Wall clock time and date at job start Sat Apr 11 2020 05:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.52997 * 109.47441 * 239.99532 * 2 1 3 5 5 C 1.50703 * 109.46940 * 59.99972 * 4 2 1 6 6 H 1.08001 * 120.00043 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00213 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00116 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00201 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47135 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47080 * 119.99899 * 9 7 5 12 12 H 1.48502 * 109.47342 * 239.99982 * 9 7 5 13 13 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 14 14 N 1.46499 * 109.47198 * 299.99984 * 13 2 1 15 15 C 1.34777 * 119.99665 * 180.27868 * 14 13 2 16 16 O 1.21553 * 120.00289 * 359.72074 * 15 14 13 17 17 C 1.47846 * 119.99557 * 179.72375 * 15 14 13 18 18 C 1.40026 * 120.55315 * 179.97438 * 17 15 14 19 19 C 1.38359 * 118.28180 * 179.97438 * 18 17 15 20 20 C 1.38348 * 119.30816 * 0.02562 * 19 18 17 21 21 S 1.76196 * 119.46515 * 180.02562 * 20 19 18 22 22 C 1.81393 * 104.45254 * 89.99685 * 21 20 19 23 23 O 1.42101 * 104.28107 * 206.07318 * 21 20 19 24 24 O 1.42104 * 104.27400 * 333.92957 * 21 20 19 25 25 N 1.31934 * 121.07800 * 359.97438 * 20 19 18 26 26 C 1.31692 * 121.87762 * 359.77075 * 25 20 19 27 27 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 28 28 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 29 29 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 32 32 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 33 33 H 1.08995 * 109.47672 * 179.97438 * 4 2 1 34 34 H 1.09007 * 109.47288 * 300.00670 * 4 2 1 35 35 H 0.97000 * 120.00572 * 179.97438 * 8 7 5 36 36 H 1.09009 * 109.46730 * 179.97438 * 13 2 1 37 37 H 1.08998 * 109.46846 * 60.00315 * 13 2 1 38 38 H 0.97001 * 119.99790 * 359.97438 * 14 13 2 39 39 H 1.07991 * 120.85932 * 359.97438 * 18 17 15 40 40 H 1.07996 * 120.34498 * 179.97438 * 19 18 17 41 41 H 1.09005 * 109.47078 * 60.00061 * 22 21 20 42 42 H 1.08997 * 109.47804 * 180.02562 * 22 21 20 43 43 H 1.09005 * 109.47212 * 300.00437 * 22 21 20 44 44 H 1.08002 * 119.71777 * 180.24066 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8673 -2.3807 7 6 1.8704 -0.4824 -3.7319 8 7 2.6257 -1.5522 -3.8526 9 14 1.2483 0.3985 -5.2572 10 1 0.4247 1.5663 -4.8531 11 1 2.4037 0.8643 -6.0656 12 1 0.4226 -0.5343 -6.0654 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4454 15 6 1.8818 -0.4877 3.6695 16 8 2.5806 -1.4760 3.7812 17 6 1.3940 0.2129 4.8766 18 6 1.7295 -0.2522 6.1540 19 6 1.2479 0.4397 7.2511 20 6 0.4575 1.5578 7.0530 21 16 -0.1575 2.4425 8.4471 22 6 1.1196 3.6825 8.7958 23 8 -1.3421 3.0668 7.9714 24 8 -0.2066 1.4721 9.4841 25 7 0.1575 1.9730 5.8372 26 6 0.5958 1.3514 4.7621 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 -0.7209 -1.2494 34 1 1.6766 -1.7490 -1.2492 35 1 2.8594 -1.8841 -4.7335 36 1 3.1300 -0.7216 1.2491 37 1 1.6766 -1.7488 1.2493 38 1 0.9942 0.7584 2.3564 39 1 2.3482 -1.1284 6.2797 40 1 1.4857 0.1100 8.2516 41 1 1.2454 4.3287 7.9269 42 1 0.8188 4.2825 9.6546 43 1 2.0623 3.1814 9.0154 44 1 0.3319 1.7240 3.7833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935992220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:48 Heat of formation + Delta-G solvation = -77.011464 kcal Electronic energy + Delta-G solvation = -26741.229873 eV Core-core repulsion = 22786.014829 eV Total energy + Delta-G solvation = -3955.215044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.05674 -39.37795 -37.58953 -37.25891 -36.41845 -34.01833 -33.13304 -32.51854 -31.81469 -30.07775 -27.34314 -26.76864 -26.61812 -25.02034 -24.25753 -22.89380 -20.92748 -19.81741 -19.02370 -18.35956 -17.61807 -17.26833 -16.76109 -16.37395 -16.01663 -15.55112 -15.50054 -15.36941 -14.61390 -14.54759 -14.48390 -13.85711 -13.75568 -13.66912 -13.64635 -13.39205 -13.21317 -12.86480 -12.55970 -12.45129 -12.30640 -12.12988 -11.87898 -11.49218 -11.27720 -11.09650 -10.90045 -10.73119 -10.61515 -10.53111 -10.49518 -10.31397 -10.06554 -9.98713 -9.95423 -9.28974 -9.00512 -8.99754 -8.41931 -6.05732 -4.07304 -0.59245 -0.21755 0.60041 2.18102 2.38006 2.98119 3.16189 3.26592 3.35122 3.37195 3.39837 3.45312 3.92758 4.20830 4.21588 4.23157 4.39928 4.43652 4.48404 4.64216 4.89025 5.09339 5.19666 5.29834 5.35488 5.48108 5.49041 5.62305 5.81382 6.03816 6.08177 6.12953 6.25716 6.31620 6.53483 6.59930 6.94914 6.97354 6.97951 7.01650 7.38437 7.56548 7.67455 7.92296 8.01443 8.33667 8.97525 9.56367 11.05668 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026054 B = 0.002032 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.429154 B =13776.342078 C =14449.866566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.073 4.073 3 C -0.129 4.129 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.126 3.874 14 N -0.708 5.708 15 C 0.549 3.451 16 O -0.529 6.529 17 C -0.125 4.125 18 C -0.034 4.034 19 C -0.093 4.093 20 C -0.420 4.420 21 S 2.508 3.492 22 C -0.645 4.645 23 O -0.912 6.912 24 O -0.929 6.929 25 N -0.393 5.393 26 C 0.113 3.887 27 H 0.028 0.972 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.027 0.973 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.260 0.740 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.399 0.601 39 H 0.160 0.840 40 H 0.163 0.837 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.133 0.867 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.649 9.622 25.710 27.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.074 4.074 3 C -0.186 4.186 4 C -0.002 4.002 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.004 3.996 14 N -0.360 5.360 15 C 0.333 3.667 16 O -0.406 6.406 17 C -0.131 4.131 18 C -0.061 4.061 19 C -0.114 4.114 20 C -0.638 4.638 21 S 2.683 3.317 22 C -0.796 4.796 23 O -0.909 6.909 24 O -0.926 6.926 25 N -0.102 5.102 26 C -0.049 4.049 27 H 0.047 0.953 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.236 0.764 39 H 0.178 0.822 40 H 0.180 0.820 41 H 0.155 0.845 42 H 0.156 0.844 43 H 0.152 0.848 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.361 9.361 25.934 27.673 hybrid contribution 0.777 -0.044 -1.559 1.742 sum -1.584 9.317 24.375 26.143 Atomic orbital electron populations 1.21786 0.95114 1.01343 1.00382 1.20936 0.95595 0.95916 0.94910 1.21784 1.00645 0.95790 1.00364 1.19098 0.96400 0.95266 0.89389 1.21199 1.31254 1.12100 0.90441 0.92157 1.25018 0.95281 0.95075 0.99158 1.69967 1.36948 1.22980 1.23422 0.86583 0.78611 0.79682 0.83377 1.19775 1.21125 1.21108 1.21777 0.99236 0.96223 0.82368 1.46186 1.52266 1.31786 1.05732 1.17982 0.81154 0.84431 0.83093 1.90812 1.37595 1.25653 1.86583 1.21525 0.98911 0.96976 0.95639 1.21911 0.95213 0.98545 0.90439 1.22037 0.94073 0.93779 1.01532 1.33475 1.08742 1.08844 1.12756 1.05468 0.76527 0.76150 0.73557 1.30172 1.18773 1.17893 1.12741 1.93622 1.41043 1.76723 1.79487 1.93629 1.86192 1.58848 1.53902 1.67792 1.16177 1.29193 0.97065 1.23315 0.92240 0.91055 0.98279 0.95333 0.91159 0.93201 0.93225 0.91165 0.95357 0.96270 0.96254 0.93044 0.91249 0.91241 0.76398 0.82192 0.81971 0.84463 0.84421 0.84848 0.81115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 8.05 37.16 0.30 -1.82 16 2 C -0.07 -1.29 0.54 -154.51 -0.08 -1.38 16 3 C -0.13 -2.09 8.05 37.16 0.30 -1.79 16 4 C 0.04 0.84 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.14 7.65 -34.44 -0.26 -13.40 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 9 Si 0.89 20.79 29.54 -169.99 -5.02 15.76 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.13 2.04 4.56 -4.04 -0.02 2.02 16 14 N -0.71 -9.23 4.91 -61.25 -0.30 -9.54 16 15 C 0.55 7.44 7.78 -12.33 -0.10 7.35 16 16 O -0.53 -8.96 16.42 5.32 0.09 -8.88 16 17 C -0.13 -1.36 5.89 -104.82 -0.62 -1.98 16 18 C -0.03 -0.32 9.72 -38.87 -0.38 -0.69 16 19 C -0.09 -0.73 9.49 -39.50 -0.37 -1.10 16 20 C -0.42 -3.66 6.53 -17.47 -0.11 -3.78 16 21 S 2.51 17.16 5.86 -107.50 -0.63 16.53 16 22 C -0.64 -1.55 10.79 101.05 1.09 -0.46 16 23 O -0.91 -9.94 17.73 -57.54 -1.02 -10.96 16 24 O -0.93 -8.34 17.09 -57.54 -0.98 -9.32 16 25 N -0.39 -4.10 10.02 -12.11 -0.12 -4.22 16 26 C 0.11 1.12 10.71 -17.13 -0.18 0.94 16 27 H 0.03 0.37 6.86 -51.93 -0.36 0.01 16 28 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 32 H 0.03 0.36 6.86 -51.93 -0.36 0.00 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.40 4.27 4.23 -40.82 -0.17 4.09 16 39 H 0.16 1.34 7.74 -52.49 -0.41 0.93 16 40 H 0.16 0.79 7.55 -52.49 -0.40 0.39 16 41 H 0.14 0.26 8.14 -51.92 -0.42 -0.16 16 42 H 0.14 0.09 8.14 -51.93 -0.42 -0.33 16 43 H 0.13 0.08 8.14 -51.92 -0.42 -0.35 16 44 H 0.17 1.30 6.42 -52.49 -0.34 0.96 16 LS Contribution 375.60 15.07 5.66 5.66 Total: -1.00 -36.30 375.60 -8.19 -44.49 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -5.95 Total: -0.48 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -0.65 Total: -13.94 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.31 Total: -38.86 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -1.92 Total: -29.16 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 17.16 SS G_CDS: -0.63 Total: 16.53 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.30 -8.19 -44.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935992220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.525 kcal (2) G-P(sol) polarization free energy of solvation -36.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds