Wall clock time and date at job start Sat Apr 11 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47533 * 2 1 4 4 N 1.46896 * 109.47370 * 185.22492 * 3 2 1 5 5 C 1.46900 * 110.99906 * 64.98362 * 4 3 2 6 6 C 1.50704 * 109.47021 * 66.04779 * 5 4 3 7 7 O 1.21289 * 119.99986 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00283 * 179.97438 * 6 5 4 9 9 C 1.39967 * 120.00216 * 175.26812 * 8 6 5 10 10 C 1.38866 * 120.06034 * 215.00691 * 9 8 6 11 11 C 1.38106 * 119.94427 * 179.79066 * 10 9 8 12 12 C 1.38390 * 120.05655 * 0.48798 * 11 10 9 13 13 Cl 1.73596 * 119.94232 * 179.72226 * 12 11 10 14 14 C 1.38383 * 120.11187 * 359.74193 * 12 11 10 15 15 C 1.38102 * 120.05840 * 0.02562 * 14 12 11 16 16 C 1.46903 * 110.99936 * 301.03467 * 4 3 2 17 17 C 1.53001 * 109.47044 * 288.84663 * 16 4 3 18 18 H 1.09005 * 109.46812 * 60.23497 * 17 16 4 19 19 O 1.42901 * 109.47218 * 300.23670 * 17 16 4 20 20 C 1.50691 * 109.47281 * 180.23124 * 17 16 4 21 21 H 1.08003 * 120.00246 * 0.02562 * 20 17 16 22 22 C 1.37881 * 120.00083 * 179.97438 * 20 17 16 23 23 N 1.31507 * 119.99950 * 0.02562 * 22 20 17 24 24 Si 1.86805 * 119.99839 * 180.02562 * 22 20 17 25 25 H 1.48507 * 109.46844 * 60.00419 * 24 22 20 26 26 H 1.48502 * 109.46949 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47223 * 300.00077 * 24 22 20 28 28 H 1.09003 * 109.47230 * 59.99523 * 1 2 3 29 29 H 1.08994 * 109.47544 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46997 * 300.00493 * 1 2 3 31 31 H 1.09001 * 109.46569 * 240.00048 * 2 1 3 32 32 H 1.09004 * 109.46808 * 120.00145 * 2 1 3 33 33 H 1.09000 * 109.46891 * 65.22343 * 3 2 1 34 34 H 1.08998 * 109.46942 * 305.22500 * 3 2 1 35 35 H 1.08995 * 109.47584 * 306.04835 * 5 4 3 36 36 H 1.09003 * 109.47401 * 186.04634 * 5 4 3 37 37 H 0.96998 * 119.99613 * 355.27492 * 8 6 5 38 38 H 1.08003 * 120.02598 * 359.97438 * 10 9 8 39 39 H 1.08005 * 119.97338 * 180.23412 * 11 10 9 40 40 H 1.08004 * 119.96507 * 179.97438 * 14 12 11 41 41 H 1.08004 * 120.02551 * 179.97438 * 15 14 12 42 42 H 1.08997 * 109.46995 * 48.84785 * 16 4 3 43 43 H 1.09000 * 109.46885 * 168.84755 * 16 4 3 44 44 H 0.96703 * 113.99759 * 300.00043 * 19 17 16 45 45 H 0.97001 * 119.99986 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5036 1.4443 -0.1261 5 6 3.9206 0.9031 -1.4265 6 6 3.4649 1.8284 -2.5253 7 8 2.8526 2.8391 -2.2519 8 7 3.7378 1.5330 -3.8116 9 6 3.2303 2.3386 -4.8376 10 6 2.8490 1.7690 -6.0453 11 6 2.3446 2.5655 -7.0544 12 6 2.2284 3.9317 -6.8665 13 17 1.6006 4.9311 -8.1396 14 6 2.6121 4.5024 -5.6657 15 6 3.1126 3.7097 -4.6517 16 6 4.1281 0.7026 0.9775 17 6 3.9856 1.5020 2.2742 18 1 2.9286 1.6522 2.4941 19 8 4.6259 2.7707 2.1245 20 6 4.6311 0.7438 3.4053 21 1 5.0969 -0.2125 3.2179 22 6 4.6281 1.2713 4.6792 23 7 4.0614 2.4359 4.9072 24 14 5.4289 0.3317 6.0811 25 1 6.8689 0.1271 5.7809 26 1 5.2905 1.1075 7.3397 27 1 4.7636 -0.9867 6.2371 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.7552 1.9286 0.9331 34 1 1.6024 1.9826 -0.8395 35 1 3.4735 -0.0804 -1.5711 36 1 5.0069 0.8157 -1.4524 37 1 4.2857 0.7620 -4.0264 38 1 2.9442 0.7035 -6.1942 39 1 2.0444 2.1225 -7.9925 40 1 2.5207 5.5689 -5.5217 41 1 3.4123 4.1557 -3.7148 42 1 3.6360 -0.2634 1.0902 43 1 5.1850 0.5488 0.7597 44 1 5.5708 2.7135 1.9270 45 1 4.0590 2.8068 5.8035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929978300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:38 Heat of formation + Delta-G solvation = -56.285075 kcal Electronic energy + Delta-G solvation = -27155.272323 eV Core-core repulsion = 23198.912336 eV Total energy + Delta-G solvation = -3956.359987 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.77226 -39.06601 -37.62201 -36.65263 -35.06045 -34.71577 -32.53732 -32.04360 -31.34708 -30.19737 -28.70856 -27.07566 -25.48694 -23.68380 -23.26685 -22.48119 -21.67961 -20.44382 -19.31281 -18.07553 -17.20924 -16.93685 -16.77082 -16.03153 -15.38212 -15.33665 -14.71971 -14.59180 -14.40079 -14.26641 -13.91692 -13.81008 -13.70469 -13.64287 -13.25181 -13.05389 -12.56535 -12.45684 -12.23611 -11.83913 -11.72453 -11.57924 -11.43623 -11.18466 -11.12699 -11.04696 -10.91334 -10.83064 -10.64651 -10.34710 -10.15162 -10.04116 -9.65584 -9.29867 -8.97792 -8.55280 -8.32318 -8.09400 -7.59986 -5.98724 -4.17802 0.81189 1.02344 1.90093 2.52068 2.77758 3.28254 3.34338 3.35017 3.40517 4.29520 4.45551 4.49490 4.59726 4.68460 4.96342 5.10357 5.14251 5.16911 5.23237 5.28716 5.37099 5.38330 5.53422 5.62587 5.71908 5.80410 5.92225 5.98354 6.02111 6.08692 6.10851 6.14726 6.21415 6.30165 6.44521 6.57216 6.64449 6.75962 6.81478 7.11171 7.46804 7.54756 7.77633 7.89734 8.07509 8.21154 8.85991 9.48731 9.65766 11.05158 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022477 B = 0.002127 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.392188 B =13162.655604 C =13517.534594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.167 4.167 3 C 0.051 3.949 4 N -0.505 5.505 5 C 0.032 3.968 6 C 0.514 3.486 7 O -0.489 6.489 8 N -0.683 5.683 9 C 0.159 3.841 10 C -0.139 4.139 11 C -0.092 4.092 12 C -0.055 4.055 13 Cl -0.077 7.077 14 C -0.090 4.090 15 C -0.110 4.110 16 C 0.026 3.974 17 C 0.241 3.759 18 H 0.054 0.946 19 O -0.552 6.552 20 C -0.576 4.576 21 H 0.053 0.947 22 C 0.080 3.920 23 N -0.856 5.856 24 Si 0.888 3.112 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.277 1.277 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.411 0.589 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.152 0.848 42 H 0.037 0.963 43 H 0.061 0.939 44 H 0.341 0.659 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.463 -3.574 -24.198 24.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.206 4.206 3 C -0.077 4.077 4 N -0.228 5.228 5 C -0.099 4.099 6 C 0.302 3.698 7 O -0.361 6.361 8 N -0.329 5.329 9 C 0.064 3.936 10 C -0.159 4.159 11 C -0.112 4.112 12 C -0.082 4.082 13 Cl -0.048 7.048 14 C -0.109 4.109 15 C -0.130 4.130 16 C -0.101 4.101 17 C 0.183 3.817 18 H 0.072 0.928 19 O -0.353 6.353 20 C -0.614 4.614 21 H 0.071 0.929 22 C -0.126 4.126 23 N -0.491 5.491 24 Si 0.716 3.284 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.203 1.203 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.120 0.880 37 H 0.246 0.754 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.154 0.846 41 H 0.169 0.831 42 H 0.055 0.945 43 H 0.080 0.920 44 H 0.183 0.817 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.463 -1.913 -23.703 24.031 hybrid contribution 0.946 -2.096 0.414 2.337 sum -2.517 -4.009 -23.289 23.765 Atomic orbital electron populations 1.21640 0.95710 1.01020 1.01820 1.22235 0.96568 1.00105 1.01651 1.22388 0.86869 0.94388 1.04088 1.62024 1.08080 1.53541 0.99121 1.22029 1.02125 0.95245 0.90535 1.21103 0.78918 0.87248 0.82527 1.90699 1.37750 1.25598 1.82024 1.43704 1.53117 1.30895 1.05226 1.17860 0.96855 0.90451 0.88399 1.20850 1.01974 1.00074 0.93050 1.20791 0.99414 0.91369 0.99603 1.20900 1.04542 0.91837 0.90956 1.98363 1.85818 1.69619 1.51016 1.21011 0.98010 1.00824 0.91050 1.21385 0.99830 0.91710 1.00070 1.23239 0.97608 0.96185 0.93051 1.19259 0.94581 0.81155 0.86739 0.92789 1.86598 1.23416 1.31597 1.93695 1.21595 1.40047 1.06013 0.93748 0.92871 1.25020 0.94516 0.94515 0.98570 1.70072 1.41497 1.16415 1.21160 0.86757 0.80018 0.79954 0.81716 1.20183 1.21213 1.20264 0.93209 0.93281 0.92326 0.93084 0.91012 0.89761 0.89990 0.91912 0.87973 0.75354 0.84847 0.84749 0.84611 0.83055 0.94526 0.92040 0.81663 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.91 37.16 0.37 -1.51 16 2 C -0.17 -2.43 5.24 -26.73 -0.14 -2.57 16 3 C 0.05 0.87 4.81 -3.83 -0.02 0.85 16 4 N -0.51 -8.78 4.27 -236.07 -1.01 -9.79 16 5 C 0.03 0.41 5.28 -4.97 -0.03 0.38 16 6 C 0.51 6.69 7.36 -10.98 -0.08 6.61 16 7 O -0.49 -8.27 11.79 5.55 0.07 -8.20 16 8 N -0.68 -6.42 5.34 -9.85 -0.05 -6.48 16 9 C 0.16 1.64 6.30 -83.68 -0.53 1.11 16 10 C -0.14 -1.13 9.97 -39.40 -0.39 -1.53 16 11 C -0.09 -0.77 9.82 -39.57 -0.39 -1.16 16 12 C -0.06 -0.53 6.32 -39.47 -0.25 -0.78 16 13 Cl -0.08 -0.70 28.95 -51.86 -1.50 -2.20 16 14 C -0.09 -0.93 9.82 -39.58 -0.39 -1.32 16 15 C -0.11 -1.28 8.70 -39.40 -0.34 -1.62 16 16 C 0.03 0.50 4.39 -3.82 -0.02 0.49 16 17 C 0.24 5.97 2.80 -27.89 -0.08 5.89 16 18 H 0.05 1.50 6.76 -51.93 -0.35 1.14 16 19 O -0.55 -14.43 12.59 -35.23 -0.44 -14.87 16 20 C -0.58 -15.41 8.76 -34.44 -0.30 -15.71 16 21 H 0.05 1.37 7.74 -52.48 -0.41 0.96 16 22 C 0.08 2.22 5.40 -17.82 -0.10 2.13 16 23 N -0.86 -25.28 12.84 55.43 0.71 -24.57 16 24 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 31 H 0.05 0.66 6.18 -51.93 -0.32 0.34 16 32 H 0.07 1.15 6.44 -51.93 -0.33 0.82 16 33 H 0.08 1.70 6.71 -51.93 -0.35 1.35 16 34 H 0.08 1.44 5.81 -51.93 -0.30 1.14 16 35 H 0.06 0.69 6.08 -51.93 -0.32 0.37 16 36 H 0.10 1.12 7.87 -51.93 -0.41 0.71 16 37 H 0.41 2.40 8.82 -40.82 -0.36 2.04 16 38 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 39 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 40 H 0.14 1.25 8.06 -52.48 -0.42 0.82 16 41 H 0.15 2.06 6.24 -52.48 -0.33 1.73 16 42 H 0.04 0.68 5.85 -51.93 -0.30 0.38 16 43 H 0.06 1.12 7.83 -51.93 -0.41 0.72 16 44 H 0.34 7.96 9.04 45.56 0.41 8.38 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 379.79 15.07 5.72 5.72 Total: -1.00 -32.57 379.79 -9.65 -42.22 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -5.45 Total: 11.01 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -2.68 Total: -8.73 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: -0.35 Total: -40.83 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.38 Total: -23.08 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.57 -9.65 -42.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929978300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.067 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds