Wall clock time and date at job start Sat Apr 11 2020 05:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46899 * 2 1 4 4 C 1.52995 * 109.47465 * 119.99963 * 2 1 3 5 5 N 1.46498 * 109.47065 * 66.74709 * 4 2 1 6 6 C 1.46503 * 119.99938 * 277.34399 * 5 4 2 7 7 C 1.50701 * 109.46959 * 269.99672 * 6 5 4 8 8 H 1.07999 * 120.00031 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99811 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00423 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99998 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47159 * 359.97438 * 11 9 7 13 13 H 1.48492 * 109.47333 * 120.00019 * 11 9 7 14 14 H 1.48508 * 109.46639 * 240.00289 * 11 9 7 15 15 C 1.34776 * 120.00184 * 97.34517 * 5 4 2 16 16 O 1.21556 * 120.00159 * 186.37453 * 15 5 4 17 17 C 1.47834 * 119.99939 * 6.37239 * 15 5 4 18 18 C 1.40031 * 120.56042 * 315.78948 * 17 15 5 19 19 C 1.38355 * 118.29026 * 179.70690 * 18 17 15 20 20 C 1.38356 * 119.30273 * 0.27269 * 19 18 17 21 21 S 1.76198 * 119.45953 * 180.02562 * 20 19 18 22 22 C 1.81406 * 104.44903 * 89.99547 * 21 20 19 23 23 O 1.42091 * 104.27794 * 206.07148 * 21 20 19 24 24 O 1.42099 * 104.27550 * 333.93077 * 21 20 19 25 25 N 1.31918 * 121.07944 * 359.97438 * 20 19 18 26 26 C 1.31698 * 121.88098 * 0.02562 * 25 20 19 27 27 H 1.09003 * 109.47281 * 299.99484 * 1 2 3 28 28 H 1.08991 * 109.47260 * 59.99828 * 1 2 3 29 29 H 1.09005 * 109.47130 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47281 * 240.00516 * 2 1 3 31 31 H 1.08996 * 109.46707 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47130 * 300.00045 * 3 2 1 33 33 H 1.09003 * 109.46733 * 60.00180 * 3 2 1 34 34 H 1.09000 * 109.47452 * 306.75027 * 4 2 1 35 35 H 1.09000 * 109.47380 * 186.74857 * 4 2 1 36 36 H 1.09001 * 109.47184 * 29.99623 * 6 5 4 37 37 H 1.08997 * 109.47154 * 150.00243 * 6 5 4 38 38 H 0.97003 * 120.00409 * 179.97438 * 10 9 7 39 39 H 1.08001 * 120.85171 * 359.97421 * 18 17 15 40 40 H 1.08000 * 120.34812 * 180.25196 * 19 18 17 41 41 H 1.09000 * 109.46449 * 60.00203 * 22 21 20 42 42 H 1.09004 * 109.46967 * 179.97438 * 22 21 20 43 43 H 1.08995 * 109.47209 * 299.99823 * 22 21 20 44 44 H 1.08000 * 119.71459 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6888 -2.1413 1.1708 6 6 0.3520 -2.5883 1.5703 7 6 0.3542 -2.9290 3.0383 8 1 1.2605 -2.8227 3.6160 9 6 -0.8012 -3.3754 3.6441 10 7 -1.9049 -3.5043 2.9408 11 14 -0.7987 -3.7970 5.4639 12 1 0.5578 -3.5684 6.0232 13 1 -1.7786 -2.9356 6.1730 14 1 -1.1732 -5.2230 5.6421 15 6 2.5953 -3.0365 0.7312 16 8 2.2703 -4.1946 0.5559 17 6 3.9850 -2.6100 0.4623 18 6 4.2434 -1.4189 -0.2272 19 6 5.5617 -1.0617 -0.4479 20 6 6.5728 -1.8876 0.0102 21 16 8.2531 -1.4364 -0.2680 22 6 8.7039 -0.4506 1.1865 23 8 8.9526 -2.6732 -0.2685 24 8 8.2088 -0.6193 -1.4298 25 7 6.2993 -3.0069 0.6526 26 6 5.0612 -3.3897 0.8869 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.5815 -0.2819 2.1351 35 1 3.1233 -0.6178 1.3116 36 1 -0.3684 -1.7920 1.3832 37 1 0.0764 -3.4708 0.9930 38 1 -2.7177 -3.8187 3.3669 39 1 3.4344 -0.7929 -0.5739 40 1 5.7990 -0.1480 -0.9725 41 1 8.5886 -1.0561 2.0856 42 1 9.7406 -0.1257 1.0982 43 1 8.0535 0.4217 1.2500 44 1 4.8774 -4.3131 1.4160 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930902417.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:42 Heat of formation + Delta-G solvation = -54.672592 kcal Electronic energy + Delta-G solvation = -28067.619603 eV Core-core repulsion = 24113.373245 eV Total energy + Delta-G solvation = -3954.246358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.84547 -38.90499 -37.38238 -36.77675 -36.21456 -33.77638 -33.10110 -32.34804 -31.77911 -29.88985 -28.08916 -26.97848 -26.05583 -24.85193 -24.01910 -22.65787 -20.59819 -19.65769 -19.19736 -18.20672 -17.19103 -16.92533 -16.66106 -16.56082 -15.89090 -15.70365 -15.16469 -14.73084 -14.59417 -14.56079 -14.22353 -13.89258 -13.60356 -13.56645 -13.44658 -13.04017 -12.99045 -12.50870 -12.36034 -12.25036 -12.24705 -12.22113 -11.76305 -11.64635 -11.51307 -11.27545 -11.14041 -11.04776 -10.89131 -10.68273 -10.37790 -10.26702 -10.06765 -9.97415 -9.70994 -9.62388 -9.21355 -8.52421 -7.87257 -6.15921 -4.21071 -0.33756 0.21315 0.91794 2.43280 2.86743 3.22294 3.28772 3.31467 3.37017 3.55747 3.70045 3.71510 4.22481 4.34318 4.39651 4.49721 4.54931 4.66415 4.82800 4.88357 4.89140 4.97542 5.11969 5.19063 5.26477 5.32720 5.46953 5.51556 5.60445 5.69837 5.79533 5.94848 5.98711 6.01678 6.15761 6.21540 6.37148 6.55351 6.91255 7.25121 7.34338 7.36549 7.79186 8.09151 8.11389 8.63428 8.84746 9.44218 10.92030 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014489 B = 0.003259 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.095258 B = 8589.035124 C = 9589.182816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.147 4.147 4 C 0.100 3.900 5 N -0.580 5.580 6 C 0.234 3.766 7 C -0.532 4.532 8 H 0.058 0.942 9 C 0.064 3.936 10 N -0.892 5.892 11 Si 0.898 3.102 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.544 3.456 16 O -0.522 6.522 17 C -0.108 4.108 18 C -0.080 4.080 19 C -0.095 4.095 20 C -0.429 4.429 21 S 2.511 3.489 22 C -0.646 4.646 23 O -0.915 6.915 24 O -0.932 6.932 25 N -0.394 5.394 26 C 0.128 3.872 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.046 0.954 38 H 0.264 0.736 39 H 0.164 0.836 40 H 0.158 0.842 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.132 0.868 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.870 13.017 -4.895 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.139 4.139 3 C -0.205 4.205 4 C -0.024 4.024 5 N -0.309 5.309 6 C 0.116 3.884 7 C -0.571 4.571 8 H 0.076 0.924 9 C -0.139 4.139 10 N -0.530 5.530 11 Si 0.725 3.275 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.208 1.208 15 C 0.328 3.672 16 O -0.399 6.399 17 C -0.113 4.113 18 C -0.107 4.107 19 C -0.116 4.116 20 C -0.648 4.648 21 S 2.686 3.314 22 C -0.796 4.796 23 O -0.912 6.912 24 O -0.929 6.929 25 N -0.103 5.103 26 C -0.033 4.033 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.181 0.819 40 H 0.176 0.824 41 H 0.155 0.845 42 H 0.153 0.847 43 H 0.151 0.849 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 16.629 11.602 -5.377 20.977 hybrid contribution -1.552 0.462 1.435 2.164 sum 15.077 12.063 -3.942 19.707 Atomic orbital electron populations 1.22068 0.93876 1.03854 1.01330 1.21707 0.97932 0.95975 0.98298 1.21842 1.00506 0.95769 1.02410 1.21882 0.99870 0.82057 0.98557 1.48185 1.15507 1.05711 1.61545 1.19684 0.76068 0.96986 0.95638 1.21441 0.96322 1.45190 0.94115 0.92400 1.24910 0.95308 0.95171 0.98496 1.69925 1.00705 1.46301 1.36096 0.86448 0.78023 0.78276 0.84716 1.19808 1.20900 1.20775 1.17961 0.83830 0.86137 0.79228 1.90814 1.79414 1.17787 1.51918 1.21729 0.97083 0.95304 0.97208 1.22559 0.98063 0.95108 0.94953 1.21925 0.92895 1.00071 0.96740 1.33280 1.23826 0.99799 1.07893 1.05309 0.73542 0.75748 0.76780 1.30176 1.12424 1.15857 1.21191 1.93606 1.70514 1.40809 1.86300 1.93612 1.85518 1.70448 1.43313 1.67831 1.22584 1.11311 1.08608 1.23226 0.86161 0.98814 0.95140 0.92228 0.93335 0.90386 0.91194 0.92863 0.92302 0.92087 0.89489 0.91064 0.92909 0.93597 0.92624 0.81903 0.82421 0.84527 0.84666 0.84894 0.80583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.19 37.16 0.30 -1.83 16 2 C -0.12 -1.45 2.14 -90.62 -0.19 -1.64 16 3 C -0.15 -1.32 9.10 37.16 0.34 -0.98 16 4 C 0.10 1.46 4.43 -4.05 -0.02 1.44 16 5 N -0.58 -11.25 2.42 -176.18 -0.43 -11.68 16 6 C 0.23 5.64 4.43 -5.19 -0.02 5.62 16 7 C -0.53 -14.21 9.39 -34.44 -0.32 -14.54 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.89 -25.27 13.29 55.43 0.74 -24.54 16 11 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 C 0.54 10.82 7.31 -12.33 -0.09 10.73 16 16 O -0.52 -12.61 16.54 5.32 0.09 -12.52 16 17 C -0.11 -1.69 5.15 -104.82 -0.54 -2.23 16 18 C -0.08 -0.99 7.52 -38.87 -0.29 -1.28 16 19 C -0.10 -1.00 9.49 -39.49 -0.37 -1.38 16 20 C -0.43 -5.00 6.53 -17.47 -0.11 -5.11 16 21 S 2.51 22.68 5.86 -107.50 -0.63 22.05 16 22 C -0.65 -2.87 10.80 101.05 1.09 -1.78 16 23 O -0.92 -11.97 17.72 -57.54 -1.02 -12.99 16 24 O -0.93 -10.12 17.09 -57.54 -0.98 -11.10 16 25 N -0.39 -5.60 10.02 -12.11 -0.12 -5.72 16 26 C 0.13 1.96 10.85 -17.13 -0.19 1.77 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 1.33 5.28 -51.93 -0.27 1.05 16 30 H 0.07 0.84 6.35 -51.93 -0.33 0.51 16 31 H 0.05 0.39 7.99 -51.93 -0.41 -0.03 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 1.33 8.12 -51.93 -0.42 0.91 16 35 H 0.07 0.89 4.99 -51.93 -0.26 0.63 16 36 H 0.05 1.25 5.08 -51.93 -0.26 0.98 16 37 H 0.05 1.27 7.34 -51.93 -0.38 0.89 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.16 1.75 3.43 -52.49 -0.18 1.57 16 40 H 0.16 1.13 7.55 -52.49 -0.40 0.74 16 41 H 0.14 0.56 8.14 -51.92 -0.42 0.14 16 42 H 0.13 0.34 8.14 -51.92 -0.42 -0.09 16 43 H 0.13 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.18 2.61 8.06 -52.49 -0.42 2.19 16 LS Contribution 371.87 15.07 5.60 5.60 Total: -1.00 -36.52 371.87 -8.14 -44.65 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -5.85 Total: -0.20 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -0.52 Total: -9.57 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.19 Total: -41.93 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -1.92 Total: -36.61 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 22.68 SS G_CDS: -0.63 Total: 22.05 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.52 -8.14 -44.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930902417.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.019 kcal (2) G-P(sol) polarization free energy of solvation -36.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds