Wall clock time and date at job start Sat Apr 11 2020 05:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46869 * 2 1 4 4 C 1.52998 * 109.46895 * 119.99801 * 2 1 3 5 5 S 1.81405 * 109.46904 * 175.00097 * 4 2 1 6 6 O 1.42108 * 108.57726 * 65.51363 * 5 4 2 7 7 O 1.42097 * 108.58044 * 294.48758 * 5 4 2 8 8 C 1.81405 * 101.92194 * 179.97438 * 5 4 2 9 9 C 1.52995 * 109.47061 * 179.97438 * 8 5 4 10 10 C 1.50700 * 109.47322 * 180.02562 * 9 8 5 11 11 O 1.21279 * 119.99629 * 4.99584 * 10 9 8 12 12 N 1.34769 * 120.00298 * 184.99732 * 10 9 8 13 13 C 1.37208 * 120.00389 * 4.96749 * 12 10 9 14 14 H 1.08001 * 119.99905 * 50.16450 * 13 12 10 15 15 C 1.38894 * 120.00489 * 230.17352 * 13 12 10 16 16 N 1.31414 * 119.99700 * 7.35362 * 15 13 12 17 17 Si 1.86797 * 120.00334 * 187.36061 * 15 13 12 18 18 H 1.48497 * 109.47567 * 89.99294 * 17 15 13 19 19 H 1.48499 * 109.47247 * 209.99981 * 17 15 13 20 20 H 1.48501 * 109.46909 * 329.99581 * 17 15 13 21 21 C 1.39428 * 119.99914 * 184.97378 * 12 10 9 22 22 C 1.39075 * 119.69657 * 184.99852 * 21 12 10 23 23 C 1.38383 * 119.09774 * 180.02562 * 22 21 12 24 24 C 1.38829 * 118.49169 * 0.02562 * 23 22 21 25 25 C 1.38146 * 119.31415 * 0.24813 * 24 23 22 26 26 N 1.31888 * 120.84781 * 359.47880 * 25 24 23 27 27 H 1.08999 * 109.47165 * 300.00167 * 1 2 3 28 28 H 1.08996 * 109.47117 * 60.00455 * 1 2 3 29 29 H 1.09003 * 109.46649 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47165 * 239.99833 * 2 1 3 31 31 H 1.08999 * 109.47363 * 59.99954 * 3 2 1 32 32 H 1.09004 * 109.46923 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.46880 * 299.99690 * 3 2 1 34 34 H 1.08997 * 109.47670 * 55.00481 * 4 2 1 35 35 H 1.09006 * 109.47426 * 295.00006 * 4 2 1 36 36 H 1.09003 * 109.46890 * 60.00029 * 8 5 4 37 37 H 1.09003 * 109.47113 * 300.00070 * 8 5 4 38 38 H 1.09003 * 109.47160 * 60.00298 * 9 8 5 39 39 H 1.08993 * 109.47297 * 300.00281 * 9 8 5 40 40 H 0.96996 * 119.99886 * 174.99314 * 16 15 13 41 41 H 1.07997 * 120.45205 * 0.04036 * 22 21 12 42 42 H 1.07993 * 120.75081 * 180.02562 * 23 22 21 43 43 H 1.07999 * 120.34320 * 179.97438 * 24 23 22 44 44 H 1.07997 * 119.57851 * 179.74929 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 16 3.8479 -0.8514 1.1766 6 8 4.3991 0.4566 1.2468 7 8 4.1977 -1.6942 0.0874 8 6 4.2235 -1.7199 2.7243 9 6 5.7353 -1.9246 2.8402 10 6 6.0474 -2.6468 4.1256 11 8 5.1454 -3.0463 4.8310 12 7 7.3287 -2.8485 4.4912 13 6 8.3476 -2.3088 3.7474 14 1 8.3265 -1.2622 3.4817 15 6 9.4061 -3.1085 3.3359 16 7 9.3635 -4.4071 3.5325 17 14 10.8902 -2.3380 2.5033 18 1 11.8958 -1.9651 3.5303 19 1 11.4880 -3.3130 1.5561 20 1 10.4664 -1.1234 1.7615 21 6 7.6191 -3.6057 5.6254 22 6 8.9360 -3.7234 6.0567 23 6 9.2102 -4.4785 7.1835 24 6 8.1537 -5.0925 7.8424 25 6 6.8706 -4.9374 7.3547 26 7 6.6388 -4.2072 6.2811 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6054 -1.7198 1.2952 35 1 1.7516 -0.1582 2.1370 36 1 3.7247 -2.6891 2.7273 37 1 3.8710 -1.1272 3.5684 38 1 6.2345 -0.9556 2.8370 39 1 6.0875 -2.5175 1.9961 40 1 10.0678 -4.9741 3.1811 41 1 9.7338 -3.2321 5.5196 42 1 10.2230 -4.5875 7.5421 43 1 8.3337 -5.6891 8.7245 44 1 6.0460 -5.4165 7.8615 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892465838.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:20 Heat of formation + Delta-G solvation = -81.519822 kcal Electronic energy + Delta-G solvation = -27721.589334 eV Core-core repulsion = 23766.178793 eV Total energy + Delta-G solvation = -3955.410541 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.54927 -39.71493 -38.03879 -37.45812 -36.99215 -36.84048 -34.14490 -33.92284 -32.74916 -30.90875 -28.98431 -28.05471 -27.22964 -26.31416 -24.06397 -23.43944 -21.47858 -21.01695 -19.85592 -19.71714 -18.55396 -17.59191 -17.51838 -17.27431 -16.84545 -16.77871 -16.46725 -16.19259 -15.82423 -15.69062 -15.22530 -15.04095 -14.88251 -14.53280 -14.20533 -14.01575 -13.74881 -13.57720 -13.42768 -13.37042 -13.15559 -13.09075 -13.02819 -12.97971 -12.85853 -12.42483 -12.40400 -12.37882 -12.07187 -11.96329 -11.89885 -11.72999 -11.21483 -11.09294 -10.85192 -10.70647 -10.43834 -9.73298 -8.84624 -8.28533 -6.45206 -1.00183 0.51574 0.74537 1.41976 1.45304 1.56899 1.82516 1.96639 2.20584 2.48618 2.77056 2.88698 3.07614 3.41824 3.54139 3.57787 3.75038 3.80345 3.91901 4.05722 4.18936 4.20890 4.37246 4.51610 4.55152 4.57012 4.62699 4.65723 4.66231 4.78649 4.82505 4.92202 4.94360 5.02301 5.15937 5.20308 5.33337 5.36942 5.41254 5.41473 5.58347 5.86508 6.11358 6.35418 6.94062 7.10433 7.47094 7.92439 8.60431 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014751 B = 0.003287 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.716932 B = 8517.334663 C =10001.879624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 C -0.190 4.190 4 C -0.586 4.586 5 S 2.419 3.581 6 O -0.963 6.963 7 O -0.978 6.978 8 C -0.592 4.592 9 C -0.113 4.113 10 C 0.483 3.517 11 O -0.549 6.549 12 N -0.401 5.401 13 C -0.382 4.382 14 H 0.108 0.892 15 C 0.019 3.981 16 N -0.878 5.878 17 Si 0.982 3.018 18 H -0.263 1.263 19 H -0.280 1.280 20 H -0.255 1.255 21 C 0.348 3.652 22 C -0.161 4.161 23 C -0.078 4.078 24 C -0.217 4.217 25 C 0.089 3.911 26 N -0.533 5.533 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.161 0.839 35 H 0.163 0.837 36 H 0.143 0.857 37 H 0.150 0.850 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.277 0.723 41 H 0.124 0.876 42 H 0.152 0.848 43 H 0.161 0.839 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.560 6.230 -2.087 12.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 C -0.247 4.247 4 C -0.719 4.719 5 S 2.607 3.393 6 O -0.960 6.960 7 O -0.975 6.975 8 C -0.720 4.720 9 C -0.153 4.153 10 C 0.272 3.728 11 O -0.427 6.427 12 N -0.114 5.114 13 C -0.509 4.509 14 H 0.125 0.875 15 C -0.187 4.187 16 N -0.510 5.510 17 Si 0.804 3.196 18 H -0.188 1.188 19 H -0.205 1.205 20 H -0.179 1.179 21 C 0.118 3.882 22 C -0.185 4.185 23 C -0.104 4.104 24 C -0.238 4.238 25 C -0.069 4.069 26 N -0.249 5.249 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.179 0.821 35 H 0.181 0.819 36 H 0.161 0.839 37 H 0.168 0.832 38 H 0.128 0.872 39 H 0.117 0.883 40 H 0.087 0.913 41 H 0.142 0.858 42 H 0.169 0.831 43 H 0.179 0.821 44 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -11.148 6.308 -2.768 13.105 hybrid contribution 1.405 -0.540 0.392 1.556 sum -9.743 5.768 -2.376 11.569 Atomic orbital electron populations 1.21819 0.91579 1.03073 1.03252 1.20987 0.99494 0.96069 0.94729 1.22428 1.02384 0.95746 1.04173 1.30256 1.20182 1.12561 1.08863 1.07888 0.80304 0.74785 0.76345 1.93516 1.78125 1.37729 1.86601 1.93529 1.83493 1.69439 1.51062 1.30167 1.02737 1.16210 1.22897 1.21102 0.93989 1.03144 0.97085 1.21247 0.82655 0.81114 0.87799 1.90589 1.45752 1.51588 1.54782 1.41431 1.06191 1.43986 1.19748 1.19819 1.01318 0.96176 1.33600 0.87468 1.26381 1.01812 0.95127 0.95397 1.70089 1.34782 1.04836 1.41322 0.85090 0.77423 0.78659 0.78430 1.18750 1.20526 1.17883 1.19167 0.90007 0.92053 0.86935 1.21557 0.96038 1.03153 0.97747 1.21631 1.00531 0.94780 0.93471 1.22104 0.93082 1.04974 1.03661 1.22928 0.97459 0.94553 0.91978 1.67536 1.35806 1.11326 1.10241 0.91250 0.91179 0.91482 0.90191 0.90605 0.92157 0.90347 0.82113 0.81878 0.83917 0.83187 0.87249 0.88344 0.91330 0.85837 0.83075 0.82121 0.81507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.19 71.98 0.66 -0.93 16 2 C -0.09 -1.51 2.92 -10.79 -0.03 -1.54 16 3 C -0.19 -3.38 8.83 71.98 0.64 -2.74 16 4 C -0.59 -9.02 5.26 71.98 0.38 -8.64 16 5 S 2.42 62.53 4.51 -56.49 -0.25 62.28 16 6 O -0.96 -29.70 15.46 -127.37 -1.97 -31.67 16 7 O -0.98 -32.74 18.10 -127.37 -2.31 -35.04 16 8 C -0.59 -17.30 5.11 71.98 0.37 -16.93 16 9 C -0.11 -4.48 4.62 29.85 0.14 -4.34 16 10 C 0.48 24.03 7.58 87.66 0.66 24.70 16 11 O -0.55 -28.88 14.28 -3.03 -0.04 -28.93 16 12 N -0.40 -21.20 2.68 -464.37 -1.24 -22.44 16 13 C -0.38 -19.18 7.67 84.01 0.64 -18.54 16 14 H 0.11 5.02 7.36 -2.91 -0.02 4.99 16 15 C 0.02 0.94 3.59 84.91 0.31 1.25 16 16 N -0.88 -46.01 11.12 21.65 0.24 -45.77 16 17 Si 0.98 37.98 29.56 68.60 2.03 40.01 16 18 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 19 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 20 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 21 C 0.35 18.33 6.63 132.91 0.88 19.21 16 22 C -0.16 -7.66 7.61 22.51 0.17 -7.49 16 23 C -0.08 -3.01 10.17 22.45 0.23 -2.78 16 24 C -0.22 -7.61 10.11 22.39 0.23 -7.39 16 25 C 0.09 3.63 11.18 84.66 0.95 4.58 16 26 N -0.53 -27.26 7.92 -192.95 -1.53 -28.79 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 1.38 5.40 -2.38 -0.01 1.37 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 34 H 0.16 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.16 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.14 3.92 8.04 -2.39 -0.02 3.90 16 37 H 0.15 3.80 8.14 -2.39 -0.02 3.78 16 38 H 0.11 4.07 7.54 -2.39 -0.02 4.05 16 39 H 0.10 4.02 8.14 -2.39 -0.02 4.00 16 40 H 0.28 13.70 8.32 -92.71 -0.77 12.92 16 41 H 0.12 6.06 5.55 -2.91 -0.02 6.05 16 42 H 0.15 4.62 8.06 -2.91 -0.02 4.60 16 43 H 0.16 4.10 8.06 -2.91 -0.02 4.07 16 44 H 0.17 5.55 8.06 -2.91 -0.02 5.53 16 Total: -1.00 -77.79 373.22 2.14 -75.65 By element: Atomic # 1 Polarization: 35.29 SS G_CDS: 1.00 Total: 36.29 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: 6.22 Total: -21.58 kcal Atomic # 7 Polarization: -94.47 SS G_CDS: -2.53 Total: -97.00 kcal Atomic # 8 Polarization: -91.32 SS G_CDS: -4.32 Total: -95.64 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.03 Total: 40.01 kcal Atomic # 16 Polarization: 62.53 SS G_CDS: -0.25 Total: 62.28 kcal Total: -77.79 2.14 -75.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892465838.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.870 kcal (2) G-P(sol) polarization free energy of solvation -77.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds