Wall clock time and date at job start Sat Apr 11 2020 05:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21527 * 119.99945 * 2 1 4 4 C 1.40296 * 120.00039 * 180.02562 * 2 1 3 5 5 C 1.35487 * 119.99853 * 175.30320 * 4 2 1 6 6 C 1.50705 * 119.99876 * 185.74194 * 5 4 2 7 7 N 1.36503 * 120.00454 * 5.74281 * 5 4 2 8 8 C 1.38855 * 120.00329 * 237.60043 * 7 5 4 9 9 N 1.31729 * 119.79432 * 5.54758 * 8 7 5 10 10 C 1.33979 * 119.78823 * 179.97438 * 9 8 7 11 11 C 1.40470 * 120.87826 * 179.97438 * 10 9 8 12 12 C 1.36179 * 119.75707 * 179.97438 * 11 10 9 13 13 C 1.39316 * 120.93140 * 0.04726 * 12 11 10 14 14 C 1.36152 * 120.92640 * 359.95008 * 13 12 11 15 15 C 1.40528 * 119.74987 * 0.02562 * 14 13 12 16 16 N 1.33924 * 120.87814 * 179.97438 * 15 14 13 17 17 C 1.31788 * 119.78680 * 179.75066 * 16 15 14 18 18 N 1.38711 * 119.79762 * 180.25254 * 17 16 15 19 19 C 1.34773 * 119.99897 * 0.27673 * 18 17 16 20 20 O 1.21734 * 120.00255 * 359.97438 * 19 18 17 21 21 C 1.46148 * 119.99999 * 180.02562 * 19 18 17 22 22 H 1.07998 * 119.99593 * 359.97438 * 21 19 18 23 23 C 1.40130 * 119.99745 * 180.02562 * 21 19 18 24 24 N 1.30633 * 120.00535 * 0.02562 * 23 21 19 25 25 Si 1.86802 * 119.99584 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47417 * 59.99881 * 25 23 21 27 27 H 1.48504 * 109.47209 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47095 * 299.99997 * 25 23 21 29 29 H 1.08998 * 109.46607 * 239.99521 * 1 2 3 30 30 H 1.08999 * 109.47424 * 120.00016 * 1 2 3 31 31 H 1.08999 * 109.47175 * 359.97438 * 1 2 3 32 32 H 1.07999 * 119.99971 * 355.30620 * 4 2 1 33 33 H 1.09000 * 109.46999 * 94.72771 * 6 5 4 34 34 H 1.08997 * 109.47110 * 214.72180 * 6 5 4 35 35 H 1.08993 * 109.47229 * 334.72616 * 6 5 4 36 36 H 0.96996 * 119.99816 * 57.59005 * 7 5 4 37 37 H 1.07999 * 120.11985 * 0.04309 * 11 10 9 38 38 H 1.07996 * 119.53599 * 179.97438 * 12 11 10 39 39 H 1.07994 * 119.53651 * 179.97438 * 13 12 11 40 40 H 1.07998 * 120.12894 * 180.02562 * 14 13 12 41 41 H 0.97001 * 119.99911 * 180.28079 * 18 17 16 42 42 H 0.96998 * 120.00005 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1146 1.0525 0.0000 4 6 2.2085 -1.2150 -0.0005 5 6 3.5599 -1.2169 -0.0966 6 6 4.3042 -2.5208 -0.2276 7 7 4.2475 -0.0378 -0.0748 8 6 5.0802 0.3001 -1.1333 9 7 5.1204 -0.4653 -2.2046 10 6 5.9235 -0.1389 -3.2261 11 6 5.9848 -0.9388 -4.3792 12 6 6.8087 -0.5852 -5.4041 13 6 7.5960 0.5615 -5.3270 14 6 7.5624 1.3606 -4.2252 15 6 6.7238 1.0278 -3.1478 16 7 6.6734 1.7973 -2.0528 17 6 5.8755 1.4676 -1.0571 18 7 5.8192 2.2673 0.0749 19 6 6.5749 3.3806 0.1517 20 8 7.3071 3.6842 -0.7722 21 6 6.5160 4.2229 1.3446 22 1 5.8666 3.9534 2.1643 23 6 7.3013 5.3808 1.4241 24 7 8.0856 5.7076 0.4319 25 14 7.2254 6.4577 2.9486 26 1 7.6341 5.6647 4.1358 27 1 8.1446 7.6126 2.7850 28 1 5.8377 6.9517 3.1371 29 1 -0.3632 -0.5139 0.8900 30 1 -0.3634 -0.5138 -0.8900 31 1 -0.3633 1.0277 0.0005 32 1 1.6712 -2.1488 0.0756 33 1 4.4846 -2.7318 -1.2817 34 1 5.2570 -2.4495 0.2969 35 1 3.7093 -3.3239 0.2071 36 1 4.1542 0.5640 0.6802 37 1 5.3798 -1.8304 -4.4530 38 1 6.8533 -1.2031 -6.2888 39 1 8.2418 0.8205 -6.1530 40 1 8.1779 2.2468 -4.1792 41 1 5.2360 2.0252 0.8112 42 1 8.6288 6.5093 0.4869 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163737321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:22 Heat of formation + Delta-G solvation = 17.402199 kcal Electronic energy + Delta-G solvation = -29099.930605 eV Core-core repulsion = 25045.658444 eV Total energy + Delta-G solvation = -4054.272161 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.58275 -40.90221 -39.93124 -38.86426 -37.38590 -35.82142 -34.89500 -34.58482 -33.15450 -31.42830 -31.04627 -30.14214 -28.61817 -28.46762 -26.03683 -24.71878 -23.21286 -22.40580 -22.11408 -20.90538 -19.92888 -19.68432 -18.53873 -18.39246 -17.44704 -17.20234 -16.98459 -16.69651 -16.39700 -16.19596 -15.83622 -15.68131 -15.31576 -14.90499 -14.84586 -14.66454 -14.55607 -14.23081 -13.83446 -13.35584 -13.30450 -13.22040 -12.97773 -12.92338 -12.91819 -12.79600 -12.76846 -12.63354 -12.58158 -12.32425 -12.07600 -11.41903 -11.09402 -10.85747 -10.53196 -10.47154 -9.99918 -9.54473 -9.20220 -8.54830 -8.37989 -6.99351 -0.63709 -0.33752 0.07445 1.06471 1.36716 1.40755 1.52977 1.76846 1.88629 2.03092 2.10042 2.34353 2.43635 3.10449 3.13675 3.31226 3.47634 3.56320 3.61091 3.89401 4.10972 4.13742 4.31378 4.41914 4.48465 4.50153 4.64402 4.67275 4.74282 4.78126 4.93261 5.03903 5.04337 5.17738 5.21020 5.23897 5.28767 5.37751 5.48960 5.52669 5.66379 5.85038 5.99805 6.02587 6.15233 6.56419 6.71434 6.80212 6.83645 7.27810 8.31413 8.53619 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.007954 B = 0.004617 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3519.531242 B = 6062.933665 C = 8930.299780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.362 3.638 3 O -0.529 6.529 4 C -0.294 4.294 5 C 0.228 3.772 6 C -0.129 4.129 7 N -0.641 5.641 8 C 0.346 3.654 9 N -0.467 5.467 10 C 0.059 3.941 11 C -0.088 4.088 12 C -0.095 4.095 13 C -0.094 4.094 14 C -0.111 4.111 15 C 0.045 3.955 16 N -0.462 5.462 17 C 0.317 3.683 18 N -0.655 5.655 19 C 0.516 3.484 20 O -0.558 6.558 21 C -0.563 4.563 22 H 0.095 0.905 23 C 0.029 3.971 24 N -0.812 5.812 25 Si 1.005 2.995 26 H -0.250 1.250 27 H -0.272 1.272 28 H -0.254 1.254 29 H 0.117 0.883 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.184 0.816 33 H 0.090 0.910 34 H 0.061 0.939 35 H 0.119 0.881 36 H 0.421 0.579 37 H 0.160 0.840 38 H 0.179 0.821 39 H 0.165 0.835 40 H 0.112 0.888 41 H 0.409 0.591 42 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.651 -19.878 -3.231 23.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.249 3.751 3 O -0.413 6.413 4 C -0.317 4.317 5 C 0.129 3.871 6 C -0.186 4.186 7 N -0.275 5.275 8 C 0.091 3.909 9 N -0.190 5.190 10 C -0.064 4.064 11 C -0.107 4.107 12 C -0.114 4.114 13 C -0.113 4.113 14 C -0.132 4.132 15 C -0.079 4.079 16 N -0.185 5.185 17 C 0.062 3.938 18 N -0.304 5.304 19 C 0.321 3.679 20 O -0.437 6.437 21 C -0.599 4.599 22 H 0.113 0.887 23 C -0.187 4.187 24 N -0.441 5.441 25 Si 0.823 3.177 26 H -0.174 1.174 27 H -0.197 1.197 28 H -0.178 1.178 29 H 0.135 0.865 30 H 0.125 0.875 31 H 0.081 0.919 32 H 0.201 0.799 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.137 0.863 36 H 0.263 0.737 37 H 0.177 0.823 38 H 0.196 0.804 39 H 0.182 0.818 40 H 0.130 0.870 41 H 0.246 0.754 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.598 -19.050 -4.158 22.192 hybrid contribution -0.119 1.342 1.419 1.956 sum -10.716 -17.708 -2.740 20.879 Atomic orbital electron populations 1.22197 0.92112 1.04326 1.06070 1.21534 0.93908 0.88541 0.71083 1.90643 1.72982 1.37080 1.40602 1.22660 0.92802 1.01454 1.14777 1.21019 0.91682 0.87054 0.87312 1.21293 1.00413 0.92574 1.04359 1.41409 1.44693 1.21872 1.19499 1.19010 0.91345 0.90432 0.90109 1.68120 1.21927 1.29759 0.99175 1.19615 0.95862 0.95467 0.95475 1.20934 1.00087 0.99437 0.90286 1.21345 0.94274 0.96459 0.99369 1.21269 0.99087 0.94078 0.96909 1.20863 0.98432 1.00979 0.92878 1.20002 0.99946 0.93753 0.94223 1.68967 1.19386 1.29753 1.00352 1.19769 0.93428 0.90349 0.90243 1.44034 1.45315 1.25104 1.15901 1.19002 0.79869 0.79629 0.89366 1.90702 1.41122 1.71087 1.40814 1.21336 1.27757 1.08769 1.02022 0.88735 1.27038 0.92246 0.98544 1.00897 1.70153 1.18859 1.22559 1.32543 0.84968 0.79489 0.76806 0.76434 1.17402 1.19688 1.17839 0.86504 0.87522 0.91939 0.79857 0.89134 0.91957 0.86263 0.73674 0.82279 0.80397 0.81776 0.86985 0.75436 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.94 10.19 71.24 0.73 -2.21 16 2 C 0.36 8.74 6.98 26.19 0.18 8.92 16 3 O -0.53 -18.56 14.86 -3.80 -0.06 -18.62 16 4 C -0.29 -5.54 9.34 22.13 0.21 -5.33 16 5 C 0.23 5.32 5.79 41.20 0.24 5.56 16 6 C -0.13 -2.23 9.49 71.24 0.68 -1.55 16 7 N -0.64 -20.30 3.58 -178.98 -0.64 -20.94 16 8 C 0.35 13.67 7.31 133.89 0.98 14.65 16 9 N -0.47 -16.90 8.57 -184.93 -1.59 -18.49 16 10 C 0.06 2.20 6.59 40.21 0.26 2.46 16 11 C -0.09 -2.28 9.98 22.33 0.22 -2.06 16 12 C -0.09 -1.98 9.95 22.05 0.22 -1.76 16 13 C -0.09 -2.39 9.95 22.04 0.22 -2.17 16 14 C -0.11 -4.22 9.98 22.34 0.22 -4.00 16 15 C 0.04 1.99 6.59 40.24 0.27 2.26 16 16 N -0.46 -24.87 7.94 -185.00 -1.47 -26.34 16 17 C 0.32 15.60 7.46 133.93 1.00 16.60 16 18 N -0.66 -33.08 5.35 -311.44 -1.67 -34.74 16 19 C 0.52 31.63 7.70 86.30 0.66 32.30 16 20 O -0.56 -39.07 13.26 -4.46 -0.06 -39.13 16 21 C -0.56 -32.45 9.53 24.78 0.24 -32.22 16 22 H 0.09 4.79 7.85 -2.91 -0.02 4.77 16 23 C 0.03 1.63 5.50 85.33 0.47 2.10 16 24 N -0.81 -50.33 11.82 21.85 0.26 -50.08 16 25 Si 1.00 41.09 29.56 68.60 2.03 43.11 16 26 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 27 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 28 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 29 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.06 1.16 8.12 -2.39 -0.02 1.14 16 32 H 0.18 1.72 8.03 -2.91 -0.02 1.70 16 33 H 0.09 1.73 7.51 -2.39 -0.02 1.71 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.12 1.11 8.02 -2.39 -0.02 1.09 16 36 H 0.42 13.47 5.90 -92.71 -0.55 12.93 16 37 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 38 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 39 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 40 H 0.11 4.62 8.06 -2.91 -0.02 4.59 16 41 H 0.41 17.42 6.82 -92.71 -0.63 16.79 16 42 H 0.28 15.61 8.29 -92.71 -0.77 14.85 16 Total: -1.00 -92.24 365.79 3.52 -88.72 By element: Atomic # 1 Polarization: 43.05 SS G_CDS: -0.08 Total: 42.97 kcal Atomic # 6 Polarization: 26.74 SS G_CDS: 6.79 Total: 33.53 kcal Atomic # 7 Polarization: -145.49 SS G_CDS: -5.10 Total: -150.59 kcal Atomic # 8 Polarization: -57.63 SS G_CDS: -0.12 Total: -57.74 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.11 kcal Total: -92.24 3.52 -88.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163737321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.118 kcal (2) G-P(sol) polarization free energy of solvation -92.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds