 4.2235 -1.7199 2.7243 9 6 5.7353 -1.9246 2.8402 10 6 6.0474 -2.6468 4.1256 11 8 5.1454 -3.0463 4.8310 12 7 7.3287 -2.8485 4.4912 13 6 8.3476 -2.3088 3.7474 14 1 8.3265 -1.2622 3.4817 15 6 9.4061 -3.1085 3.3359 16 7 9.3635 -4.4071 3.5325 17 14 10.8902 -2.3380 2.5033 18 1 11.8958 -1.9651 3.5303 19 1 11.4880 -3.3130 1.5561 20 1 10.4664 -1.1234 1.7615 21 6 7.6191 -3.6057 5.6254 22 6 8.9360 -3.7234 6.0567 23 6 9.2102 -4.4785 7.1835 24 6 8.1537 -5.0925 7.8424 25 6 6.8706 -4.9374 7.3547 26 7 6.6388 -4.2072 6.2811 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6054 -1.7198 1.2952 35 1 1.7516 -0.1582 2.1370 36 1 3.7247 -2.6891 2.7273 37 1 3.8710 -1.1272 3.5684 38 1 6.2345 -0.9556 2.8370 39 1 6.0875 -2.5175 1.9961 40 1 10.0678 -4.9741 3.1811 41 1 9.7338 -3.2321 5.5196 42 1 10.2230 -4.5875 7.5421 43 1 8.3337 -5.6891 8.7245 44 1 6.0460 -5.4165 7.8615 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892465838.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:21 Heat of formation + Delta-G solvation = -59.484199 kcal Electronic energy + Delta-G solvation = -27720.633798 eV Core-core repulsion = 23766.178793 eV Total energy + Delta-G solvation = -3954.455005 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.80236 -37.99933 -36.93850 -36.61207 -35.80224 -35.19760 -32.69940 -32.14093 -31.02846 -29.26284 -28.19624 -27.41183 -25.42173 -24.85498 -22.41287 -21.81337 -20.66723 -19.31577 -18.78648 -18.02856 -17.20982 -16.42029 -16.13602 -15.70508 -15.58314 -15.24142 -14.99187 -14.76193 -14.50831 -14.32918 -13.94364 -13.57699 -13.49723 -13.42684 -12.88964 -12.73492 -12.40860 -12.38547 -12.21387 -12.17235 -12.02154 -11.86651 -11.71948 -11.56144 -11.44707 -11.23648 -11.14390 -11.09649 -10.95543 -10.80854 -10.75445 -10.46512 -10.14056 -9.43441 -9.09712 -8.94216 -8.71526 -7.98412 -7.05671 -6.49105 -4.57688 0.03194 2.20613 2.42062 2.82937 3.01484 3.10457 3.13371 3.57809 3.71706 3.90733 4.04029 4.26374 4.37286 4.51248 4.66510 4.71600 4.89603 4.96548 5.11902 5.20431 5.25029 5.32198 5.39695 5.43113 5.58074 5.67163 5.69767 5.70037 5.80708 5.95314 5.98765 6.03469 6.08507 6.13397 6.24723 6.33617 6.43641 6.81906 7.07363 7.17720 7.24554 7.52197 7.90026 8.14893 8.77433 8.84411 9.26289 9.70669 10.40448 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014751 B = 0.003287 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.716932 B = 8517.334663 C =10001.879624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.084 4.084 3 C -0.183 4.183 4 C -0.612 4.612 5 S 2.412 3.588 6 O -0.935 6.935 7 O -0.938 6.938 8 C -0.588 4.588 9 C -0.112 4.112 10 C 0.500 3.500 11 O -0.523 6.523 12 N -0.384 5.384 13 C -0.369 4.369 14 H 0.101 0.899 15 C 0.053 3.947 16 N -0.843 5.843 17 Si 0.919 3.081 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.262 1.262 21 C 0.385 3.615 22 C -0.141 4.141 23 C -0.080 4.080 24 C -0.236 4.236 25 C 0.105 3.895 26 N -0.496 5.496 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.277 0.723 41 H 0.137 0.863 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.646 6.025 -2.896 11.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 C -0.240 4.240 4 C -0.741 4.741 5 S 2.595 3.405 6 O -0.932 6.932 7 O -0.935 6.935 8 C -0.718 4.718 9 C -0.153 4.153 10 C 0.288 3.712 11 O -0.399 6.399 12 N -0.096 5.096 13 C -0.496 4.496 14 H 0.119 0.881 15 C -0.157 4.157 16 N -0.475 5.475 17 Si 0.744 3.256 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.186 1.186 21 C 0.154 3.846 22 C -0.165 4.165 23 C -0.106 4.106 24 C -0.258 4.258 25 C -0.053 4.053 26 N -0.211 5.211 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.121 0.879 39 H 0.126 0.874 40 H 0.088 0.912 41 H 0.155 0.845 42 H 0.134 0.866 43 H 0.131 0.869 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.298 6.107 -3.602 12.502 hybrid contribution 1.210 -0.435 0.531 1.391 sum -9.088 5.672 -3.071 11.144 Atomic orbital electron populations 1.21809 0.93669 1.02170 1.02230 1.20839 0.97875 0.96539 0.95063 1.22364 1.03866 0.94939 1.02866 1.30437 1.26230 1.10112 1.07276 1.08248 0.78046 0.76229 0.77936 1.93552 1.75797 1.37156 1.86743 1.93585 1.81325 1.68638 1.49933 1.30097 1.05982 1.15042 1.20716 1.21119 0.90437 1.03748 1.00000 1.20463 0.83083 0.81064 0.86622 1.90648 1.45349 1.50276 1.53625 1.41108 1.05527 1.43732 1.19255 1.19495 1.01010 0.95658 1.33412 0.88129 1.25641 0.99768 0.95027 0.95306 1.69960 1.33924 1.03475 1.40131 0.86032 0.80715 0.79466 0.79374 1.19669 1.20362 1.18606 1.18798 0.88954 0.90759 0.86042 1.21524 0.97090 1.01673 0.96179 1.21159 0.98288 0.96346 0.94846 1.21644 0.94527 1.06453 1.03184 1.22256 0.95199 0.95123 0.92771 1.67572 1.34959 1.10032 1.08581 0.92263 0.92072 0.92307 0.89658 0.91707 0.89784 0.91661 0.84891 0.84867 0.84536 0.84771 0.87869 0.87358 0.91204 0.84550 0.86636 0.86878 0.84505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.19 37.16 0.34 -0.70 16 2 C -0.08 -0.78 2.92 -90.62 -0.26 -1.04 16 3 C -0.18 -1.77 8.83 37.16 0.33 -1.44 16 4 C -0.61 -5.50 5.26 37.16 0.20 -5.31 16 5 S 2.41 31.25 4.51 -107.50 -0.49 30.77 16 6 O -0.94 -14.23 15.46 -57.83 -0.89 -15.13 16 7 O -0.94 -15.31 18.10 -57.83 -1.05 -16.35 16 8 C -0.59 -8.48 5.11 37.15 0.19 -8.29 16 9 C -0.11 -2.12 4.62 -27.89 -0.13 -2.25 16 10 C 0.50 11.90 7.58 -10.99 -0.08 11.82 16 11 O -0.52 -13.26 14.28 5.56 0.08 -13.18 16 12 N -0.38 -9.73 2.68 -60.71 -0.16 -9.90 16 13 C -0.37 -8.90 7.67 -14.90 -0.11 -9.02 16 14 H 0.10 2.26 7.36 -52.49 -0.39 1.88 16 15 C 0.05 1.25 3.59 -17.49 -0.06 1.19 16 16 N -0.84 -21.48 11.12 55.49 0.62 -20.86 16 17 Si 0.92 18.29 29.56 -169.99 -5.03 13.27 16 18 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 19 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 21 C 0.38 9.85 6.63 -154.64 -1.02 8.83 16 22 C -0.14 -3.30 7.61 -39.22 -0.30 -3.60 16 23 C -0.08 -1.61 10.17 -39.31 -0.40 -2.01 16 24 C -0.24 -4.47 10.11 -39.40 -0.40 -4.87 16 25 C 0.11 2.21 11.18 -17.56 -0.20 2.01 16 26 N -0.50 -12.46 7.92 -12.34 -0.10 -12.56 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.97 5.40 -51.93 -0.28 0.69 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.13 0.93 8.14 -51.92 -0.42 0.51 16 36 H 0.14 1.85 8.04 -51.92 -0.42 1.43 16 37 H 0.13 1.71 8.14 -51.92 -0.42 1.29 16 38 H 0.10 1.81 7.54 -51.93 -0.39 1.42 16 39 H 0.11 2.06 8.14 -51.93 -0.42 1.64 16 40 H 0.28 6.68 8.32 -40.82 -0.34 6.34 16 41 H 0.14 3.26 5.55 -52.49 -0.29 2.97 16 42 H 0.12 1.95 8.06 -52.49 -0.42 1.52 16 43 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 44 H 0.14 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 373.22 15.07 5.62 5.62 Total: -1.00 -34.04 373.22 -9.70 -43.75 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -6.40 Total: 9.26 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -1.92 Total: -14.69 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.36 Total: -43.31 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -1.86 Total: -44.66 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.27 kcal Atomic # 16 Polarization: 31.25 SS G_CDS: -0.49 Total: 30.77 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.04 -9.70 -43.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892465838.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.737 kcal (2) G-P(sol) polarization free energy of solvation -34.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds