Wall clock time and date at job start Sat Apr 11 2020 05:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21527 * 119.99945 * 2 1 4 4 C 1.40296 * 120.00039 * 180.02562 * 2 1 3 5 5 C 1.35487 * 119.99853 * 175.30320 * 4 2 1 6 6 C 1.50705 * 119.99876 * 185.74194 * 5 4 2 7 7 N 1.36503 * 120.00454 * 5.74281 * 5 4 2 8 8 C 1.38855 * 120.00329 * 237.60043 * 7 5 4 9 9 N 1.31729 * 119.79432 * 5.54758 * 8 7 5 10 10 C 1.33979 * 119.78823 * 179.97438 * 9 8 7 11 11 C 1.40470 * 120.87826 * 179.97438 * 10 9 8 12 12 C 1.36179 * 119.75707 * 179.97438 * 11 10 9 13 13 C 1.39316 * 120.93140 * 0.04726 * 12 11 10 14 14 C 1.36152 * 120.92640 * 359.95008 * 13 12 11 15 15 C 1.40528 * 119.74987 * 0.02562 * 14 13 12 16 16 N 1.33924 * 120.87814 * 179.97438 * 15 14 13 17 17 C 1.31788 * 119.78680 * 179.75066 * 16 15 14 18 18 N 1.38711 * 119.79762 * 180.25254 * 17 16 15 19 19 C 1.34773 * 119.99897 * 0.27673 * 18 17 16 20 20 O 1.21734 * 120.00255 * 359.97438 * 19 18 17 21 21 C 1.46148 * 119.99999 * 180.02562 * 19 18 17 22 22 H 1.07998 * 119.99593 * 359.97438 * 21 19 18 23 23 C 1.40130 * 119.99745 * 180.02562 * 21 19 18 24 24 N 1.30633 * 120.00535 * 0.02562 * 23 21 19 25 25 Si 1.86802 * 119.99584 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47417 * 59.99881 * 25 23 21 27 27 H 1.48504 * 109.47209 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47095 * 299.99997 * 25 23 21 29 29 H 1.08998 * 109.46607 * 239.99521 * 1 2 3 30 30 H 1.08999 * 109.47424 * 120.00016 * 1 2 3 31 31 H 1.08999 * 109.47175 * 359.97438 * 1 2 3 32 32 H 1.07999 * 119.99971 * 355.30620 * 4 2 1 33 33 H 1.09000 * 109.46999 * 94.72771 * 6 5 4 34 34 H 1.08997 * 109.47110 * 214.72180 * 6 5 4 35 35 H 1.08993 * 109.47229 * 334.72616 * 6 5 4 36 36 H 0.96996 * 119.99816 * 57.59005 * 7 5 4 37 37 H 1.07999 * 120.11985 * 0.04309 * 11 10 9 38 38 H 1.07996 * 119.53599 * 179.97438 * 12 11 10 39 39 H 1.07994 * 119.53651 * 179.97438 * 13 12 11 40 40 H 1.07998 * 120.12894 * 180.02562 * 14 13 12 41 41 H 0.97001 * 119.99911 * 180.28079 * 18 17 16 42 42 H 0.96998 * 120.00005 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1146 1.0525 0.0000 4 6 2.2085 -1.2150 -0.0005 5 6 3.5599 -1.2169 -0.0966 6 6 4.3042 -2.5208 -0.2276 7 7 4.2475 -0.0378 -0.0748 8 6 5.0802 0.3001 -1.1333 9 7 5.1204 -0.4653 -2.2046 10 6 5.9235 -0.1389 -3.2261 11 6 5.9848 -0.9388 -4.3792 12 6 6.8087 -0.5852 -5.4041 13 6 7.5960 0.5615 -5.3270 14 6 7.5624 1.3606 -4.2252 15 6 6.7238 1.0278 -3.1478 16 7 6.6734 1.7973 -2.0528 17 6 5.8755 1.4676 -1.0571 18 7 5.8192 2.2673 0.0749 19 6 6.5749 3.3806 0.1517 20 8 7.3071 3.6842 -0.7722 21 6 6.5160 4.2229 1.3446 22 1 5.8666 3.9534 2.1643 23 6 7.3013 5.3808 1.4241 24 7 8.0856 5.7076 0.4319 25 14 7.2254 6.4577 2.9486 26 1 7.6341 5.6647 4.1358 27 1 8.1446 7.6126 2.7850 28 1 5.8377 6.9517 3.1371 29 1 -0.3632 -0.5139 0.8900 30 1 -0.3634 -0.5138 -0.8900 31 1 -0.3633 1.0277 0.0005 32 1 1.6712 -2.1488 0.0756 33 1 4.4846 -2.7318 -1.2817 34 1 5.2570 -2.4495 0.2969 35 1 3.7093 -3.3239 0.2071 36 1 4.1542 0.5640 0.6802 37 1 5.3798 -1.8304 -4.4530 38 1 6.8533 -1.2031 -6.2888 39 1 8.2418 0.8205 -6.1530 40 1 8.1779 2.2468 -4.1792 41 1 5.2360 2.0252 0.8112 42 1 8.6288 6.5093 0.4869 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163737321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:23 Heat of formation + Delta-G solvation = 42.479287 kcal Electronic energy + Delta-G solvation = -29098.843181 eV Core-core repulsion = 25045.658444 eV Total energy + Delta-G solvation = -4053.184737 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.16464 -39.80923 -38.28487 -37.42814 -36.03047 -34.17210 -33.36499 -32.55734 -31.87714 -30.48209 -29.68792 -28.84931 -27.68222 -26.59428 -24.53642 -23.29602 -21.89602 -21.23297 -20.41788 -19.64342 -18.56336 -18.22558 -17.09926 -16.64884 -16.15739 -15.86956 -15.51681 -15.22963 -15.05266 -14.83408 -14.71468 -14.12785 -13.91829 -13.72052 -13.53809 -13.35789 -13.04092 -12.94163 -12.59328 -12.54512 -12.19793 -12.13222 -11.95568 -11.64510 -11.46587 -11.31318 -11.29747 -10.93801 -10.84409 -10.65035 -10.35951 -10.28980 -9.51572 -9.39926 -9.00152 -8.82964 -8.76006 -7.86091 -7.54898 -7.07387 -6.33653 -4.83137 0.62612 0.97960 1.24849 2.46975 2.94025 3.00654 3.08620 3.13654 3.15705 3.26252 3.75138 4.10658 4.31975 4.38952 4.48382 4.62564 4.66603 4.94799 5.01607 5.14680 5.20499 5.24144 5.31817 5.36209 5.41573 5.49041 5.54508 5.64049 5.66304 5.76578 5.77643 5.92565 6.06073 6.26359 6.31387 6.41898 6.62283 6.71545 6.90254 6.98981 7.26275 7.27076 7.38149 7.73117 7.77146 7.97608 8.02976 8.42634 8.82761 9.12347 10.38253 10.55970 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.007954 B = 0.004617 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3519.531242 B = 6062.933665 C = 8930.299780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.375 3.625 3 O -0.475 6.475 4 C -0.315 4.315 5 C 0.257 3.743 6 C -0.137 4.137 7 N -0.646 5.646 8 C 0.343 3.657 9 N -0.478 5.478 10 C 0.067 3.933 11 C -0.086 4.086 12 C -0.120 4.120 13 C -0.119 4.119 14 C -0.075 4.075 15 C 0.089 3.911 16 N -0.411 5.411 17 C 0.353 3.647 18 N -0.656 5.656 19 C 0.529 3.471 20 O -0.504 6.504 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.086 3.914 24 N -0.757 5.757 25 Si 0.914 3.086 26 H -0.267 1.267 27 H -0.279 1.279 28 H -0.266 1.266 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.138 0.862 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.424 0.576 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.136 0.864 41 H 0.395 0.605 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.501 -16.497 -2.744 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.258 3.742 3 O -0.355 6.355 4 C -0.338 4.338 5 C 0.156 3.844 6 C -0.195 4.195 7 N -0.280 5.280 8 C 0.087 3.913 9 N -0.201 5.201 10 C -0.057 4.057 11 C -0.106 4.106 12 C -0.141 4.141 13 C -0.139 4.139 14 C -0.095 4.095 15 C -0.036 4.036 16 N -0.134 5.134 17 C 0.097 3.903 18 N -0.303 5.303 19 C 0.333 3.667 20 O -0.379 6.379 21 C -0.572 4.572 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.385 5.385 25 Si 0.739 3.261 26 H -0.191 1.191 27 H -0.203 1.203 28 H -0.191 1.191 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.156 0.844 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.267 0.733 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.154 0.846 41 H 0.230 0.770 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.375 -15.561 -3.674 18.050 hybrid contribution -0.716 0.478 1.502 1.731 sum -9.091 -15.083 -2.173 17.745 Atomic orbital electron populations 1.22194 0.95139 1.04370 1.03648 1.20688 0.91888 0.88711 0.72900 1.90634 1.71654 1.35124 1.38090 1.22247 0.93456 1.00485 1.17659 1.20442 0.90825 0.87399 0.85783 1.21285 1.00466 0.93010 1.04707 1.41401 1.45223 1.20801 1.20530 1.19150 0.91480 0.91664 0.88982 1.67967 1.22007 1.30562 0.99517 1.19086 0.96624 0.95880 0.94073 1.20492 0.99392 0.99070 0.91608 1.20728 0.97237 0.97506 0.98604 1.20783 0.99916 0.95154 0.98025 1.20786 0.97436 0.99964 0.91337 1.19574 0.97516 0.92229 0.94273 1.69211 1.18163 1.27344 0.98681 1.19595 0.91573 0.88607 0.90517 1.44692 1.45222 1.25632 1.14741 1.18610 0.80014 0.78538 0.89499 1.90757 1.38811 1.69177 1.39153 1.20763 1.26875 1.08069 1.01531 0.90989 1.25713 0.93533 0.97239 0.97017 1.69967 1.17532 1.21561 1.29441 0.86315 0.78957 0.79285 0.81590 1.19126 1.20349 1.19082 0.89593 0.89702 0.90502 0.84388 0.88433 0.90870 0.90109 0.73252 0.85559 0.85850 0.85693 0.84633 0.76997 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.77 10.19 36.01 0.37 -1.40 16 2 C 0.37 4.76 6.98 -33.54 -0.23 4.53 16 3 O -0.47 -8.09 14.86 5.34 0.08 -8.01 16 4 C -0.31 -3.40 9.34 -39.79 -0.37 -3.77 16 5 C 0.26 3.15 5.79 -81.49 -0.47 2.68 16 6 C -0.14 -1.33 9.49 36.01 0.34 -0.99 16 7 N -0.65 -9.87 3.58 -7.92 -0.03 -9.90 16 8 C 0.34 6.41 7.31 -154.83 -1.13 5.28 16 9 N -0.48 -8.56 8.57 -9.80 -0.08 -8.65 16 10 C 0.07 1.23 6.59 -84.77 -0.56 0.67 16 11 C -0.09 -1.24 9.98 -39.48 -0.39 -1.64 16 12 C -0.12 -1.53 9.95 -39.92 -0.40 -1.93 16 13 C -0.12 -1.65 9.95 -39.93 -0.40 -2.05 16 14 C -0.08 -1.35 9.98 -39.47 -0.39 -1.75 16 15 C 0.09 1.86 6.59 -84.77 -0.56 1.30 16 16 N -0.41 -10.09 7.94 -9.83 -0.08 -10.17 16 17 C 0.35 7.96 7.46 -154.92 -1.16 6.81 16 18 N -0.66 -15.16 5.35 -12.43 -0.07 -15.22 16 19 C 0.53 14.95 7.70 -13.09 -0.10 14.85 16 20 O -0.50 -16.15 13.26 5.16 0.07 -16.09 16 21 C -0.54 -14.67 9.53 -35.70 -0.34 -15.01 16 22 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 23 C 0.09 2.34 5.50 -17.35 -0.10 2.24 16 24 N -0.76 -22.11 11.82 55.55 0.66 -21.45 16 25 Si 0.91 19.57 29.56 -169.99 -5.02 14.55 16 26 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 27 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 28 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.76 8.12 -51.93 -0.42 0.34 16 32 H 0.14 1.02 8.03 -52.49 -0.42 0.60 16 33 H 0.10 1.04 7.51 -51.93 -0.39 0.65 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.55 8.02 -51.93 -0.42 0.13 16 36 H 0.42 6.36 5.90 -40.82 -0.24 6.12 16 37 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 38 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.14 2.50 8.06 -52.49 -0.42 2.08 16 41 H 0.40 7.68 6.82 -40.82 -0.28 7.40 16 42 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16 LS Contribution 365.79 15.07 5.51 5.51 Total: -1.00 -36.77 365.79 -9.53 -46.30 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -4.67 Total: 13.30 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: -5.89 Total: 9.83 kcal Atomic # 7 Polarization: -65.79 SS G_CDS: 0.40 Total: -65.39 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: 0.15 Total: -24.10 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.77 -9.53 -46.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163737321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.779 kcal (2) G-P(sol) polarization free energy of solvation -36.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds