Wall clock time and date at job start Sat Apr 11 2020 05:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46745 * 2 1 4 4 N 1.46495 * 109.47548 * 239.99566 * 2 1 3 5 5 S 1.65597 * 120.00167 * 171.60671 * 4 2 1 6 6 C 1.81392 * 104.45141 * 62.80968 * 5 4 2 7 7 O 1.42095 * 104.27724 * 178.88461 * 5 4 2 8 8 O 1.42107 * 104.27614 * 306.74050 * 5 4 2 9 9 C 1.50708 * 109.46808 * 119.99418 * 2 1 3 10 10 O 1.21283 * 119.99711 * 264.99973 * 9 2 1 11 11 N 1.34773 * 119.99655 * 85.00166 * 9 2 1 12 12 C 1.39924 * 120.00063 * 184.50724 * 11 9 2 13 13 C 1.38874 * 120.06880 * 324.58257 * 12 11 9 14 14 C 1.38119 * 119.92884 * 180.02562 * 13 12 11 15 15 C 1.38277 * 120.06927 * 0.02562 * 14 13 12 16 16 C 1.50696 * 119.92936 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.47312 * 90.00119 * 16 15 14 18 18 H 1.07994 * 119.99749 * 0.02562 * 17 16 15 19 19 C 1.37868 * 119.99934 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00621 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99848 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47139 * 60.00105 * 21 19 17 23 23 H 1.48505 * 109.47272 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47283 * 299.99816 * 21 19 17 25 25 C 1.38292 * 120.14268 * 0.25373 * 15 14 13 26 26 C 1.38108 * 120.06822 * 359.49074 * 25 15 14 27 27 H 1.09003 * 109.47421 * 300.00376 * 1 2 3 28 28 H 1.08997 * 109.46900 * 60.00499 * 1 2 3 29 29 H 1.09006 * 109.46885 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46879 * 171.60828 * 3 2 1 31 31 H 1.09004 * 109.46842 * 291.60471 * 3 2 1 32 32 H 1.08999 * 109.47342 * 51.60727 * 3 2 1 33 33 H 0.97002 * 119.99801 * 351.60672 * 4 2 1 34 34 H 1.09005 * 109.47366 * 54.02530 * 6 5 4 35 35 H 1.09005 * 109.47583 * 174.02381 * 6 5 4 36 36 H 1.09000 * 109.47182 * 294.02304 * 6 5 4 37 37 H 0.96999 * 120.00348 * 4.51803 * 11 9 2 38 38 H 1.08001 * 120.03584 * 0.02562 * 13 12 11 39 39 H 1.07998 * 119.96203 * 179.97438 * 14 13 12 40 40 H 1.09000 * 109.46997 * 210.00297 * 16 15 14 41 41 H 1.08999 * 109.47383 * 329.99993 * 16 15 14 42 42 H 0.96996 * 120.00403 * 180.02562 * 20 19 17 43 43 H 1.07991 * 119.96284 * 179.74136 * 25 15 14 44 44 H 1.07998 * 120.03910 * 180.25307 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6907 -1.1960 5 16 3.6321 -0.6632 -1.5671 6 6 4.4307 -1.5116 -0.1769 7 8 3.7326 -1.4424 -2.7511 8 8 3.9680 0.7176 -1.5681 9 6 2.0323 -0.7103 1.2306 10 8 2.3207 -0.0746 2.2224 11 7 2.1610 -2.0519 1.2289 12 6 2.5366 -2.7202 2.3994 13 6 3.4375 -2.1324 3.2777 14 6 3.8067 -2.7949 4.4320 15 6 3.2808 -4.0424 4.7132 16 6 3.6862 -4.7627 5.9733 17 6 2.7439 -4.3917 7.0894 18 1 1.9324 -3.7036 6.9046 19 6 2.9180 -4.9309 8.3463 20 7 3.9059 -5.7693 8.5713 21 14 1.7495 -4.4716 9.7295 22 1 0.3658 -4.8637 9.3594 23 1 2.1492 -5.1813 10.9713 24 1 1.8044 -3.0052 9.9575 25 6 2.3879 -4.6330 3.8378 26 6 2.0107 -3.9735 2.6845 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1196 1.4462 0.1500 31 1 1.8042 1.9112 -0.9555 32 1 1.5593 1.9978 0.8054 33 1 1.3966 -1.1641 -1.7706 34 1 3.9727 -2.4908 -0.0372 35 1 5.4931 -1.6343 -0.3880 36 1 4.3065 -0.9196 0.7298 37 1 1.9933 -2.5542 0.4162 38 1 3.8489 -1.1582 3.0584 39 1 4.5075 -2.3384 5.1153 40 1 3.6452 -5.8390 5.8058 41 1 4.7021 -4.4758 6.2450 42 1 4.0281 -6.1489 9.4555 43 1 1.9821 -5.6092 4.0582 44 1 1.3102 -4.4334 2.0032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928404169.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:28 Heat of formation + Delta-G solvation = -72.786003 kcal Electronic energy + Delta-G solvation = -28087.817337 eV Core-core repulsion = 24132.785522 eV Total energy + Delta-G solvation = -3955.031815 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.09737 -38.69389 -37.55567 -36.73248 -36.29477 -35.21616 -33.08163 -31.11952 -30.65737 -30.41852 -29.71892 -27.78295 -26.90946 -24.38079 -22.76768 -22.48610 -20.72489 -20.33723 -19.60874 -18.37220 -18.13506 -17.36968 -16.64582 -16.35213 -16.06597 -15.60918 -15.27245 -14.96276 -14.88350 -14.34344 -14.05363 -13.93914 -13.61071 -13.34101 -13.20077 -13.03661 -13.00585 -12.76417 -12.60458 -12.54217 -12.38917 -12.19641 -12.11822 -12.03907 -11.63666 -11.43761 -11.31976 -11.20773 -10.95175 -10.84581 -10.62415 -10.43519 -10.09477 -9.72392 -9.48587 -9.36313 -8.46268 -8.42031 -7.55824 -6.07768 -4.12109 -0.17908 1.60450 1.92271 2.09293 2.42650 2.78305 3.30027 3.33403 3.34122 3.37632 3.79588 4.05436 4.22091 4.31955 4.43404 4.44956 4.50107 4.57170 4.77125 5.17656 5.22064 5.25669 5.30270 5.39654 5.45973 5.48952 5.59139 5.65681 5.75971 5.90668 5.97076 6.04972 6.07615 6.36943 6.51424 6.60839 6.72558 7.04711 7.09231 7.23534 7.43042 7.57534 7.77531 7.86459 7.87753 8.27145 8.93018 9.52116 11.01837 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022257 B = 0.002636 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.716108 B =10619.961416 C =11096.864449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.163 3.837 3 C -0.159 4.159 4 N -1.114 6.114 5 S 2.605 3.395 6 C -0.676 4.676 7 O -0.956 6.956 8 O -0.946 6.946 9 C 0.486 3.514 10 O -0.498 6.498 11 N -0.666 5.666 12 C 0.094 3.906 13 C -0.116 4.116 14 C -0.109 4.109 15 C -0.037 4.037 16 C 0.047 3.953 17 C -0.514 4.514 18 H 0.057 0.943 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.896 3.104 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.109 4.109 26 C -0.139 4.139 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.422 0.578 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.130 0.870 37 H 0.404 0.596 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.029 0.971 41 H 0.029 0.971 42 H 0.263 0.737 43 H 0.123 0.877 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.605 9.228 -22.250 24.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.071 3.929 3 C -0.218 4.218 4 N -0.875 5.875 5 S 2.698 3.302 6 C -0.827 4.827 7 O -0.947 6.947 8 O -0.936 6.936 9 C 0.271 3.729 10 O -0.371 6.371 11 N -0.313 5.313 12 C 0.002 3.998 13 C -0.135 4.135 14 C -0.128 4.128 15 C -0.037 4.037 16 C 0.011 3.989 17 C -0.552 4.552 18 H 0.075 0.925 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.723 3.277 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.127 4.127 26 C -0.159 4.159 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.258 0.742 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.240 0.760 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.073 0.927 43 H 0.141 0.859 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.818 10.097 -22.053 24.553 hybrid contribution -1.115 -0.762 0.922 1.635 sum -4.933 9.335 -21.131 23.622 Atomic orbital electron populations 1.22014 0.90069 1.03793 1.04556 1.20527 0.98107 0.93298 0.80937 1.22390 1.03787 0.91680 1.03952 1.55897 1.27520 1.68082 1.35955 1.05035 0.73717 0.75600 0.75838 1.30831 1.15066 1.15619 1.21154 1.93630 1.85080 1.72703 1.43254 1.93650 1.82792 1.30618 1.86572 1.21227 0.78604 0.82602 0.90504 1.90792 1.46682 1.65572 1.34036 1.43609 1.68104 1.07015 1.12528 1.17516 0.99383 0.93864 0.89043 1.21087 0.96996 1.00243 0.95222 1.21039 1.00711 0.94900 0.96150 1.20767 0.92993 0.93928 0.96018 1.18363 0.97246 0.95236 0.88083 1.21014 1.13180 1.27203 0.93773 0.92506 1.25003 0.95570 0.94987 0.98704 1.69940 1.30368 1.30443 1.22552 0.86591 0.81175 0.78738 0.81148 1.20172 1.21212 1.20112 1.20913 0.98204 1.00325 0.93270 1.20773 1.01248 0.95035 0.98890 0.89901 0.90012 0.91149 0.89804 0.90107 0.90149 0.74202 0.84746 0.84654 0.85111 0.76005 0.85489 0.85963 0.95273 0.95256 0.92741 0.85895 0.86711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 8.57 37.16 0.32 -0.50 16 2 C 0.16 1.25 1.08 -132.97 -0.14 1.10 16 3 C -0.16 -1.40 6.66 37.16 0.25 -1.16 16 4 N -1.11 -6.50 4.67 -0.40 0.00 -6.51 16 5 S 2.61 20.95 5.99 -107.50 -0.64 20.30 16 6 C -0.68 -5.11 8.93 101.05 0.90 -4.20 16 7 O -0.96 -10.19 18.08 -57.54 -1.04 -11.23 16 8 O -0.95 -10.38 14.61 -57.54 -0.84 -11.22 16 9 C 0.49 5.27 3.98 -10.98 -0.04 5.23 16 10 O -0.50 -7.36 13.71 5.56 0.08 -7.28 16 11 N -0.67 -6.74 2.98 -9.86 -0.03 -6.77 16 12 C 0.09 1.34 6.27 -83.69 -0.52 0.81 16 13 C -0.12 -1.92 8.70 -39.39 -0.34 -2.26 16 14 C -0.11 -2.09 9.69 -39.61 -0.38 -2.47 16 15 C -0.04 -0.76 5.07 -104.59 -0.53 -1.29 16 16 C 0.05 1.19 5.10 -29.03 -0.15 1.04 16 17 C -0.51 -14.17 9.09 -34.44 -0.31 -14.49 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 21 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C -0.11 -1.95 9.69 -39.61 -0.38 -2.33 16 26 C -0.14 -2.03 9.97 -39.39 -0.39 -2.43 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.86 6.23 -51.92 -0.32 0.54 16 31 H 0.08 0.63 8.06 -51.93 -0.42 0.22 16 32 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 33 H 0.42 1.35 8.58 -34.47 -0.30 1.06 16 34 H 0.13 0.90 6.41 -51.92 -0.33 0.57 16 35 H 0.14 0.81 8.14 -51.92 -0.42 0.38 16 36 H 0.13 1.18 6.28 -51.92 -0.33 0.86 16 37 H 0.40 2.68 7.41 -40.82 -0.30 2.38 16 38 H 0.13 2.04 6.20 -52.49 -0.33 1.72 16 39 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 40 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 41 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 42 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 44 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 368.69 15.07 5.56 5.56 Total: -1.00 -35.78 368.69 -9.13 -44.92 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -6.09 Total: 2.58 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -1.84 Total: -21.39 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.71 Total: -38.60 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -1.80 Total: -29.73 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 20.95 SS G_CDS: -0.64 Total: 20.30 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.78 -9.13 -44.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928404169.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.871 kcal (2) G-P(sol) polarization free energy of solvation -35.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds