Wall clock time and date at job start Sat Apr 11 2020 05:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 C 1.52998 * 109.47289 * 239.99497 * 2 1 3 5 5 N 1.46499 * 109.47284 * 300.00271 * 4 2 1 6 6 S 1.65603 * 119.99926 * 164.99976 * 5 4 2 7 7 C 1.81397 * 104.44858 * 64.99830 * 6 5 4 8 8 O 1.42101 * 104.27747 * 181.07118 * 6 5 4 9 9 O 1.42102 * 104.27365 * 308.92700 * 6 5 4 10 10 N 1.46504 * 109.46994 * 119.99635 * 2 1 3 11 11 C 1.34777 * 120.00102 * 300.00521 * 10 2 1 12 12 O 1.21542 * 119.99946 * 359.97438 * 11 10 2 13 13 C 1.47883 * 119.99863 * 179.97438 * 11 10 2 14 14 C 1.39921 * 120.02945 * 359.97438 * 13 11 10 15 15 C 1.38323 * 120.36046 * 180.02562 * 14 13 11 16 16 C 1.37749 * 120.41447 * 359.97438 * 15 14 13 17 17 C 1.40751 * 120.03994 * 359.97438 * 16 15 14 18 18 C 1.41435 * 120.17888 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99792 * 24.39006 * 18 17 16 20 20 C 1.39937 * 120.00029 * 204.38102 * 18 17 16 21 21 N 1.30828 * 120.00202 * 17.86125 * 20 18 17 22 22 Si 1.86804 * 120.00094 * 197.85585 * 20 18 17 23 23 H 1.48503 * 109.46909 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46871 * 120.00054 * 22 20 18 25 25 H 1.48498 * 109.47266 * 240.00165 * 22 20 18 26 26 C 1.38999 * 120.02296 * 179.97438 * 13 11 10 27 27 H 1.09001 * 109.47154 * 299.99960 * 1 2 3 28 28 H 1.09000 * 109.47034 * 60.00576 * 1 2 3 29 29 H 1.09003 * 109.47174 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47189 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46967 * 300.00036 * 3 2 1 32 32 H 1.09002 * 109.47246 * 59.99460 * 3 2 1 33 33 H 1.08997 * 109.46737 * 60.00637 * 4 2 1 34 34 H 1.09007 * 109.46751 * 179.97438 * 4 2 1 35 35 H 0.96994 * 119.99886 * 344.99880 * 5 4 2 36 36 H 1.09002 * 109.47014 * 60.00073 * 7 6 5 37 37 H 1.08997 * 109.47170 * 180.02562 * 7 6 5 38 38 H 1.09004 * 109.47397 * 299.99865 * 7 6 5 39 39 H 0.97004 * 120.00290 * 119.99752 * 10 2 1 40 40 H 1.08001 * 119.81453 * 359.97438 * 14 13 11 41 41 H 1.08002 * 119.79194 * 180.02562 * 15 14 13 42 42 H 1.08000 * 119.98284 * 179.97438 * 16 15 14 43 43 H 0.96991 * 120.00411 * 180.02562 * 21 20 18 44 44 H 1.07997 * 120.20633 * 359.70283 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 1.5517 -2.1025 -1.2491 6 16 1.6257 -3.0070 -2.6344 7 6 3.4007 -3.1926 -2.9594 8 8 1.0524 -4.2549 -2.2692 9 8 1.0211 -2.1842 -3.6227 10 7 2.0183 -0.6906 1.1963 11 6 1.6926 -0.2301 2.4203 12 8 0.9942 0.7583 2.5318 13 6 2.1851 -0.9275 3.6278 14 6 2.9888 -2.0658 3.5002 15 6 3.4527 -2.7237 4.6250 16 6 3.1297 -2.2662 5.8835 17 6 2.3233 -1.1222 6.0318 18 6 1.9903 -0.6495 7.3225 19 1 2.6268 -0.8819 8.1635 20 6 0.8362 0.1195 7.5099 21 7 -0.1068 0.1155 6.6031 22 14 0.6421 1.1515 9.0548 23 1 1.8402 0.9836 9.9160 24 1 0.4987 2.5813 8.6802 25 1 -0.5667 0.7104 9.7961 26 6 1.8500 -0.4528 4.8905 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6768 -0.2075 -2.1391 34 1 3.1301 -0.7209 -1.2493 35 1 1.1850 -2.4873 -0.4377 36 1 3.8733 -3.6984 -2.1174 37 1 3.5445 -3.7819 -3.8650 38 1 3.8508 -2.2087 -3.0913 39 1 2.5760 -1.4793 1.1074 40 1 3.2475 -2.4330 2.5180 41 1 4.0728 -3.6013 4.5158 42 1 3.4954 -2.7855 6.7569 43 1 -0.9066 0.6488 6.7328 44 1 1.2339 0.4282 4.9939 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928862018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:35 Heat of formation + Delta-G solvation = -92.053457 kcal Electronic energy + Delta-G solvation = -27724.352732 eV Core-core repulsion = 23768.485418 eV Total energy + Delta-G solvation = -3955.867314 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.93086 -37.71043 -37.32717 -36.55523 -36.19747 -33.84366 -33.62864 -31.70972 -29.83855 -29.70059 -29.39785 -27.21098 -25.97983 -25.35346 -23.06816 -21.05373 -20.33471 -19.66808 -19.12849 -18.13732 -17.63410 -17.00235 -16.50732 -16.08520 -15.59926 -15.25796 -15.03254 -14.74405 -14.34801 -14.13156 -13.75965 -13.75614 -13.53374 -13.38120 -13.01033 -12.91419 -12.78739 -12.53696 -12.36312 -12.29940 -12.24824 -11.93956 -11.80465 -11.64564 -11.35383 -11.25541 -11.14812 -11.07743 -11.03354 -10.75727 -10.51871 -10.00537 -9.78814 -9.73106 -9.25461 -8.91352 -8.75672 -7.67492 -7.56366 -6.84120 -4.45168 -0.03550 2.16085 2.40819 2.77146 3.05698 3.09971 3.11999 3.49565 3.54336 3.81552 3.88301 3.89111 4.32661 4.42427 4.58519 4.61476 4.83308 5.04348 5.09643 5.27964 5.30913 5.52950 5.56725 5.59787 5.76864 5.89935 5.93389 6.02362 6.05356 6.22137 6.42285 6.51493 6.67006 6.68137 6.87089 6.95112 6.97824 7.17282 7.34157 7.65525 7.71820 7.88165 8.04703 8.15029 8.46819 8.76567 8.79370 8.91102 10.10341 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019120 B = 0.002742 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.062656 B =10209.551171 C =10955.947884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.172 3.828 3 C -0.164 4.164 4 C 0.112 3.888 5 N -1.119 6.119 6 S 2.615 3.385 7 C -0.675 4.675 8 O -0.957 6.957 9 O -0.958 6.958 10 N -0.733 5.733 11 C 0.569 3.431 12 O -0.538 6.538 13 C -0.129 4.129 14 C -0.220 4.220 15 C -0.097 4.097 16 C -0.213 4.213 17 C 0.098 3.902 18 C -0.459 4.459 19 H 0.081 0.919 20 C 0.073 3.927 21 N -0.781 5.781 22 Si 0.909 3.091 23 H -0.260 1.260 24 H -0.270 1.270 25 H -0.274 1.274 26 C -0.091 4.091 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.422 0.578 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.397 0.603 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.284 0.716 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.202 -2.100 -16.294 17.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.085 3.915 3 C -0.223 4.223 4 C -0.015 4.015 5 N -0.880 5.880 6 S 2.707 3.293 7 C -0.824 4.824 8 O -0.948 6.948 9 O -0.947 6.947 10 N -0.388 5.388 11 C 0.360 3.640 12 O -0.416 6.416 13 C -0.133 4.133 14 C -0.241 4.241 15 C -0.115 4.115 16 C -0.233 4.233 17 C 0.096 3.904 18 C -0.488 4.488 19 H 0.099 0.901 20 C -0.146 4.146 21 N -0.406 5.406 22 Si 0.733 3.267 23 H -0.183 1.183 24 H -0.195 1.195 25 H -0.199 1.199 26 C -0.111 4.111 27 H 0.104 0.896 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.259 0.741 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.233 0.767 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.095 0.905 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.796 -1.537 -16.937 17.670 hybrid contribution 0.755 -0.149 1.080 1.326 sum 5.551 -1.686 -15.857 16.885 Atomic orbital electron populations 1.22231 0.93717 1.02555 1.03737 1.20358 0.95103 0.92561 0.83510 1.22215 1.00991 0.94988 1.04085 1.21702 0.98635 0.81334 0.99795 1.55586 1.78767 1.23035 1.30603 1.04691 0.77386 0.73647 0.73593 1.30542 1.28047 1.11735 1.12113 1.93639 1.75311 1.43647 1.82182 1.93615 1.73153 1.68258 1.59721 1.46102 1.55170 1.32521 1.05006 1.18763 0.78817 0.83408 0.83006 1.90637 1.37786 1.26386 1.86743 1.19487 1.02996 0.98211 0.92559 1.20308 1.07207 1.00134 0.96404 1.20425 0.99606 0.98401 0.93090 1.21094 1.07794 0.98927 0.95437 1.17612 0.89962 0.89573 0.93270 1.19627 1.06636 1.27927 0.94566 0.90064 1.25966 0.94905 0.95444 0.98288 1.69791 1.05363 1.31520 1.33878 0.86242 0.79201 0.79923 0.81298 1.18347 1.19542 1.19900 1.21632 0.99921 1.00130 0.89461 0.89649 0.91999 0.92549 0.92525 0.91894 0.89355 0.88682 0.91092 0.74138 0.85031 0.85427 0.85392 0.76698 0.89409 0.88989 0.88676 0.90464 0.84830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 8.23 37.16 0.31 -1.90 16 2 C 0.17 2.06 0.73 -131.82 -0.10 1.97 16 3 C -0.16 -1.97 8.40 37.16 0.31 -1.65 16 4 C 0.11 0.93 5.06 -4.04 -0.02 0.91 16 5 N -1.12 -9.43 5.17 -10.61 -0.05 -9.48 16 6 S 2.62 21.66 6.10 -107.50 -0.66 21.00 16 7 C -0.67 -3.01 10.89 101.05 1.10 -1.91 16 8 O -0.96 -11.72 18.08 -57.54 -1.04 -12.76 16 9 O -0.96 -11.08 17.50 -57.54 -1.01 -12.09 16 10 N -0.73 -10.46 4.65 -48.53 -0.23 -10.68 16 11 C 0.57 11.23 7.19 -12.31 -0.09 11.14 16 12 O -0.54 -12.03 12.54 5.33 0.07 -11.96 16 13 C -0.13 -2.87 5.87 -105.04 -0.62 -3.49 16 14 C -0.22 -4.36 9.55 -38.92 -0.37 -4.73 16 15 C -0.10 -1.98 10.01 -39.73 -0.40 -2.38 16 16 C -0.21 -4.91 9.78 -38.81 -0.38 -5.29 16 17 C 0.10 2.53 5.57 -106.87 -0.60 1.93 16 18 C -0.46 -11.79 9.05 -37.73 -0.34 -12.13 16 19 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 20 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 21 N -0.78 -20.21 10.95 55.55 0.61 -19.60 16 22 Si 0.91 18.42 29.60 -169.99 -5.03 13.39 16 23 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 25 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 26 C -0.09 -2.34 8.23 -38.44 -0.32 -2.65 16 27 H 0.08 1.43 6.16 -51.93 -0.32 1.11 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.74 7.20 -51.93 -0.37 0.37 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.09 1.37 6.16 -51.93 -0.32 1.05 16 33 H 0.10 0.71 7.69 -51.93 -0.40 0.31 16 34 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 35 H 0.42 3.85 7.50 -34.47 -0.26 3.60 16 36 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 37 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.13 0.38 8.14 -51.92 -0.42 -0.04 16 39 H 0.40 4.81 6.18 -40.82 -0.25 4.56 16 40 H 0.09 1.39 6.38 -52.49 -0.33 1.05 16 41 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 43 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 44 H 0.13 3.71 5.74 -52.49 -0.30 3.41 16 LS Contribution 371.93 15.07 5.60 5.60 Total: -1.00 -33.75 371.93 -9.24 -42.99 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -5.91 Total: 12.05 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -1.59 Total: -18.46 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.33 Total: -39.77 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -1.98 Total: -36.81 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Atomic # 16 Polarization: 21.66 SS G_CDS: -0.66 Total: 21.00 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.75 -9.24 -42.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928862018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.060 kcal (2) G-P(sol) polarization free energy of solvation -33.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds