Wall clock time and date at job start Sat Apr 11 2020 05:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46745 * 2 1 4 4 N 1.46495 * 109.47548 * 239.99566 * 2 1 3 5 5 S 1.65597 * 120.00167 * 171.60671 * 4 2 1 6 6 C 1.81392 * 104.45141 * 62.80968 * 5 4 2 7 7 O 1.42095 * 104.27724 * 178.88461 * 5 4 2 8 8 O 1.42107 * 104.27614 * 306.74050 * 5 4 2 9 9 C 1.50708 * 109.46808 * 119.99418 * 2 1 3 10 10 O 1.21283 * 119.99711 * 264.99973 * 9 2 1 11 11 N 1.34773 * 119.99655 * 85.00166 * 9 2 1 12 12 C 1.39924 * 120.00063 * 184.50724 * 11 9 2 13 13 C 1.38874 * 120.06880 * 324.58257 * 12 11 9 14 14 C 1.38119 * 119.92884 * 180.02562 * 13 12 11 15 15 C 1.38277 * 120.06927 * 0.02562 * 14 13 12 16 16 C 1.50696 * 119.92936 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.47312 * 90.00119 * 16 15 14 18 18 H 1.07994 * 119.99749 * 0.02562 * 17 16 15 19 19 C 1.37868 * 119.99934 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00621 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99848 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47139 * 60.00105 * 21 19 17 23 23 H 1.48505 * 109.47272 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47283 * 299.99816 * 21 19 17 25 25 C 1.38292 * 120.14268 * 0.25373 * 15 14 13 26 26 C 1.38108 * 120.06822 * 359.49074 * 25 15 14 27 27 H 1.09003 * 109.47421 * 300.00376 * 1 2 3 28 28 H 1.08997 * 109.46900 * 60.00499 * 1 2 3 29 29 H 1.09006 * 109.46885 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46879 * 171.60828 * 3 2 1 31 31 H 1.09004 * 109.46842 * 291.60471 * 3 2 1 32 32 H 1.08999 * 109.47342 * 51.60727 * 3 2 1 33 33 H 0.97002 * 119.99801 * 351.60672 * 4 2 1 34 34 H 1.09005 * 109.47366 * 54.02530 * 6 5 4 35 35 H 1.09005 * 109.47583 * 174.02381 * 6 5 4 36 36 H 1.09000 * 109.47182 * 294.02304 * 6 5 4 37 37 H 0.96999 * 120.00348 * 4.51803 * 11 9 2 38 38 H 1.08001 * 120.03584 * 0.02562 * 13 12 11 39 39 H 1.07998 * 119.96203 * 179.97438 * 14 13 12 40 40 H 1.09000 * 109.46997 * 210.00297 * 16 15 14 41 41 H 1.08999 * 109.47383 * 329.99993 * 16 15 14 42 42 H 0.96996 * 120.00403 * 180.02562 * 20 19 17 43 43 H 1.07991 * 119.96284 * 179.74136 * 25 15 14 44 44 H 1.07998 * 120.03910 * 180.25307 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6907 -1.1960 5 16 3.6321 -0.6632 -1.5671 6 6 4.4307 -1.5116 -0.1769 7 8 3.7326 -1.4424 -2.7511 8 8 3.9680 0.7176 -1.5681 9 6 2.0323 -0.7103 1.2306 10 8 2.3207 -0.0746 2.2224 11 7 2.1610 -2.0519 1.2289 12 6 2.5366 -2.7202 2.3994 13 6 3.4375 -2.1324 3.2777 14 6 3.8067 -2.7949 4.4320 15 6 3.2808 -4.0424 4.7132 16 6 3.6862 -4.7627 5.9733 17 6 2.7439 -4.3917 7.0894 18 1 1.9324 -3.7036 6.9046 19 6 2.9180 -4.9309 8.3463 20 7 3.9059 -5.7693 8.5713 21 14 1.7495 -4.4716 9.7295 22 1 0.3658 -4.8637 9.3594 23 1 2.1492 -5.1813 10.9713 24 1 1.8044 -3.0052 9.9575 25 6 2.3879 -4.6330 3.8378 26 6 2.0107 -3.9735 2.6845 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1196 1.4462 0.1500 31 1 1.8042 1.9112 -0.9555 32 1 1.5593 1.9978 0.8054 33 1 1.3966 -1.1641 -1.7706 34 1 3.9727 -2.4908 -0.0372 35 1 5.4931 -1.6343 -0.3880 36 1 4.3065 -0.9196 0.7298 37 1 1.9933 -2.5542 0.4162 38 1 3.8489 -1.1582 3.0584 39 1 4.5075 -2.3384 5.1153 40 1 3.6452 -5.8390 5.8058 41 1 4.7021 -4.4758 6.2450 42 1 4.0281 -6.1489 9.4555 43 1 1.9821 -5.6092 4.0582 44 1 1.3102 -4.4334 2.0032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928404169.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:27 Heat of formation + Delta-G solvation = -99.061238 kcal Electronic energy + Delta-G solvation = -28088.956716 eV Core-core repulsion = 24132.785522 eV Total energy + Delta-G solvation = -3956.171194 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.05210 -39.92954 -38.35064 -37.50365 -37.05872 -36.45294 -35.00057 -32.25499 -31.84163 -31.64335 -30.39401 -28.66637 -28.25803 -25.74850 -24.22589 -23.76185 -21.93532 -21.32759 -20.38655 -19.19289 -18.79828 -18.53755 -18.39711 -17.35768 -16.89109 -16.82252 -16.50748 -16.08186 -15.97584 -15.66473 -15.19451 -14.70793 -14.51283 -14.49193 -14.32061 -14.22208 -14.00821 -13.76419 -13.62821 -13.34685 -13.33009 -13.24715 -13.18658 -13.01729 -12.85987 -12.71263 -12.60685 -12.48526 -12.23061 -12.02083 -11.89122 -11.74484 -11.61578 -11.40611 -10.98527 -10.61104 -10.46465 -9.77278 -8.93829 -8.19908 -6.34279 -0.84105 0.37344 0.55900 1.23585 1.39039 1.41328 1.49641 1.65624 1.85823 2.38923 2.68664 2.97322 3.09718 3.12812 3.33651 3.63618 3.82719 3.86769 3.94047 4.06279 4.14755 4.17987 4.38018 4.58462 4.62759 4.67844 4.73532 4.79594 4.81601 4.86392 5.03809 5.11760 5.21327 5.30607 5.31857 5.35994 5.40571 5.44151 5.58743 5.74503 6.01132 6.07463 6.10438 6.22567 6.30200 6.78430 6.96865 7.34382 8.87879 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022257 B = 0.002636 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.716108 B =10619.961416 C =11096.864449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.176 3.824 3 C -0.164 4.164 4 N -1.098 6.098 5 S 2.626 3.374 6 C -0.679 4.679 7 O -0.979 6.979 8 O -0.977 6.977 9 C 0.488 3.512 10 O -0.537 6.537 11 N -0.652 5.652 12 C 0.115 3.885 13 C -0.120 4.120 14 C -0.123 4.123 15 C -0.071 4.071 16 C 0.057 3.943 17 C -0.530 4.530 18 H 0.052 0.948 19 C 0.006 3.994 20 N -0.929 5.929 21 Si 0.963 3.037 22 H -0.266 1.266 23 H -0.280 1.280 24 H -0.271 1.271 25 C -0.115 4.115 26 C -0.123 4.123 27 H 0.075 0.925 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.439 0.561 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.117 0.883 37 H 0.426 0.574 38 H 0.131 0.869 39 H 0.108 0.892 40 H 0.008 0.992 41 H 0.000 1.000 42 H 0.266 0.734 43 H 0.125 0.875 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.153 9.579 -24.455 27.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.084 3.916 3 C -0.223 4.223 4 N -0.862 5.862 5 S 2.720 3.280 6 C -0.830 4.830 7 O -0.969 6.969 8 O -0.967 6.967 9 C 0.274 3.726 10 O -0.412 6.412 11 N -0.301 5.301 12 C 0.022 3.978 13 C -0.140 4.140 14 C -0.142 4.142 15 C -0.071 4.071 16 C 0.020 3.980 17 C -0.568 4.568 18 H 0.071 0.929 19 C -0.193 4.193 20 N -0.569 5.569 21 Si 0.787 3.213 22 H -0.191 1.191 23 H -0.205 1.205 24 H -0.196 1.196 25 C -0.133 4.133 26 C -0.143 4.143 27 H 0.094 0.906 28 H 0.123 0.877 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.278 0.722 34 H 0.165 0.835 35 H 0.169 0.831 36 H 0.136 0.864 37 H 0.266 0.734 38 H 0.149 0.851 39 H 0.126 0.874 40 H 0.026 0.974 41 H 0.018 0.982 42 H 0.075 0.925 43 H 0.143 0.857 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.390 10.437 -24.332 27.236 hybrid contribution -0.295 -0.815 1.506 1.738 sum -6.685 9.621 -22.826 25.657 Atomic orbital electron populations 1.22096 0.87744 1.05257 1.05371 1.20371 0.99528 0.92020 0.79712 1.22430 1.02727 0.92628 1.04536 1.55578 1.27060 1.67997 1.35554 1.04281 0.73888 0.74549 0.75303 1.30847 1.16470 1.15772 1.19927 1.93601 1.85615 1.73011 1.44712 1.93618 1.83496 1.32538 1.87018 1.21870 0.77350 0.82391 0.91018 1.90789 1.48176 1.66371 1.35871 1.43517 1.67473 1.07027 1.12041 1.17529 0.97303 0.93549 0.89443 1.21118 0.97670 1.00296 0.94868 1.20944 1.01161 0.94783 0.97320 1.20417 0.96092 0.94957 0.95656 1.18089 0.95385 0.94369 0.90166 1.21355 1.13437 1.26991 0.95016 0.92939 1.25898 0.97212 0.94824 1.01336 1.70062 1.32048 1.31527 1.23275 0.85534 0.79255 0.78529 0.77952 1.19051 1.20489 1.19634 1.20985 0.97649 1.00651 0.94055 1.21081 1.00742 0.94516 0.97933 0.90644 0.87747 0.89400 0.91576 0.88984 0.90266 0.72204 0.83536 0.83132 0.86413 0.73429 0.85134 0.87396 0.97382 0.98183 0.92542 0.85717 0.82078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.57 71.98 0.62 -0.44 16 2 C 0.18 2.18 1.08 2.86 0.00 2.18 16 3 C -0.16 -2.63 6.66 71.98 0.48 -2.15 16 4 N -1.10 -9.21 4.67 -155.18 -0.72 -9.93 16 5 S 2.63 36.85 5.99 -56.49 -0.34 36.51 16 6 C -0.68 -8.86 8.93 113.37 1.01 -7.85 16 7 O -0.98 -18.69 18.08 -127.65 -2.31 -20.99 16 8 O -0.98 -20.30 14.61 -127.65 -1.87 -22.16 16 9 C 0.49 9.37 3.98 87.66 0.35 9.72 16 10 O -0.54 -15.23 13.71 -3.04 -0.04 -15.27 16 11 N -0.65 -10.94 2.98 -303.50 -0.90 -11.85 16 12 C 0.11 2.98 6.27 38.15 0.24 3.22 16 13 C -0.12 -3.91 8.70 22.39 0.19 -3.72 16 14 C -0.12 -4.89 9.69 22.25 0.22 -4.67 16 15 C -0.07 -3.03 5.07 -19.84 -0.10 -3.13 16 16 C 0.06 3.02 5.10 29.10 0.15 3.16 16 17 C -0.53 -30.31 9.09 25.60 0.23 -30.07 16 18 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 19 C 0.01 0.32 5.46 84.65 0.46 0.78 16 20 N -0.93 -55.87 13.29 21.44 0.28 -55.59 16 21 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 25 C -0.11 -4.03 9.69 22.25 0.22 -3.82 16 26 C -0.12 -3.19 9.97 22.39 0.22 -2.97 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.10 0.34 8.14 -2.39 -0.02 0.33 16 29 H 0.09 0.37 8.14 -2.38 -0.02 0.35 16 30 H 0.07 1.31 6.23 -2.38 -0.01 1.30 16 31 H 0.09 1.25 8.06 -2.38 -0.02 1.23 16 32 H 0.08 1.27 8.10 -2.39 -0.02 1.25 16 33 H 0.44 0.94 8.58 -96.74 -0.83 0.11 16 34 H 0.15 1.50 6.41 -2.39 -0.02 1.49 16 35 H 0.15 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.12 1.97 6.28 -2.39 -0.02 1.95 16 37 H 0.43 3.62 7.41 -92.71 -0.69 2.94 16 38 H 0.13 4.19 6.20 -2.91 -0.02 4.17 16 39 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 40 H 0.01 0.44 8.08 -2.39 -0.02 0.42 16 41 H 0.00 -0.01 8.08 -2.39 -0.02 -0.03 16 42 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 43 H 0.12 4.26 8.06 -2.92 -0.02 4.24 16 44 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -80.65 368.69 -0.06 -80.71 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -0.48 Total: 11.96 kcal Atomic # 6 Polarization: -44.04 SS G_CDS: 4.29 Total: -39.75 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -1.34 Total: -77.37 kcal Atomic # 8 Polarization: -54.21 SS G_CDS: -4.21 Total: -58.42 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: 36.85 SS G_CDS: -0.34 Total: 36.51 kcal Total: -80.65 -0.06 -80.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928404169.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.356 kcal (2) G-P(sol) polarization free energy of solvation -80.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds