Wall clock time and date at job start Sat Apr 11 2020 05:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.52997 * 109.47441 * 239.99532 * 2 1 3 5 5 C 1.50703 * 109.46940 * 59.99972 * 4 2 1 6 6 H 1.08001 * 120.00043 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00213 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00116 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00201 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47135 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47080 * 119.99899 * 9 7 5 12 12 H 1.48502 * 109.47342 * 239.99982 * 9 7 5 13 13 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 14 14 N 1.46499 * 109.47198 * 299.99984 * 13 2 1 15 15 C 1.34777 * 119.99665 * 180.27868 * 14 13 2 16 16 O 1.21553 * 120.00289 * 359.72074 * 15 14 13 17 17 C 1.47846 * 119.99557 * 179.72375 * 15 14 13 18 18 C 1.40026 * 120.55315 * 179.97438 * 17 15 14 19 19 C 1.38359 * 118.28180 * 179.97438 * 18 17 15 20 20 C 1.38348 * 119.30816 * 0.02562 * 19 18 17 21 21 S 1.76196 * 119.46515 * 180.02562 * 20 19 18 22 22 C 1.81393 * 104.45254 * 89.99685 * 21 20 19 23 23 O 1.42101 * 104.28107 * 206.07318 * 21 20 19 24 24 O 1.42104 * 104.27400 * 333.92957 * 21 20 19 25 25 N 1.31934 * 121.07800 * 359.97438 * 20 19 18 26 26 C 1.31692 * 121.87762 * 359.77075 * 25 20 19 27 27 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 28 28 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 29 29 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 32 32 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 33 33 H 1.08995 * 109.47672 * 179.97438 * 4 2 1 34 34 H 1.09007 * 109.47288 * 300.00670 * 4 2 1 35 35 H 0.97000 * 120.00572 * 179.97438 * 8 7 5 36 36 H 1.09009 * 109.46730 * 179.97438 * 13 2 1 37 37 H 1.08998 * 109.46846 * 60.00315 * 13 2 1 38 38 H 0.97001 * 119.99790 * 359.97438 * 14 13 2 39 39 H 1.07991 * 120.85932 * 359.97438 * 18 17 15 40 40 H 1.07996 * 120.34498 * 179.97438 * 19 18 17 41 41 H 1.09005 * 109.47078 * 60.00061 * 22 21 20 42 42 H 1.08997 * 109.47804 * 180.02562 * 22 21 20 43 43 H 1.09005 * 109.47212 * 300.00437 * 22 21 20 44 44 H 1.08002 * 119.71777 * 180.24066 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8673 -2.3807 7 6 1.8704 -0.4824 -3.7319 8 7 2.6257 -1.5522 -3.8526 9 14 1.2483 0.3985 -5.2572 10 1 0.4247 1.5663 -4.8531 11 1 2.4037 0.8643 -6.0656 12 1 0.4226 -0.5343 -6.0654 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4454 15 6 1.8818 -0.4877 3.6695 16 8 2.5806 -1.4760 3.7812 17 6 1.3940 0.2129 4.8766 18 6 1.7295 -0.2522 6.1540 19 6 1.2479 0.4397 7.2511 20 6 0.4575 1.5578 7.0530 21 16 -0.1575 2.4425 8.4471 22 6 1.1196 3.6825 8.7958 23 8 -1.3421 3.0668 7.9714 24 8 -0.2066 1.4721 9.4841 25 7 0.1575 1.9730 5.8372 26 6 0.5958 1.3514 4.7621 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 -0.7209 -1.2494 34 1 1.6766 -1.7490 -1.2492 35 1 2.8594 -1.8841 -4.7335 36 1 3.1300 -0.7216 1.2491 37 1 1.6766 -1.7488 1.2493 38 1 0.9942 0.7584 2.3564 39 1 2.3482 -1.1284 6.2797 40 1 1.4857 0.1100 8.2516 41 1 1.2454 4.3287 7.9269 42 1 0.8188 4.2825 9.6546 43 1 2.0623 3.1814 9.0154 44 1 0.3319 1.7240 3.7833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935992220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:47 Heat of formation + Delta-G solvation = -105.001681 kcal Electronic energy + Delta-G solvation = -26742.443620 eV Core-core repulsion = 22786.014829 eV Total energy + Delta-G solvation = -3956.428791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.90541 -40.42522 -38.68209 -38.20117 -37.04363 -35.44401 -34.18480 -33.85078 -32.80537 -30.31793 -29.15890 -28.01591 -27.97145 -26.08796 -25.03179 -24.56126 -22.02077 -20.42263 -20.22578 -19.15982 -18.62655 -18.39446 -18.06323 -17.27525 -16.87616 -16.62501 -16.49451 -16.30116 -16.13446 -15.57867 -15.45477 -14.91739 -14.80947 -14.56481 -14.29466 -14.25233 -13.94977 -13.93652 -13.91028 -13.80284 -13.19431 -13.08460 -12.90882 -12.70829 -12.61860 -12.54871 -12.34957 -12.24704 -11.97157 -11.94400 -11.62753 -11.55788 -11.28034 -11.02343 -10.86980 -10.78443 -10.73290 -10.52168 -10.21316 -8.14401 -6.21606 -1.13632 -0.88353 -0.08822 1.41479 1.42859 1.43260 1.54264 1.70749 1.90953 2.37077 2.44312 2.79924 2.94059 3.20607 3.33937 3.47440 3.57352 3.75309 3.79084 3.93366 4.05880 4.12316 4.19688 4.28321 4.30801 4.52842 4.66363 4.69377 4.73199 4.80507 4.94364 4.98298 5.04097 5.12324 5.13858 5.28009 5.42963 5.51029 5.53163 5.56290 5.79590 5.90140 6.25636 6.29422 6.35770 6.93927 6.96015 7.46227 8.98153 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026054 B = 0.002032 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.429154 B =13776.342078 C =14449.866566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.065 4.065 3 C -0.124 4.124 4 C 0.039 3.961 5 C -0.511 4.511 6 H 0.073 0.927 7 C -0.006 4.006 8 N -0.938 5.938 9 Si 0.957 3.043 10 H -0.257 1.257 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.140 3.860 14 N -0.697 5.697 15 C 0.554 3.446 16 O -0.569 6.569 17 C -0.141 4.141 18 C -0.036 4.036 19 C -0.089 4.089 20 C -0.421 4.421 21 S 2.510 3.490 22 C -0.616 4.616 23 O -0.960 6.960 24 O -0.956 6.956 25 N -0.414 5.414 26 C 0.114 3.886 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.038 0.962 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.070 0.930 33 H -0.011 1.011 34 H -0.013 1.013 35 H 0.259 0.741 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.413 0.587 39 H 0.165 0.835 40 H 0.192 0.808 41 H 0.150 0.850 42 H 0.164 0.836 43 H 0.161 0.839 44 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.159 12.423 27.756 30.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.065 4.065 3 C -0.182 4.182 4 C 0.001 3.999 5 C -0.549 4.549 6 H 0.091 0.909 7 C -0.203 4.203 8 N -0.579 5.579 9 Si 0.783 3.217 10 H -0.180 1.180 11 H -0.211 1.211 12 H -0.212 1.212 13 C 0.016 3.984 14 N -0.350 5.350 15 C 0.341 3.659 16 O -0.449 6.449 17 C -0.146 4.146 18 C -0.063 4.063 19 C -0.109 4.109 20 C -0.638 4.638 21 S 2.688 3.312 22 C -0.771 4.771 23 O -0.957 6.957 24 O -0.953 6.953 25 N -0.122 5.122 26 C -0.047 4.047 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.007 0.993 34 H 0.005 0.995 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.253 0.747 39 H 0.183 0.817 40 H 0.209 0.791 41 H 0.168 0.832 42 H 0.182 0.818 43 H 0.179 0.821 44 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -2.926 12.167 27.972 30.643 hybrid contribution 0.988 -0.887 -2.045 2.439 sum -1.938 11.280 25.927 28.340 Atomic orbital electron populations 1.21735 0.93656 1.01111 1.01764 1.20720 0.96645 0.96419 0.92731 1.21729 1.00148 0.94492 1.01800 1.18980 0.94444 0.94237 0.92202 1.21620 1.30244 1.11997 0.91025 0.90896 1.25931 0.95747 0.95892 1.02700 1.70117 1.38889 1.24937 1.23996 0.85515 0.78020 0.78833 0.79373 1.18044 1.21122 1.21222 1.21347 0.98337 0.95552 0.83146 1.45919 1.52344 1.31980 1.04733 1.18329 0.80132 0.83795 0.83684 1.90794 1.39442 1.27516 1.87149 1.21273 1.00705 0.97922 0.94733 1.22112 0.95022 0.98744 0.90437 1.22346 0.93205 0.92976 1.02392 1.33894 1.07889 1.09161 1.12849 1.05374 0.77103 0.76375 0.72313 1.29993 1.16990 1.15824 1.14343 1.93565 1.44838 1.77268 1.80040 1.93590 1.87145 1.60599 1.53958 1.67851 1.16871 1.29849 0.97677 1.23593 0.91517 0.90438 0.99192 0.91192 0.92442 0.94320 0.94111 0.92486 0.91075 0.99302 0.99463 0.93221 0.92626 0.92903 0.74722 0.81698 0.79083 0.83175 0.81843 0.82072 0.79170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.97 8.05 71.98 0.58 -3.39 16 2 C -0.06 -2.28 0.54 -52.18 -0.03 -2.31 16 3 C -0.12 -3.85 8.05 71.98 0.58 -3.27 16 4 C 0.04 1.90 4.04 29.85 0.12 2.02 16 5 C -0.51 -26.59 7.65 25.60 0.20 -26.39 16 6 H 0.07 3.55 5.68 -2.91 -0.02 3.53 16 7 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 8 N -0.94 -56.13 13.29 21.45 0.28 -55.84 16 9 Si 0.96 42.95 29.54 68.60 2.03 44.98 16 10 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 11 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 13 C 0.14 4.57 4.56 86.38 0.39 4.97 16 14 N -0.70 -17.29 4.91 -465.96 -2.29 -19.58 16 15 C 0.55 14.64 7.78 86.79 0.68 15.31 16 16 O -0.57 -19.49 16.42 -3.88 -0.06 -19.55 16 17 C -0.14 -2.86 5.89 -19.99 -0.12 -2.98 16 18 C -0.04 -0.62 9.72 22.73 0.22 -0.39 16 19 C -0.09 -1.18 9.49 22.32 0.21 -0.97 16 20 C -0.42 -6.47 6.53 84.70 0.55 -5.92 16 21 S 2.51 29.26 5.86 -56.49 -0.33 28.93 16 22 C -0.62 -0.24 10.79 113.37 1.22 0.98 16 23 O -0.96 -20.11 17.73 -127.65 -2.26 -22.37 16 24 O -0.96 -15.54 17.09 -127.65 -2.18 -17.72 16 25 N -0.41 -7.78 10.02 -192.23 -1.93 -9.71 16 26 C 0.11 2.02 10.71 85.02 0.91 2.93 16 27 H 0.07 1.62 6.86 -2.39 -0.02 1.60 16 28 H 0.06 1.97 6.62 -2.38 -0.02 1.96 16 29 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.92 6.62 -2.38 -0.02 1.91 16 32 H 0.07 1.58 6.86 -2.39 -0.02 1.56 16 33 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 34 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 35 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 36 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 38 H 0.41 7.67 4.23 -92.71 -0.39 7.28 16 39 H 0.17 2.60 7.74 -2.92 -0.02 2.58 16 40 H 0.19 1.31 7.55 -2.91 -0.02 1.29 16 41 H 0.15 -0.13 8.14 -2.39 -0.02 -0.15 16 42 H 0.16 -0.60 8.14 -2.39 -0.02 -0.61 16 43 H 0.16 -0.69 8.14 -2.39 -0.02 -0.71 16 44 H 0.19 2.32 6.42 -2.91 -0.02 2.30 16 Total: -1.00 -82.63 375.60 -0.12 -82.75 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 0.64 Total: 7.39 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: 5.98 Total: -19.27 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -3.93 Total: -85.14 kcal Atomic # 8 Polarization: -55.14 SS G_CDS: -4.51 Total: -59.65 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: 29.26 SS G_CDS: -0.33 Total: 28.93 kcal Total: -82.63 -0.12 -82.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935992220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.255 kcal (2) G-P(sol) polarization free energy of solvation -82.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds