Wall clock time and date at job start Sat Apr 11 2020 05:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46899 * 2 1 4 4 C 1.52995 * 109.47465 * 119.99963 * 2 1 3 5 5 N 1.46498 * 109.47065 * 66.74709 * 4 2 1 6 6 C 1.46503 * 119.99938 * 277.34399 * 5 4 2 7 7 C 1.50701 * 109.46959 * 269.99672 * 6 5 4 8 8 H 1.07999 * 120.00031 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99811 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00423 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99998 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47159 * 359.97438 * 11 9 7 13 13 H 1.48492 * 109.47333 * 120.00019 * 11 9 7 14 14 H 1.48508 * 109.46639 * 240.00289 * 11 9 7 15 15 C 1.34776 * 120.00184 * 97.34517 * 5 4 2 16 16 O 1.21556 * 120.00159 * 186.37453 * 15 5 4 17 17 C 1.47834 * 119.99939 * 6.37239 * 15 5 4 18 18 C 1.40031 * 120.56042 * 315.78948 * 17 15 5 19 19 C 1.38355 * 118.29026 * 179.70690 * 18 17 15 20 20 C 1.38356 * 119.30273 * 0.27269 * 19 18 17 21 21 S 1.76198 * 119.45953 * 180.02562 * 20 19 18 22 22 C 1.81406 * 104.44903 * 89.99547 * 21 20 19 23 23 O 1.42091 * 104.27794 * 206.07148 * 21 20 19 24 24 O 1.42099 * 104.27550 * 333.93077 * 21 20 19 25 25 N 1.31918 * 121.07944 * 359.97438 * 20 19 18 26 26 C 1.31698 * 121.88098 * 0.02562 * 25 20 19 27 27 H 1.09003 * 109.47281 * 299.99484 * 1 2 3 28 28 H 1.08991 * 109.47260 * 59.99828 * 1 2 3 29 29 H 1.09005 * 109.47130 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47281 * 240.00516 * 2 1 3 31 31 H 1.08996 * 109.46707 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47130 * 300.00045 * 3 2 1 33 33 H 1.09003 * 109.46733 * 60.00180 * 3 2 1 34 34 H 1.09000 * 109.47452 * 306.75027 * 4 2 1 35 35 H 1.09000 * 109.47380 * 186.74857 * 4 2 1 36 36 H 1.09001 * 109.47184 * 29.99623 * 6 5 4 37 37 H 1.08997 * 109.47154 * 150.00243 * 6 5 4 38 38 H 0.97003 * 120.00409 * 179.97438 * 10 9 7 39 39 H 1.08001 * 120.85171 * 359.97421 * 18 17 15 40 40 H 1.08000 * 120.34812 * 180.25196 * 19 18 17 41 41 H 1.09000 * 109.46449 * 60.00203 * 22 21 20 42 42 H 1.09004 * 109.46967 * 179.97438 * 22 21 20 43 43 H 1.08995 * 109.47209 * 299.99823 * 22 21 20 44 44 H 1.08000 * 119.71459 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6888 -2.1413 1.1708 6 6 0.3520 -2.5883 1.5703 7 6 0.3542 -2.9290 3.0383 8 1 1.2605 -2.8227 3.6160 9 6 -0.8012 -3.3754 3.6441 10 7 -1.9049 -3.5043 2.9408 11 14 -0.7987 -3.7970 5.4639 12 1 0.5578 -3.5684 6.0232 13 1 -1.7786 -2.9356 6.1730 14 1 -1.1732 -5.2230 5.6421 15 6 2.5953 -3.0365 0.7312 16 8 2.2703 -4.1946 0.5559 17 6 3.9850 -2.6100 0.4623 18 6 4.2434 -1.4189 -0.2272 19 6 5.5617 -1.0617 -0.4479 20 6 6.5728 -1.8876 0.0102 21 16 8.2531 -1.4364 -0.2680 22 6 8.7039 -0.4506 1.1865 23 8 8.9526 -2.6732 -0.2685 24 8 8.2088 -0.6193 -1.4298 25 7 6.2993 -3.0069 0.6526 26 6 5.0612 -3.3897 0.8869 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.5815 -0.2819 2.1351 35 1 3.1233 -0.6178 1.3116 36 1 -0.3684 -1.7920 1.3832 37 1 0.0764 -3.4708 0.9930 38 1 -2.7177 -3.8187 3.3669 39 1 3.4344 -0.7929 -0.5739 40 1 5.7990 -0.1480 -0.9725 41 1 8.5886 -1.0561 2.0856 42 1 9.7406 -0.1257 1.0982 43 1 8.0535 0.4217 1.2500 44 1 4.8774 -4.3131 1.4160 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930902417.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:41 Heat of formation + Delta-G solvation = -82.694198 kcal Electronic energy + Delta-G solvation = -28068.834711 eV Core-core repulsion = 24113.373245 eV Total energy + Delta-G solvation = -3955.461466 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.05423 -40.25985 -38.19151 -38.12223 -37.01677 -35.48032 -34.38961 -33.86428 -32.88755 -30.29764 -29.82113 -28.02762 -27.28098 -26.29265 -25.09652 -24.28917 -21.72788 -20.70996 -20.32978 -19.03835 -18.73882 -18.42330 -18.10171 -17.38763 -17.18092 -16.54490 -16.44471 -16.29879 -15.99325 -15.67568 -15.27570 -15.14561 -14.73126 -14.35513 -14.23575 -14.01505 -13.91022 -13.88042 -13.60757 -13.53074 -13.16465 -13.06793 -13.05376 -12.97933 -12.74817 -12.70526 -12.51601 -12.21547 -12.12038 -11.92353 -11.84211 -11.72441 -11.55510 -11.26740 -11.02902 -10.71824 -10.62214 -10.61146 -9.54055 -8.25246 -6.39193 -1.03815 -0.79025 -0.09806 1.34502 1.37138 1.46390 1.50978 1.73289 2.00501 2.30991 2.37166 2.83928 2.96878 3.05120 3.25970 3.50329 3.58416 3.78644 3.80723 3.82844 3.95848 4.12569 4.15290 4.31821 4.34361 4.49429 4.52798 4.59933 4.75561 4.79569 4.88964 4.95821 5.00923 5.05443 5.11547 5.15497 5.21301 5.28603 5.40433 5.50542 5.54113 5.76777 6.03150 6.31156 6.52573 6.68999 7.09690 7.32326 8.81907 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014489 B = 0.003259 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.095258 B = 8589.035124 C = 9589.182816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.142 4.142 4 C 0.095 3.905 5 N -0.581 5.581 6 C 0.251 3.749 7 C -0.547 4.547 8 H 0.052 0.948 9 C 0.013 3.987 10 N -0.924 5.924 11 Si 0.964 3.036 12 H -0.268 1.268 13 H -0.269 1.269 14 H -0.283 1.283 15 C 0.539 3.461 16 O -0.583 6.583 17 C -0.130 4.130 18 C -0.069 4.069 19 C -0.083 4.083 20 C -0.429 4.429 21 S 2.515 3.485 22 C -0.615 4.615 23 O -0.964 6.964 24 O -0.950 6.950 25 N -0.410 5.410 26 C 0.115 3.885 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.035 0.965 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.056 0.944 37 H -0.004 1.004 38 H 0.267 0.733 39 H 0.182 0.818 40 H 0.204 0.796 41 H 0.146 0.854 42 H 0.165 0.835 43 H 0.165 0.835 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.517 16.957 -4.374 25.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.133 4.133 3 C -0.199 4.199 4 C -0.027 4.027 5 N -0.309 5.309 6 C 0.130 3.870 7 C -0.585 4.585 8 H 0.071 0.929 9 C -0.187 4.187 10 N -0.564 5.564 11 Si 0.788 3.212 12 H -0.192 1.192 13 H -0.194 1.194 14 H -0.209 1.209 15 C 0.326 3.674 16 O -0.464 6.464 17 C -0.135 4.135 18 C -0.095 4.095 19 C -0.103 4.103 20 C -0.646 4.646 21 S 2.692 3.308 22 C -0.770 4.770 23 O -0.961 6.961 24 O -0.947 6.947 25 N -0.119 5.119 26 C -0.046 4.046 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.074 0.926 37 H 0.014 0.986 38 H 0.076 0.924 39 H 0.199 0.801 40 H 0.221 0.779 41 H 0.164 0.836 42 H 0.183 0.817 43 H 0.183 0.817 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 19.251 15.556 -4.887 25.228 hybrid contribution -2.254 -0.668 1.232 2.654 sum 16.997 14.888 -3.655 22.889 Atomic orbital electron populations 1.22017 0.95611 1.01260 1.02174 1.21682 0.96419 0.98320 0.96887 1.21825 1.02201 0.92614 1.03269 1.22233 1.01678 0.79048 0.99773 1.48134 1.13861 1.08018 1.60909 1.19176 0.78842 0.95197 0.93745 1.21737 0.96181 1.45290 0.95321 0.92947 1.25769 0.94938 0.94948 1.03028 1.70039 1.01326 1.47055 1.37973 0.85427 0.78452 0.77887 0.79408 1.19185 1.19364 1.20948 1.18605 0.85465 0.85300 0.77988 1.90762 1.80793 1.20323 1.54527 1.21277 0.94035 0.97683 1.00507 1.22755 0.99697 0.93581 0.93504 1.22407 0.91321 1.01095 0.95438 1.34034 1.25943 0.98712 1.05901 1.05311 0.71914 0.75297 0.78263 1.29985 1.14788 1.15432 1.16836 1.93554 1.70663 1.44153 1.87748 1.93583 1.85055 1.70051 1.46022 1.67863 1.21533 1.12760 1.09738 1.23091 0.86810 0.98768 0.95896 0.92707 0.91158 0.94569 0.90753 0.90150 0.90844 0.91926 0.90300 0.88209 0.92603 0.98594 0.92371 0.80148 0.77950 0.83585 0.81703 0.81673 0.81868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.24 8.19 71.98 0.59 -3.65 16 2 C -0.11 -2.55 2.14 -10.79 -0.02 -2.58 16 3 C -0.14 -1.93 9.10 71.98 0.66 -1.27 16 4 C 0.09 2.69 4.43 86.38 0.38 3.07 16 5 N -0.58 -23.62 2.42 -829.59 -2.00 -25.62 16 6 C 0.25 12.92 4.43 85.63 0.38 13.30 16 7 C -0.55 -30.55 9.39 25.60 0.24 -30.31 16 8 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 9 C 0.01 0.71 5.46 84.66 0.46 1.17 16 10 N -0.92 -54.43 13.29 21.45 0.28 -54.15 16 11 Si 0.96 43.93 29.54 68.60 2.03 45.95 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 13 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 15 C 0.54 22.76 7.31 86.78 0.63 23.39 16 16 O -0.58 -30.66 16.54 -3.89 -0.06 -30.72 16 17 C -0.13 -4.13 5.15 -19.99 -0.10 -4.23 16 18 C -0.07 -1.53 7.52 22.73 0.17 -1.36 16 19 C -0.08 -1.41 9.49 22.33 0.21 -1.20 16 20 C -0.43 -8.93 6.53 84.71 0.55 -8.38 16 21 S 2.51 37.87 5.86 -56.49 -0.33 37.54 16 22 C -0.62 -2.04 10.80 113.37 1.22 -0.81 16 23 O -0.96 -24.15 17.72 -127.65 -2.26 -26.41 16 24 O -0.95 -17.34 17.09 -127.65 -2.18 -19.52 16 25 N -0.41 -11.42 10.02 -192.23 -1.93 -13.35 16 26 C 0.12 3.64 10.85 85.02 0.92 4.57 16 27 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.04 1.30 5.28 -2.38 -0.01 1.28 16 30 H 0.07 1.63 6.35 -2.39 -0.02 1.61 16 31 H 0.08 0.70 7.99 -2.39 -0.02 0.68 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 2.38 8.12 -2.39 -0.02 2.36 16 35 H 0.10 2.25 4.99 -2.39 -0.01 2.24 16 36 H 0.06 2.83 5.08 -2.39 -0.01 2.82 16 37 H 0.00 -0.25 7.34 -2.39 -0.02 -0.27 16 38 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 39 H 0.18 3.29 3.43 -2.91 -0.01 3.28 16 40 H 0.20 1.66 7.55 -2.91 -0.02 1.64 16 41 H 0.15 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.17 -0.21 8.14 -2.39 -0.02 -0.23 16 43 H 0.17 -0.35 8.14 -2.39 -0.02 -0.37 16 44 H 0.16 5.34 8.06 -2.91 -0.02 5.32 16 Total: -1.00 -87.21 371.87 0.87 -86.34 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.03 Total: 8.24 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 6.30 Total: -8.29 kcal Atomic # 7 Polarization: -89.47 SS G_CDS: -3.65 Total: -93.12 kcal Atomic # 8 Polarization: -72.15 SS G_CDS: -4.51 Total: -76.66 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: 37.87 SS G_CDS: -0.33 Total: 37.54 kcal Total: -87.21 0.87 -86.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930902417.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.646 kcal (2) G-P(sol) polarization free energy of solvation -87.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds