Wall clock time and date at job start Sat Apr 11 2020 05:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34227 * 117.00710 * 2 1 4 4 O 1.20825 * 119.99550 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00456 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47071 * 179.97438 * 5 3 2 7 7 C 1.36890 * 120.00055 * 269.06303 * 6 5 3 8 8 H 1.08000 * 120.00400 * 130.17410 * 7 6 5 9 9 C 1.39010 * 119.99936 * 310.17055 * 7 6 5 10 10 N 1.31397 * 119.99984 * 350.27473 * 9 7 6 11 11 Si 1.86797 * 119.99957 * 170.27045 * 9 7 6 12 12 H 1.48497 * 109.47392 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.46940 * 120.00428 * 11 9 7 14 14 H 1.48506 * 109.47192 * 240.00045 * 11 9 7 15 15 C 1.34786 * 120.00038 * 89.06359 * 6 5 3 16 16 O 1.21721 * 119.99972 * 2.69033 * 15 6 5 17 17 C 1.46561 * 119.99680 * 182.69213 * 15 6 5 18 18 C 1.36773 * 126.17471 * 174.42705 * 17 15 6 19 19 N 1.30945 * 113.92027 * 179.75311 * 18 17 15 20 20 C 1.29378 * 117.46409 * 0.51258 * 19 18 17 21 21 C 1.50704 * 124.69876 * 179.76474 * 20 19 18 22 22 C 1.53005 * 109.46894 * 89.70462 * 21 20 19 23 23 C 1.52995 * 109.47277 * 59.99508 * 22 21 20 24 24 C 1.52996 * 109.46812 * 299.99871 * 22 21 20 25 25 C 1.52994 * 109.46980 * 179.97438 * 22 21 20 26 26 S 1.70913 * 110.59537 * 359.50487 * 20 19 18 27 27 H 1.09007 * 109.47249 * 300.00515 * 1 2 3 28 28 H 1.09002 * 109.46998 * 59.99655 * 1 2 3 29 29 H 1.08998 * 109.47307 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47099 * 59.99171 * 5 3 2 31 31 H 1.09004 * 109.46458 * 299.99144 * 5 3 2 32 32 H 0.96996 * 120.00603 * 179.97438 * 10 9 7 33 33 H 1.08005 * 123.04429 * 0.05449 * 18 17 15 34 34 H 1.08996 * 109.47200 * 329.70423 * 21 20 19 35 35 H 1.08994 * 109.46591 * 209.69829 * 21 20 19 36 36 H 1.09003 * 109.47554 * 300.00167 * 23 22 21 37 37 H 1.09009 * 109.46977 * 60.00095 * 23 22 21 38 38 H 1.08998 * 109.47656 * 180.02562 * 23 22 21 39 39 H 1.09002 * 109.47337 * 180.02562 * 24 22 21 40 40 H 1.09004 * 109.47126 * 299.99838 * 24 22 21 41 41 H 1.09000 * 109.48046 * 59.99960 * 24 22 21 42 42 H 1.09002 * 109.47244 * 299.99440 * 25 22 21 43 43 H 1.09004 * 109.47363 * 59.99915 * 25 22 21 44 44 H 1.08997 * 109.47229 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9818 2.6795 -0.0011 7 6 4.1940 3.3301 -1.1867 8 1 3.7361 4.2920 -1.3644 9 6 4.9991 2.7528 -2.1618 10 7 5.7076 1.6827 -1.8800 11 14 5.0735 3.4982 -3.8730 12 1 4.1897 4.6901 -3.9327 13 1 6.4699 3.9023 -4.1766 14 1 4.6206 2.4951 -4.8701 15 6 4.1551 3.3315 1.1658 16 8 4.0141 2.7400 2.2202 17 6 4.5131 4.7527 1.1650 18 6 4.6145 5.5604 2.2641 19 7 4.9563 6.7937 1.9870 20 6 5.1419 7.0962 0.7429 21 6 5.5321 8.4627 0.2413 22 6 7.0575 8.5746 0.2006 23 6 7.6224 7.5063 -0.7378 24 6 7.6218 8.3674 1.6075 25 6 7.4537 9.9616 -0.3093 26 16 4.8902 5.7297 -0.2522 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.9557 0.7806 -0.8907 31 1 3.9563 0.7805 0.8893 32 1 6.2691 1.2796 -2.5605 33 1 4.4341 5.2113 3.2701 34 1 5.1297 9.2237 0.9098 35 1 5.1302 8.6102 -0.7610 36 1 7.3401 6.5179 -0.3750 37 1 7.2203 7.6539 -1.7402 38 1 8.7091 7.5856 -0.7665 39 1 8.7084 8.4476 1.5787 40 1 7.2193 9.1285 2.2761 41 1 7.3395 7.3791 1.9705 42 1 7.0518 10.1088 -1.3117 43 1 7.0513 10.7230 0.3590 44 1 8.5404 10.0412 -0.3387 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933219943.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:45 Heat of formation + Delta-G solvation = -87.950318 kcal Electronic energy + Delta-G solvation = -28236.524578 eV Core-core repulsion = 24280.835190 eV Total energy + Delta-G solvation = -3955.689389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.92290 -39.24335 -38.39607 -37.02648 -35.82987 -34.93281 -31.97151 -30.67990 -29.01139 -27.56759 -27.20804 -27.08004 -26.41949 -25.09486 -23.47379 -21.37926 -20.04549 -19.31571 -18.76018 -17.50300 -17.11175 -16.96027 -16.05645 -15.77516 -15.49533 -15.13235 -14.94401 -14.69675 -14.35910 -14.09158 -13.91382 -13.64691 -13.06030 -13.03786 -12.89496 -12.68862 -12.47690 -12.29182 -11.95174 -11.85348 -11.60986 -11.58625 -11.57405 -11.45520 -11.31387 -11.04135 -10.77778 -10.63321 -10.57377 -10.56557 -10.49829 -10.32202 -9.86772 -9.65494 -8.97812 -8.68575 -8.47877 -8.08709 -7.69383 -6.79168 -4.64945 1.11874 2.17576 2.65292 2.92206 2.95603 3.01663 3.06185 3.11933 3.38131 3.80544 4.21298 4.46983 4.64670 4.69158 4.88383 4.91363 5.13615 5.38900 5.45479 5.53266 5.53598 5.60519 5.65641 5.77045 5.82602 5.89736 5.91214 5.93094 5.96660 5.97971 6.12619 6.16779 6.20433 6.28341 6.32473 6.49249 6.53347 6.55640 6.89877 6.91975 7.01724 7.52841 7.89289 8.43810 8.45963 8.62569 9.03522 9.49582 10.22454 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013925 B = 0.004223 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.224146 B = 6628.485640 C = 7876.283674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.367 6.367 3 C 0.445 3.555 4 O -0.503 6.503 5 C 0.132 3.868 6 N -0.422 5.422 7 C -0.341 4.341 8 H 0.099 0.901 9 C 0.063 3.937 10 N -0.842 5.842 11 Si 0.908 3.092 12 H -0.256 1.256 13 H -0.269 1.269 14 H -0.272 1.272 15 C 0.565 3.435 16 O -0.584 6.584 17 C -0.253 4.253 18 C 0.076 3.924 19 N -0.485 5.485 20 C -0.041 4.041 21 C -0.029 4.029 22 C -0.063 4.063 23 C -0.153 4.153 24 C -0.137 4.137 25 C -0.138 4.138 26 S 0.268 5.732 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.138 0.862 31 H 0.106 0.894 32 H 0.280 0.720 33 H 0.172 0.828 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.047 0.953 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.738 6.212 -2.407 6.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.284 6.284 3 C 0.286 3.714 4 O -0.389 6.389 5 C 0.006 3.994 6 N -0.141 5.141 7 C -0.474 4.474 8 H 0.116 0.884 9 C -0.149 4.149 10 N -0.475 5.475 11 Si 0.731 3.269 12 H -0.180 1.180 13 H -0.194 1.194 14 H -0.197 1.197 15 C 0.355 3.645 16 O -0.470 6.470 17 C -0.378 4.378 18 C -0.083 4.083 19 N -0.200 5.200 20 C -0.313 4.313 21 C -0.069 4.069 22 C -0.065 4.065 23 C -0.210 4.210 24 C -0.194 4.194 25 C -0.195 4.195 26 S 0.532 5.468 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.155 0.845 31 H 0.123 0.877 32 H 0.091 0.909 33 H 0.189 0.811 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.731 6.414 -2.692 6.994 hybrid contribution -0.431 -0.132 0.055 0.454 sum 0.301 6.282 -2.637 6.820 Atomic orbital electron populations 1.23105 0.77936 1.02705 1.02045 1.86540 1.22325 1.34678 1.84886 1.25258 0.93529 0.80946 0.71642 1.90592 1.67012 1.36405 1.44923 1.20933 0.84269 0.87267 1.06882 1.42704 1.57616 1.08838 1.04894 1.19353 1.30216 1.04525 0.93324 0.88417 1.25649 0.92782 0.95866 1.00599 1.69792 1.22901 1.19696 1.35076 0.86116 0.79332 0.80233 0.81177 1.17985 1.19412 1.19668 1.17155 0.78785 0.84518 0.84056 1.90681 1.56837 1.67914 1.31538 1.25863 1.14995 1.00013 0.96931 1.22138 0.99616 0.87193 0.99386 1.66138 1.15707 1.18655 1.19505 1.28135 1.03701 1.04082 0.95383 1.20234 0.95252 0.90616 1.00816 1.20491 0.93842 0.95673 0.96450 1.22066 1.00675 0.99263 0.99031 1.21833 0.99505 1.02845 0.95221 1.21844 1.01222 0.95627 1.00830 1.85026 1.57384 0.96489 1.07907 0.92482 0.92425 0.88821 0.84494 0.87654 0.90902 0.81119 0.89960 0.90377 0.91781 0.92420 0.92591 0.93364 0.92756 0.91872 0.92620 0.92666 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.59 16 2 O -0.37 -6.82 10.56 -39.25 -0.41 -7.23 16 3 C 0.44 9.75 8.02 36.01 0.29 10.04 16 4 O -0.50 -12.29 16.18 -18.75 -0.30 -12.59 16 5 C 0.13 2.99 5.57 -5.19 -0.03 2.96 16 6 N -0.42 -10.36 1.91 -117.62 -0.23 -10.58 16 7 C -0.34 -8.09 6.83 -15.01 -0.10 -8.19 16 8 H 0.10 2.31 5.43 -33.50 -0.18 2.13 16 9 C 0.06 1.42 5.13 -17.45 -0.09 1.33 16 10 N -0.84 -19.75 11.70 55.50 0.65 -19.10 16 11 Si 0.91 17.52 29.56 -169.99 -5.03 12.49 16 12 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 13 H -0.27 -5.09 7.11 56.52 0.40 -4.68 16 14 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 15 C 0.57 14.25 7.60 -12.90 -0.10 14.15 16 16 O -0.58 -15.63 16.46 5.17 0.09 -15.55 16 17 C -0.25 -5.71 6.35 -36.76 -0.23 -5.94 16 18 C 0.08 1.58 11.17 -18.46 -0.21 1.37 16 19 N -0.49 -9.34 9.63 -11.25 -0.11 -9.45 16 20 C -0.04 -0.72 4.93 -13.31 -0.07 -0.79 16 21 C -0.03 -0.39 4.86 -27.88 -0.14 -0.53 16 22 C -0.06 -0.78 0.80 -154.51 -0.12 -0.90 16 23 C -0.15 -2.01 8.01 37.15 0.30 -1.71 16 24 C -0.14 -1.81 8.17 37.16 0.30 -1.51 16 25 C -0.14 -1.36 8.47 37.15 0.31 -1.04 16 26 S 0.27 5.20 16.91 -107.50 -1.82 3.38 16 27 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 28 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.14 3.08 6.06 -51.93 -0.31 2.77 16 31 H 0.11 2.34 7.41 -51.93 -0.38 1.96 16 32 H 0.28 6.11 8.31 -40.82 -0.34 5.77 16 33 H 0.17 3.39 8.06 -52.48 -0.42 2.97 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.99 6.03 -51.93 -0.31 0.68 16 37 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 1.01 6.62 -51.93 -0.34 0.66 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 376.31 15.07 5.67 5.67 Total: -1.00 -28.93 376.31 -6.47 -35.40 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -6.17 Total: 6.73 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 1.19 Total: 10.82 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.32 Total: -39.13 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -0.63 Total: -35.37 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Atomic # 16 Polarization: 5.20 SS G_CDS: -1.82 Total: 3.38 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.93 -6.47 -35.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933219943.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.548 kcal (2) G-P(sol) polarization free energy of solvation -28.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds