Wall clock time and date at job start Sat Apr 11 2020 05:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34227 * 117.00710 * 2 1 4 4 O 1.20825 * 119.99550 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00456 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47071 * 179.97438 * 5 3 2 7 7 C 1.36890 * 120.00055 * 269.06303 * 6 5 3 8 8 H 1.08000 * 120.00400 * 130.17410 * 7 6 5 9 9 C 1.39010 * 119.99936 * 310.17055 * 7 6 5 10 10 N 1.31397 * 119.99984 * 350.27473 * 9 7 6 11 11 Si 1.86797 * 119.99957 * 170.27045 * 9 7 6 12 12 H 1.48497 * 109.47392 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.46940 * 120.00428 * 11 9 7 14 14 H 1.48506 * 109.47192 * 240.00045 * 11 9 7 15 15 C 1.34786 * 120.00038 * 89.06359 * 6 5 3 16 16 O 1.21721 * 119.99972 * 2.69033 * 15 6 5 17 17 C 1.46561 * 119.99680 * 182.69213 * 15 6 5 18 18 C 1.36773 * 126.17471 * 174.42705 * 17 15 6 19 19 N 1.30945 * 113.92027 * 179.75311 * 18 17 15 20 20 C 1.29378 * 117.46409 * 0.51258 * 19 18 17 21 21 C 1.50704 * 124.69876 * 179.76474 * 20 19 18 22 22 C 1.53005 * 109.46894 * 89.70462 * 21 20 19 23 23 C 1.52995 * 109.47277 * 59.99508 * 22 21 20 24 24 C 1.52996 * 109.46812 * 299.99871 * 22 21 20 25 25 C 1.52994 * 109.46980 * 179.97438 * 22 21 20 26 26 S 1.70913 * 110.59537 * 359.50487 * 20 19 18 27 27 H 1.09007 * 109.47249 * 300.00515 * 1 2 3 28 28 H 1.09002 * 109.46998 * 59.99655 * 1 2 3 29 29 H 1.08998 * 109.47307 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47099 * 59.99171 * 5 3 2 31 31 H 1.09004 * 109.46458 * 299.99144 * 5 3 2 32 32 H 0.96996 * 120.00603 * 179.97438 * 10 9 7 33 33 H 1.08005 * 123.04429 * 0.05449 * 18 17 15 34 34 H 1.08996 * 109.47200 * 329.70423 * 21 20 19 35 35 H 1.08994 * 109.46591 * 209.69829 * 21 20 19 36 36 H 1.09003 * 109.47554 * 300.00167 * 23 22 21 37 37 H 1.09009 * 109.46977 * 60.00095 * 23 22 21 38 38 H 1.08998 * 109.47656 * 180.02562 * 23 22 21 39 39 H 1.09002 * 109.47337 * 180.02562 * 24 22 21 40 40 H 1.09004 * 109.47126 * 299.99838 * 24 22 21 41 41 H 1.09000 * 109.48046 * 59.99960 * 24 22 21 42 42 H 1.09002 * 109.47244 * 299.99440 * 25 22 21 43 43 H 1.09004 * 109.47363 * 59.99915 * 25 22 21 44 44 H 1.08997 * 109.47229 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9818 2.6795 -0.0011 7 6 4.1940 3.3301 -1.1867 8 1 3.7361 4.2920 -1.3644 9 6 4.9991 2.7528 -2.1618 10 7 5.7076 1.6827 -1.8800 11 14 5.0735 3.4982 -3.8730 12 1 4.1897 4.6901 -3.9327 13 1 6.4699 3.9023 -4.1766 14 1 4.6206 2.4951 -4.8701 15 6 4.1551 3.3315 1.1658 16 8 4.0141 2.7400 2.2202 17 6 4.5131 4.7527 1.1650 18 6 4.6145 5.5604 2.2641 19 7 4.9563 6.7937 1.9870 20 6 5.1419 7.0962 0.7429 21 6 5.5321 8.4627 0.2413 22 6 7.0575 8.5746 0.2006 23 6 7.6224 7.5063 -0.7378 24 6 7.6218 8.3674 1.6075 25 6 7.4537 9.9616 -0.3093 26 16 4.8902 5.7297 -0.2522 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.9557 0.7806 -0.8907 31 1 3.9563 0.7805 0.8893 32 1 6.2691 1.2796 -2.5605 33 1 4.4341 5.2113 3.2701 34 1 5.1297 9.2237 0.9098 35 1 5.1302 8.6102 -0.7610 36 1 7.3401 6.5179 -0.3750 37 1 7.2203 7.6539 -1.7402 38 1 8.7091 7.5856 -0.7665 39 1 8.7084 8.4476 1.5787 40 1 7.2193 9.1285 2.2761 41 1 7.3395 7.3791 1.9705 42 1 7.0518 10.1088 -1.3117 43 1 7.0513 10.7230 0.3590 44 1 8.5404 10.0412 -0.3387 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933219943.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:44 Heat of formation + Delta-G solvation = -103.725441 kcal Electronic energy + Delta-G solvation = -28237.208639 eV Core-core repulsion = 24280.835190 eV Total energy + Delta-G solvation = -3956.373449 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.64398 -40.80504 -40.05776 -38.20070 -37.51397 -36.76411 -33.77243 -32.19524 -30.56091 -28.95609 -28.15668 -28.06836 -27.90232 -26.80620 -24.95654 -23.04105 -21.75855 -20.85798 -20.11047 -19.02205 -18.78065 -18.61670 -17.68072 -17.38509 -17.15086 -16.72716 -16.34719 -16.28678 -15.58603 -15.48612 -15.33029 -15.08169 -14.61029 -14.48567 -14.44857 -14.05375 -13.87591 -13.52600 -13.44126 -13.19380 -13.02533 -12.95158 -12.83363 -12.74193 -12.56576 -12.47947 -12.22571 -12.04062 -11.81715 -11.80774 -11.65109 -11.62111 -11.53913 -11.37798 -10.81284 -10.28965 -10.07093 -9.76669 -9.39022 -8.52807 -6.46796 -0.48010 0.60104 1.08728 1.20040 1.39444 1.44304 1.50399 1.57394 1.80359 2.19368 2.44225 2.74424 2.93801 3.30072 3.87881 3.92531 3.98702 4.00741 4.14622 4.28371 4.30215 4.36984 4.41756 4.54775 4.59392 4.63587 4.67844 4.72052 4.81059 4.88538 4.95243 4.97647 5.10268 5.12488 5.21403 5.23445 5.29778 5.34440 5.39451 5.49277 5.57501 5.71184 6.11481 6.75982 6.83779 6.86826 7.18695 7.66414 8.51022 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013925 B = 0.004223 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.224146 B = 6628.485640 C = 7876.283674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.451 3.549 4 O -0.533 6.533 5 C 0.130 3.870 6 N -0.427 5.427 7 C -0.361 4.361 8 H 0.098 0.902 9 C 0.033 3.967 10 N -0.869 5.869 11 Si 0.958 3.042 12 H -0.247 1.247 13 H -0.259 1.259 14 H -0.268 1.268 15 C 0.549 3.451 16 O -0.619 6.619 17 C -0.300 4.300 18 C 0.083 3.917 19 N -0.495 5.495 20 C -0.013 4.013 21 C -0.034 4.034 22 C -0.059 4.059 23 C -0.156 4.156 24 C -0.136 4.136 25 C -0.132 4.132 26 S 0.281 5.719 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.101 0.899 32 H 0.286 0.714 33 H 0.172 0.828 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.033 0.967 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.029 0.971 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.018 8.307 -4.248 9.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.294 3.706 4 O -0.422 6.422 5 C 0.004 3.996 6 N -0.145 5.145 7 C -0.493 4.493 8 H 0.115 0.885 9 C -0.176 4.176 10 N -0.502 5.502 11 Si 0.779 3.221 12 H -0.170 1.170 13 H -0.184 1.184 14 H -0.193 1.193 15 C 0.340 3.660 16 O -0.507 6.507 17 C -0.424 4.424 18 C -0.077 4.077 19 N -0.210 5.210 20 C -0.285 4.285 21 C -0.075 4.075 22 C -0.061 4.061 23 C -0.214 4.214 24 C -0.193 4.193 25 C -0.189 4.189 26 S 0.545 5.455 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.157 0.843 30 H 0.154 0.846 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.189 0.811 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.052 0.948 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.048 0.952 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.999 8.464 -4.561 9.666 hybrid contribution -0.520 -0.761 0.679 1.145 sum 0.479 7.702 -3.882 8.639 Atomic orbital electron populations 1.23537 0.75077 1.05760 1.02117 1.86505 1.24984 1.32526 1.84058 1.24945 0.93211 0.81434 0.71007 1.90568 1.67543 1.37552 1.46522 1.20906 0.85304 0.86838 1.06525 1.42889 1.57218 1.09274 1.05097 1.19550 1.31193 1.05212 0.93336 0.88531 1.26339 0.91907 0.95957 1.03354 1.69852 1.23359 1.20615 1.36346 0.85365 0.79914 0.79926 0.76929 1.17023 1.18355 1.19284 1.17614 0.78763 0.85735 0.83932 1.90618 1.58669 1.69002 1.32448 1.25771 1.18010 0.99592 0.99071 1.22267 0.98508 0.87641 0.99266 1.66242 1.16837 1.17699 1.20229 1.28766 1.00396 1.05044 0.94306 1.20563 0.96564 0.88109 1.02215 1.20505 0.92432 0.97339 0.95789 1.22104 1.01725 0.97829 0.99713 1.21825 1.00541 1.01013 0.95938 1.21795 1.02002 0.93510 1.01604 1.84678 1.57343 0.96415 1.07048 0.92698 0.92152 0.84262 0.84567 0.88141 0.90334 0.81113 0.88587 0.88013 0.94765 0.91180 0.91354 0.92051 0.92197 0.95159 0.91324 0.91695 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.56 113.37 1.20 1.97 16 2 O -0.36 -13.47 10.56 -51.39 -0.54 -14.01 16 3 C 0.45 20.30 8.02 71.24 0.57 20.87 16 4 O -0.53 -26.71 16.18 21.97 0.36 -26.36 16 5 C 0.13 6.12 5.57 85.63 0.48 6.59 16 6 N -0.43 -21.80 1.91 -644.24 -1.23 -23.04 16 7 C -0.36 -17.48 6.83 84.09 0.57 -16.90 16 8 H 0.10 4.63 5.43 -14.99 -0.08 4.55 16 9 C 0.03 1.52 5.13 84.94 0.44 1.96 16 10 N -0.87 -41.26 11.70 21.68 0.25 -41.01 16 11 Si 0.96 34.87 29.56 68.60 2.03 36.90 16 12 H -0.25 -8.57 7.11 99.48 0.71 -7.86 16 13 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 14 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 15 C 0.55 29.03 7.60 86.41 0.66 29.69 16 16 O -0.62 -35.02 16.46 -4.42 -0.07 -35.09 16 17 C -0.30 -14.02 6.35 24.10 0.15 -13.87 16 18 C 0.08 3.58 11.17 84.48 0.94 4.52 16 19 N -0.50 -18.98 9.63 -189.51 -1.82 -20.81 16 20 C -0.01 -0.44 4.93 88.47 0.44 0.00 16 21 C -0.03 -0.83 4.86 29.85 0.15 -0.69 16 22 C -0.06 -1.29 0.80 -52.18 -0.04 -1.33 16 23 C -0.16 -3.74 8.01 71.98 0.58 -3.16 16 24 C -0.14 -3.34 8.17 71.98 0.59 -2.75 16 25 C -0.13 -2.03 8.47 71.98 0.61 -1.42 16 26 S 0.28 10.87 16.91 -56.49 -0.96 9.91 16 27 H 0.05 1.54 8.13 -2.38 -0.02 1.52 16 28 H 0.06 1.63 8.13 -2.39 -0.02 1.61 16 29 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.14 6.37 6.06 -2.39 -0.01 6.36 16 31 H 0.10 4.74 7.41 -2.38 -0.02 4.72 16 32 H 0.29 12.51 8.31 -92.71 -0.77 11.74 16 33 H 0.17 7.13 8.06 -2.91 -0.02 7.11 16 34 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.03 1.02 6.03 -2.39 -0.01 1.00 16 37 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.03 0.93 6.62 -2.39 -0.02 0.92 16 42 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -64.84 376.31 6.28 -58.56 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.95 Total: 29.48 kcal Atomic # 6 Polarization: 18.14 SS G_CDS: 7.32 Total: 25.46 kcal Atomic # 7 Polarization: -82.05 SS G_CDS: -2.80 Total: -84.85 kcal Atomic # 8 Polarization: -75.21 SS G_CDS: -0.26 Total: -75.47 kcal Atomic # 14 Polarization: 34.87 SS G_CDS: 2.03 Total: 36.90 kcal Atomic # 16 Polarization: 10.87 SS G_CDS: -0.96 Total: 9.91 kcal Total: -64.84 6.28 -58.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933219943.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.164 kcal (2) G-P(sol) polarization free energy of solvation -64.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds