Wall clock time and date at job start Sat Apr 11 2020 05:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 C 1.52998 * 109.47289 * 239.99497 * 2 1 3 5 5 N 1.46499 * 109.47284 * 300.00271 * 4 2 1 6 6 S 1.65603 * 119.99926 * 164.99976 * 5 4 2 7 7 C 1.81397 * 104.44858 * 64.99830 * 6 5 4 8 8 O 1.42101 * 104.27747 * 181.07118 * 6 5 4 9 9 O 1.42102 * 104.27365 * 308.92700 * 6 5 4 10 10 N 1.46504 * 109.46994 * 119.99635 * 2 1 3 11 11 C 1.34777 * 120.00102 * 300.00521 * 10 2 1 12 12 O 1.21542 * 119.99946 * 359.97438 * 11 10 2 13 13 C 1.47883 * 119.99863 * 179.97438 * 11 10 2 14 14 C 1.39921 * 120.02945 * 359.97438 * 13 11 10 15 15 C 1.38323 * 120.36046 * 180.02562 * 14 13 11 16 16 C 1.37749 * 120.41447 * 359.97438 * 15 14 13 17 17 C 1.40751 * 120.03994 * 359.97438 * 16 15 14 18 18 C 1.41435 * 120.17888 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99792 * 24.39006 * 18 17 16 20 20 C 1.39937 * 120.00029 * 204.38102 * 18 17 16 21 21 N 1.30828 * 120.00202 * 17.86125 * 20 18 17 22 22 Si 1.86804 * 120.00094 * 197.85585 * 20 18 17 23 23 H 1.48503 * 109.46909 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46871 * 120.00054 * 22 20 18 25 25 H 1.48498 * 109.47266 * 240.00165 * 22 20 18 26 26 C 1.38999 * 120.02296 * 179.97438 * 13 11 10 27 27 H 1.09001 * 109.47154 * 299.99960 * 1 2 3 28 28 H 1.09000 * 109.47034 * 60.00576 * 1 2 3 29 29 H 1.09003 * 109.47174 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47189 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46967 * 300.00036 * 3 2 1 32 32 H 1.09002 * 109.47246 * 59.99460 * 3 2 1 33 33 H 1.08997 * 109.46737 * 60.00637 * 4 2 1 34 34 H 1.09007 * 109.46751 * 179.97438 * 4 2 1 35 35 H 0.96994 * 119.99886 * 344.99880 * 5 4 2 36 36 H 1.09002 * 109.47014 * 60.00073 * 7 6 5 37 37 H 1.08997 * 109.47170 * 180.02562 * 7 6 5 38 38 H 1.09004 * 109.47397 * 299.99865 * 7 6 5 39 39 H 0.97004 * 120.00290 * 119.99752 * 10 2 1 40 40 H 1.08001 * 119.81453 * 359.97438 * 14 13 11 41 41 H 1.08002 * 119.79194 * 180.02562 * 15 14 13 42 42 H 1.08000 * 119.98284 * 179.97438 * 16 15 14 43 43 H 0.96991 * 120.00411 * 180.02562 * 21 20 18 44 44 H 1.07997 * 120.20633 * 359.70283 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 1.5517 -2.1025 -1.2491 6 16 1.6257 -3.0070 -2.6344 7 6 3.4007 -3.1926 -2.9594 8 8 1.0524 -4.2549 -2.2692 9 8 1.0211 -2.1842 -3.6227 10 7 2.0183 -0.6906 1.1963 11 6 1.6926 -0.2301 2.4203 12 8 0.9942 0.7583 2.5318 13 6 2.1851 -0.9275 3.6278 14 6 2.9888 -2.0658 3.5002 15 6 3.4527 -2.7237 4.6250 16 6 3.1297 -2.2662 5.8835 17 6 2.3233 -1.1222 6.0318 18 6 1.9903 -0.6495 7.3225 19 1 2.6268 -0.8819 8.1635 20 6 0.8362 0.1195 7.5099 21 7 -0.1068 0.1155 6.6031 22 14 0.6421 1.1515 9.0548 23 1 1.8402 0.9836 9.9160 24 1 0.4987 2.5813 8.6802 25 1 -0.5667 0.7104 9.7961 26 6 1.8500 -0.4528 4.8905 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6768 -0.2075 -2.1391 34 1 3.1301 -0.7209 -1.2493 35 1 1.1850 -2.4873 -0.4377 36 1 3.8733 -3.6984 -2.1174 37 1 3.5445 -3.7819 -3.8650 38 1 3.8508 -2.2087 -3.0913 39 1 2.5760 -1.4793 1.1074 40 1 3.2475 -2.4330 2.5180 41 1 4.0728 -3.6013 4.5158 42 1 3.4954 -2.7855 6.7569 43 1 -0.9066 0.6488 6.7328 44 1 1.2339 0.4282 4.9939 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928862018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:34 Heat of formation + Delta-G solvation = -118.404774 kcal Electronic energy + Delta-G solvation = -27725.495411 eV Core-core repulsion = 23768.485418 eV Total energy + Delta-G solvation = -3957.009993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.28654 -39.19016 -38.17214 -37.85101 -36.95144 -35.61354 -34.61731 -33.06937 -31.39033 -31.06720 -30.20365 -28.24559 -27.19894 -26.73008 -24.61115 -22.80136 -21.65798 -20.50435 -20.32739 -19.56997 -18.59632 -18.09911 -17.36516 -17.11833 -16.94070 -16.63972 -16.41395 -15.84356 -15.72944 -15.54020 -15.05201 -14.84887 -14.49133 -14.24931 -14.17768 -14.03789 -13.83862 -13.66475 -13.50592 -13.20587 -13.14022 -13.09331 -13.01946 -12.88239 -12.82209 -12.74306 -12.49285 -12.19032 -12.14278 -12.10416 -11.91071 -11.74373 -11.47657 -11.07084 -10.47030 -10.38755 -10.07289 -9.44004 -9.35188 -8.65989 -6.36802 -0.61540 0.43840 1.02790 1.36192 1.46724 1.51928 1.78888 2.16459 2.20437 2.28516 2.81331 2.96140 3.32468 3.53428 3.72834 3.97194 4.05076 4.09153 4.15564 4.28148 4.45022 4.48814 4.59597 4.63227 4.73544 4.78927 4.85773 4.92804 4.98252 4.99987 5.05239 5.10629 5.21731 5.31997 5.38104 5.44861 5.54584 5.67205 5.90002 5.96121 5.99023 6.08054 6.32002 6.56026 6.77925 6.89863 6.97027 7.44127 8.30411 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019120 B = 0.002742 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.062656 B =10209.551171 C =10955.947884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.168 3.832 3 C -0.162 4.162 4 C 0.114 3.886 5 N -1.123 6.123 6 S 2.622 3.378 7 C -0.650 4.650 8 O -1.005 7.005 9 O -0.998 6.998 10 N -0.708 5.708 11 C 0.565 3.435 12 O -0.573 6.573 13 C -0.139 4.139 14 C -0.197 4.197 15 C -0.097 4.097 16 C -0.220 4.220 17 C 0.066 3.934 18 C -0.498 4.498 19 H 0.081 0.919 20 C 0.030 3.970 21 N -0.824 5.824 22 Si 0.980 3.020 23 H -0.252 1.252 24 H -0.270 1.270 25 H -0.265 1.265 26 C -0.130 4.130 27 H 0.044 0.956 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.045 0.955 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.419 0.581 36 H 0.150 0.850 37 H 0.144 0.856 38 H 0.154 0.846 39 H 0.412 0.588 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.104 0.896 43 H 0.285 0.715 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.225 -3.459 -18.772 21.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.082 3.918 3 C -0.221 4.221 4 C -0.012 4.012 5 N -0.883 5.883 6 S 2.718 3.282 7 C -0.804 4.804 8 O -0.996 6.996 9 O -0.988 6.988 10 N -0.362 5.362 11 C 0.355 3.645 12 O -0.453 6.453 13 C -0.143 4.143 14 C -0.216 4.216 15 C -0.115 4.115 16 C -0.240 4.240 17 C 0.064 3.936 18 C -0.528 4.528 19 H 0.099 0.901 20 C -0.184 4.184 21 N -0.450 5.450 22 Si 0.801 3.199 23 H -0.175 1.175 24 H -0.195 1.195 25 H -0.190 1.190 26 C -0.151 4.151 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.254 0.746 36 H 0.169 0.831 37 H 0.162 0.838 38 H 0.172 0.828 39 H 0.250 0.750 40 H 0.158 0.842 41 H 0.155 0.845 42 H 0.122 0.878 43 H 0.096 0.904 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.805 -2.923 -19.445 21.156 hybrid contribution -0.053 0.162 1.627 1.636 sum 7.751 -2.761 -17.818 19.626 Atomic orbital electron populations 1.22204 0.95327 1.02106 1.02630 1.20565 0.94006 0.93228 0.84023 1.22168 1.02022 0.94616 1.03256 1.21817 1.00994 0.80754 0.97633 1.55494 1.79399 1.23167 1.30210 1.04276 0.79206 0.72132 0.72564 1.30319 1.22346 1.14018 1.13716 1.93578 1.77867 1.45397 1.82726 1.93562 1.75767 1.68817 1.60682 1.45865 1.53969 1.32421 1.03954 1.18553 0.78796 0.83043 0.84125 1.90642 1.39320 1.27941 1.87414 1.19871 1.02809 0.99064 0.92509 1.20874 1.04082 0.97847 0.98827 1.20918 0.99232 0.99395 0.91909 1.21390 1.07039 0.98171 0.97418 1.17949 0.91267 0.90922 0.93483 1.19870 1.07665 1.30263 0.94958 0.90086 1.26809 0.94169 0.96091 1.01378 1.69891 1.06033 1.32920 1.36106 0.85189 0.79467 0.77852 0.77415 1.17526 1.19516 1.19008 1.21431 1.01923 1.00319 0.91403 0.93717 0.90121 0.92666 0.90768 0.89322 0.93625 0.87321 0.86944 0.74603 0.83135 0.83782 0.82766 0.75003 0.84230 0.84518 0.87772 0.90412 0.88398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.39 8.23 71.98 0.59 -3.80 16 2 C 0.17 3.67 0.73 3.60 0.00 3.67 16 3 C -0.16 -3.59 8.40 71.98 0.60 -2.99 16 4 C 0.11 1.41 5.06 86.38 0.44 1.84 16 5 N -1.12 -15.28 5.17 -187.49 -0.97 -16.25 16 6 S 2.62 36.29 6.10 -56.49 -0.34 35.94 16 7 C -0.65 -2.20 10.89 113.37 1.23 -0.96 16 8 O -1.01 -23.30 18.08 -127.65 -2.31 -25.61 16 9 O -1.00 -21.16 17.50 -127.65 -2.23 -23.40 16 10 N -0.71 -18.66 4.65 -425.73 -1.98 -20.64 16 11 C 0.57 22.48 7.19 86.80 0.62 23.10 16 12 O -0.57 -27.11 12.54 -3.85 -0.05 -27.16 16 13 C -0.14 -6.21 5.87 -20.13 -0.12 -6.33 16 14 C -0.20 -7.16 9.55 22.70 0.22 -6.94 16 15 C -0.10 -3.65 10.01 22.17 0.22 -3.43 16 16 C -0.22 -10.10 9.78 22.77 0.22 -9.88 16 17 C 0.07 3.53 5.57 -21.32 -0.12 3.42 16 18 C -0.50 -27.02 9.05 23.47 0.21 -26.81 16 19 H 0.08 4.18 7.91 -2.91 -0.02 4.15 16 20 C 0.03 1.59 5.14 85.25 0.44 2.02 16 21 N -0.82 -45.75 10.95 21.82 0.24 -45.51 16 22 Si 0.98 39.64 29.60 68.60 2.03 41.67 16 23 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 24 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 25 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 26 C -0.13 -7.03 8.23 23.01 0.19 -6.84 16 27 H 0.04 1.57 6.16 -2.39 -0.01 1.56 16 28 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 1.45 7.20 -2.39 -0.02 1.43 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.04 1.44 6.16 -2.39 -0.01 1.42 16 33 H 0.11 1.14 7.69 -2.39 -0.02 1.13 16 34 H 0.11 0.53 8.14 -2.38 -0.02 0.52 16 35 H 0.42 6.58 7.50 -96.75 -0.73 5.85 16 36 H 0.15 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.14 0.19 8.14 -2.39 -0.02 0.17 16 38 H 0.15 -0.15 8.14 -2.39 -0.02 -0.17 16 39 H 0.41 8.22 6.18 -92.71 -0.57 7.64 16 40 H 0.14 3.59 6.38 -2.91 -0.02 3.57 16 41 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 42 H 0.10 4.46 8.06 -2.91 -0.02 4.43 16 43 H 0.29 14.62 8.30 -92.71 -0.77 13.85 16 44 H 0.10 5.93 5.74 -2.91 -0.02 5.92 16 Total: -1.00 -82.26 371.93 -1.11 -83.36 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: -0.25 Total: 31.50 kcal Atomic # 6 Polarization: -38.68 SS G_CDS: 4.76 Total: -33.92 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -2.71 Total: -82.40 kcal Atomic # 8 Polarization: -71.58 SS G_CDS: -4.59 Total: -76.17 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Atomic # 16 Polarization: 36.29 SS G_CDS: -0.34 Total: 35.94 kcal Total: -82.26 -1.11 -83.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928862018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.041 kcal (2) G-P(sol) polarization free energy of solvation -82.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds