Wall clock time and date at job start Sat Apr 11 2020 05:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47533 * 2 1 4 4 N 1.46896 * 109.47370 * 185.22492 * 3 2 1 5 5 C 1.46900 * 110.99906 * 64.98362 * 4 3 2 6 6 C 1.50704 * 109.47021 * 66.04779 * 5 4 3 7 7 O 1.21289 * 119.99986 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00283 * 179.97438 * 6 5 4 9 9 C 1.39967 * 120.00216 * 175.26812 * 8 6 5 10 10 C 1.38866 * 120.06034 * 215.00691 * 9 8 6 11 11 C 1.38106 * 119.94427 * 179.79066 * 10 9 8 12 12 C 1.38390 * 120.05655 * 0.48798 * 11 10 9 13 13 Cl 1.73596 * 119.94232 * 179.72226 * 12 11 10 14 14 C 1.38383 * 120.11187 * 359.74193 * 12 11 10 15 15 C 1.38102 * 120.05840 * 0.02562 * 14 12 11 16 16 C 1.46903 * 110.99936 * 301.03467 * 4 3 2 17 17 C 1.53001 * 109.47044 * 288.84663 * 16 4 3 18 18 H 1.09005 * 109.46812 * 60.23497 * 17 16 4 19 19 O 1.42901 * 109.47218 * 300.23670 * 17 16 4 20 20 C 1.50691 * 109.47281 * 180.23124 * 17 16 4 21 21 H 1.08003 * 120.00246 * 0.02562 * 20 17 16 22 22 C 1.37881 * 120.00083 * 179.97438 * 20 17 16 23 23 N 1.31507 * 119.99950 * 0.02562 * 22 20 17 24 24 Si 1.86805 * 119.99839 * 180.02562 * 22 20 17 25 25 H 1.48507 * 109.46844 * 60.00419 * 24 22 20 26 26 H 1.48502 * 109.46949 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47223 * 300.00077 * 24 22 20 28 28 H 1.09003 * 109.47230 * 59.99523 * 1 2 3 29 29 H 1.08994 * 109.47544 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46997 * 300.00493 * 1 2 3 31 31 H 1.09001 * 109.46569 * 240.00048 * 2 1 3 32 32 H 1.09004 * 109.46808 * 120.00145 * 2 1 3 33 33 H 1.09000 * 109.46891 * 65.22343 * 3 2 1 34 34 H 1.08998 * 109.46942 * 305.22500 * 3 2 1 35 35 H 1.08995 * 109.47584 * 306.04835 * 5 4 3 36 36 H 1.09003 * 109.47401 * 186.04634 * 5 4 3 37 37 H 0.96998 * 119.99613 * 355.27492 * 8 6 5 38 38 H 1.08003 * 120.02598 * 359.97438 * 10 9 8 39 39 H 1.08005 * 119.97338 * 180.23412 * 11 10 9 40 40 H 1.08004 * 119.96507 * 179.97438 * 14 12 11 41 41 H 1.08004 * 120.02551 * 179.97438 * 15 14 12 42 42 H 1.08997 * 109.46995 * 48.84785 * 16 4 3 43 43 H 1.09000 * 109.46885 * 168.84755 * 16 4 3 44 44 H 0.96703 * 113.99759 * 300.00043 * 19 17 16 45 45 H 0.97001 * 119.99986 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5036 1.4443 -0.1261 5 6 3.9206 0.9031 -1.4265 6 6 3.4649 1.8284 -2.5253 7 8 2.8526 2.8391 -2.2519 8 7 3.7378 1.5330 -3.8116 9 6 3.2303 2.3386 -4.8376 10 6 2.8490 1.7690 -6.0453 11 6 2.3446 2.5655 -7.0544 12 6 2.2284 3.9317 -6.8665 13 17 1.6006 4.9311 -8.1396 14 6 2.6121 4.5024 -5.6657 15 6 3.1126 3.7097 -4.6517 16 6 4.1281 0.7026 0.9775 17 6 3.9856 1.5020 2.2742 18 1 2.9286 1.6522 2.4941 19 8 4.6259 2.7707 2.1245 20 6 4.6311 0.7438 3.4053 21 1 5.0969 -0.2125 3.2179 22 6 4.6281 1.2713 4.6792 23 7 4.0614 2.4359 4.9072 24 14 5.4289 0.3317 6.0811 25 1 6.8689 0.1271 5.7809 26 1 5.2905 1.1075 7.3397 27 1 4.7636 -0.9867 6.2371 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.7552 1.9286 0.9331 34 1 1.6024 1.9826 -0.8395 35 1 3.4735 -0.0804 -1.5711 36 1 5.0069 0.8157 -1.4524 37 1 4.2857 0.7620 -4.0264 38 1 2.9442 0.7035 -6.1942 39 1 2.0444 2.1225 -7.9925 40 1 2.5207 5.5689 -5.5217 41 1 3.4123 4.1557 -3.7148 42 1 3.6360 -0.2634 1.0902 43 1 5.1850 0.5488 0.7597 44 1 5.5708 2.7135 1.9270 45 1 4.0590 2.8068 5.8035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929978300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:37 Heat of formation + Delta-G solvation = -79.863424 kcal Electronic energy + Delta-G solvation = -27156.294757 eV Core-core repulsion = 23198.912336 eV Total energy + Delta-G solvation = -3957.382421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.69758 -40.04458 -38.88867 -37.45455 -36.84941 -35.64464 -34.19627 -33.70658 -32.07452 -31.29188 -30.16713 -28.29763 -27.17032 -25.00358 -24.10895 -23.44171 -23.11014 -21.51519 -20.74405 -19.08493 -18.81140 -18.04085 -17.64897 -17.09616 -16.74669 -16.63325 -16.37809 -16.02725 -15.63111 -15.31808 -15.16074 -15.08445 -14.83608 -14.47917 -14.42570 -14.31395 -14.20490 -13.33036 -13.21563 -13.13453 -12.86735 -12.77963 -12.74747 -12.62430 -12.58618 -12.49285 -12.41401 -12.16549 -12.03054 -11.82818 -11.38529 -11.18798 -11.00853 -10.70652 -10.64333 -10.06824 -10.01339 -9.11100 -8.94637 -8.09099 -6.35408 0.04331 0.29560 1.17173 1.42195 1.44074 1.52026 1.56452 1.91115 2.41063 2.65816 3.13019 3.17981 3.67858 3.87217 3.91689 3.96292 4.02440 4.25631 4.26569 4.32063 4.36775 4.40748 4.42576 4.49269 4.52670 4.64317 4.75745 4.85952 4.90454 4.99162 5.01841 5.08781 5.16317 5.24306 5.26597 5.27887 5.36728 5.43007 5.64082 5.79273 5.86337 6.03139 6.18089 6.23824 6.49180 6.79460 7.17752 7.39218 7.69619 8.95187 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022477 B = 0.002127 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.392188 B =13162.655604 C =13517.534594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.157 4.157 3 C 0.060 3.940 4 N -0.529 5.529 5 C 0.034 3.966 6 C 0.515 3.485 7 O -0.537 6.537 8 N -0.661 5.661 9 C 0.145 3.855 10 C -0.124 4.124 11 C -0.089 4.089 12 C -0.062 4.062 13 Cl -0.073 7.073 14 C -0.101 4.101 15 C -0.131 4.131 16 C 0.047 3.953 17 C 0.238 3.762 18 H 0.011 0.989 19 O -0.573 6.573 20 C -0.583 4.583 21 H 0.065 0.935 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.960 3.040 25 H -0.265 1.265 26 H -0.290 1.290 27 H -0.267 1.267 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.038 0.962 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.127 0.873 37 H 0.431 0.569 38 H 0.170 0.830 39 H 0.161 0.839 40 H 0.136 0.864 41 H 0.124 0.876 42 H 0.045 0.955 43 H 0.078 0.922 44 H 0.351 0.649 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.564 -6.766 -26.522 27.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.195 4.195 3 C -0.068 4.068 4 N -0.252 5.252 5 C -0.097 4.097 6 C 0.304 3.696 7 O -0.412 6.412 8 N -0.309 5.309 9 C 0.050 3.950 10 C -0.144 4.144 11 C -0.108 4.108 12 C -0.089 4.089 13 Cl -0.045 7.045 14 C -0.120 4.120 15 C -0.152 4.152 16 C -0.080 4.080 17 C 0.180 3.820 18 H 0.029 0.971 19 O -0.376 6.376 20 C -0.621 4.621 21 H 0.083 0.917 22 C -0.180 4.180 23 N -0.540 5.540 24 Si 0.785 3.215 25 H -0.189 1.189 26 H -0.216 1.216 27 H -0.192 1.192 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.144 0.856 37 H 0.270 0.730 38 H 0.187 0.813 39 H 0.179 0.821 40 H 0.154 0.846 41 H 0.141 0.859 42 H 0.063 0.937 43 H 0.096 0.904 44 H 0.195 0.805 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.534 -5.154 -26.081 26.706 hybrid contribution 0.639 -1.038 1.012 1.585 sum -1.895 -6.191 -25.068 25.891 Atomic orbital electron populations 1.21629 0.94626 1.02253 1.01472 1.22125 0.97534 0.97882 1.02004 1.22169 0.87349 0.95919 1.01412 1.61766 1.07938 1.54639 1.00840 1.22119 1.03738 0.96020 0.87780 1.21147 0.78307 0.86536 0.83633 1.90706 1.40131 1.27525 1.82882 1.43403 1.52578 1.31088 1.03879 1.18007 0.97662 0.89958 0.89371 1.21171 1.00029 1.01719 0.91474 1.21158 0.98347 0.90684 1.00650 1.21039 1.04490 0.92691 0.90670 1.98364 1.85737 1.69748 1.50614 1.21039 0.98503 1.00993 0.91466 1.21249 1.01446 0.93019 0.99452 1.22774 0.98831 0.95238 0.91174 1.19147 0.91969 0.81206 0.89701 0.97109 1.86546 1.24324 1.32773 1.94000 1.22036 1.39272 1.06338 0.94464 0.91689 1.25948 0.95143 0.95335 1.01608 1.70246 1.43559 1.18545 1.21602 0.85611 0.79418 0.78574 0.77925 1.18935 1.21560 1.19207 0.92460 0.91163 0.93873 0.90395 0.92633 0.94313 0.90428 0.88958 0.85564 0.72957 0.81301 0.82126 0.84577 0.85857 0.93700 0.90372 0.80517 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 9.91 71.98 0.71 -2.86 16 2 C -0.16 -4.41 5.24 30.59 0.16 -4.25 16 3 C 0.06 2.12 4.81 86.30 0.42 2.54 16 4 N -0.53 -18.31 4.27 -900.80 -3.85 -22.16 16 5 C 0.03 0.79 5.28 85.56 0.45 1.24 16 6 C 0.52 12.78 7.36 87.66 0.65 13.42 16 7 O -0.54 -18.63 11.79 -3.06 -0.04 -18.66 16 8 N -0.66 -10.86 5.34 -303.48 -1.62 -12.48 16 9 C 0.14 2.73 6.30 38.14 0.24 2.97 16 10 C -0.12 -1.59 9.97 22.39 0.22 -1.37 16 11 C -0.09 -1.22 9.82 22.27 0.22 -1.00 16 12 C -0.06 -1.11 6.32 22.34 0.14 -0.96 16 13 Cl -0.07 -1.24 28.95 -2.72 -0.08 -1.32 16 14 C -0.10 -2.12 9.82 22.27 0.22 -1.90 16 15 C -0.13 -3.13 8.70 22.39 0.19 -2.93 16 16 C 0.05 1.79 4.39 86.30 0.38 2.17 16 17 C 0.24 12.16 2.80 29.85 0.08 12.24 16 18 H 0.01 0.65 6.76 -2.38 -0.02 0.64 16 19 O -0.57 -31.13 12.59 -148.98 -1.88 -33.00 16 20 C -0.58 -31.38 8.76 25.60 0.22 -31.16 16 21 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 22 C 0.02 1.22 5.40 84.66 0.46 1.67 16 23 N -0.90 -55.09 12.84 21.45 0.28 -54.81 16 24 Si 0.96 43.05 29.54 68.60 2.03 45.08 16 25 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.08 1.77 6.18 -2.39 -0.01 1.76 16 32 H 0.05 1.75 6.44 -2.39 -0.02 1.74 16 33 H 0.04 1.70 6.71 -2.39 -0.02 1.68 16 34 H 0.08 2.83 5.81 -2.39 -0.01 2.82 16 35 H 0.09 1.63 6.08 -2.39 -0.01 1.62 16 36 H 0.13 2.33 7.87 -2.39 -0.02 2.31 16 37 H 0.43 3.38 8.82 -92.71 -0.82 2.56 16 38 H 0.17 0.97 8.06 -2.91 -0.02 0.94 16 39 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 40 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 41 H 0.12 3.64 6.24 -2.91 -0.02 3.62 16 42 H 0.04 1.62 5.85 -2.39 -0.01 1.61 16 43 H 0.08 2.69 7.83 -2.39 -0.02 2.68 16 44 H 0.35 16.81 9.04 -74.06 -0.67 16.14 16 45 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -74.79 379.79 -0.84 -75.63 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: -0.45 Total: 31.93 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 4.77 Total: -10.20 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -5.19 Total: -89.45 kcal Atomic # 8 Polarization: -49.76 SS G_CDS: -1.91 Total: -51.67 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.08 Total: -1.32 kcal Total: -74.79 -0.84 -75.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929978300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.231 kcal (2) G-P(sol) polarization free energy of solvation -74.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds