Wall clock time and date at job start Sat Apr 11 2020 05:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47119 * 2 1 4 4 C 1.53005 * 109.47195 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47420 * 179.97438 * 4 3 2 6 6 C 1.36932 * 120.00374 * 275.00250 * 5 4 3 7 7 H 1.08002 * 120.00279 * 146.63325 * 6 5 4 8 8 C 1.38814 * 119.99950 * 326.63807 * 6 5 4 9 9 N 1.31615 * 119.99909 * 335.92067 * 8 6 5 10 10 Si 1.86796 * 119.99956 * 155.92634 * 8 6 5 11 11 H 1.48495 * 109.47381 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47201 * 119.99693 * 10 8 6 13 13 H 1.48505 * 109.47223 * 239.99512 * 10 8 6 14 14 S 1.65606 * 119.99595 * 94.99927 * 5 4 3 15 15 O 1.42101 * 106.40428 * 341.70414 * 14 5 4 16 16 O 1.42100 * 106.39893 * 208.78258 * 14 5 4 17 17 C 1.76199 * 107.21598 * 95.24597 * 14 5 4 18 18 C 1.38370 * 119.85291 * 270.25412 * 17 14 5 19 19 C 1.37952 * 120.14179 * 180.25841 * 18 17 14 20 20 C 1.39574 * 119.85755 * 359.48587 * 19 18 17 21 21 C 1.47847 * 120.14845 * 180.28039 * 20 19 18 22 22 O 1.21554 * 119.99943 * 359.97438 * 21 20 19 23 23 N 1.34775 * 120.00280 * 180.02562 * 21 20 19 24 24 C 1.46495 * 119.99969 * 179.97438 * 23 21 20 25 25 C 1.39582 * 119.71025 * 0.25737 * 20 19 18 26 26 C 1.37956 * 119.84847 * 359.97438 * 25 20 19 27 27 H 1.09001 * 109.46757 * 299.99897 * 1 2 3 28 28 H 1.09006 * 109.47567 * 59.99332 * 1 2 3 29 29 H 1.09000 * 109.47638 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46878 * 240.00821 * 2 1 3 31 31 H 1.08997 * 109.47482 * 120.00485 * 2 1 3 32 32 H 1.09000 * 109.46948 * 60.00864 * 3 2 1 33 33 H 1.08999 * 109.47570 * 300.00083 * 3 2 1 34 34 H 1.09001 * 109.46871 * 59.99987 * 4 3 2 35 35 H 1.08997 * 109.47292 * 300.00415 * 4 3 2 36 36 H 0.96997 * 120.00118 * 179.97438 * 9 8 6 37 37 H 1.07994 * 119.92580 * 0.02562 * 18 17 14 38 38 H 1.08001 * 120.06878 * 179.76908 * 19 18 17 39 39 H 0.97002 * 119.99805 * 359.97438 * 23 21 20 40 40 H 1.08995 * 109.46991 * 60.00372 * 24 23 21 41 41 H 1.09002 * 109.46863 * 180.02562 * 24 23 21 42 42 H 1.08998 * 109.47017 * 299.99588 * 24 23 21 43 43 H 1.07998 * 120.07588 * 180.02562 * 25 20 19 44 44 H 1.08005 * 119.92420 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 -0.0013 6 6 4.1887 3.5034 -1.1828 7 1 4.0147 4.5688 -1.2150 8 6 4.5442 2.8230 -2.3394 9 7 5.2016 1.6856 -2.2580 10 14 4.0899 3.5217 -4.0111 11 1 3.3584 4.8013 -3.8306 12 1 5.3253 3.7642 -4.7986 13 1 3.2245 2.5548 -4.7332 14 16 4.4528 3.5630 1.4271 15 8 3.8263 2.8089 2.4557 16 8 4.2276 4.9528 1.2351 17 6 6.1892 3.3670 1.6537 18 6 6.6756 2.2584 2.3237 19 6 8.0336 2.1016 2.5091 20 6 8.9181 3.0589 2.0098 21 6 10.3751 2.8942 2.1995 22 8 10.8050 1.9237 2.7917 23 7 11.2265 3.8207 1.7166 24 6 12.6701 3.6577 1.9051 25 6 8.4212 4.1723 1.3303 26 6 7.0606 4.3194 1.1559 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9564 -0.8899 34 1 3.9329 0.9288 -0.8909 35 1 3.9337 0.9285 0.8890 36 1 5.4497 1.2100 -3.0661 37 1 5.9904 1.5161 2.7055 38 1 8.4117 1.2377 3.0355 39 1 10.8834 4.5954 1.2443 40 1 12.9956 2.7302 1.4341 41 1 13.1931 4.4993 1.4507 42 1 12.8957 3.6229 2.9709 43 1 9.1003 4.9164 0.9411 44 1 6.6747 5.1806 0.6306 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191605138.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:44 Heat of formation + Delta-G solvation = -90.802201 kcal Electronic energy + Delta-G solvation = -27930.253903 eV Core-core repulsion = 23974.440847 eV Total energy + Delta-G solvation = -3955.813056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.01055 -37.93061 -36.57961 -35.87245 -34.75320 -34.46169 -33.95005 -31.67775 -31.19081 -30.62287 -28.24946 -27.01546 -24.92091 -23.51715 -22.42347 -22.21183 -20.53323 -20.43910 -18.60032 -18.25552 -17.43773 -16.60231 -16.21301 -16.06783 -15.25888 -14.98924 -14.78208 -14.76507 -14.63658 -14.06266 -13.91881 -13.51047 -13.32127 -13.18531 -13.11719 -12.54258 -12.47867 -12.43259 -12.31816 -12.16618 -11.70141 -11.58578 -11.45742 -10.99159 -10.93404 -10.82469 -10.68711 -10.66292 -10.47589 -10.34641 -10.19202 -10.10370 -9.81088 -9.69822 -9.35320 -9.30987 -8.83462 -8.65079 -7.97706 -6.72226 -4.24963 0.84590 1.71627 1.72826 2.89670 2.99913 3.09318 3.12286 3.16117 3.86032 4.02150 4.40022 4.60639 4.72182 4.94093 5.00551 5.09353 5.20574 5.32391 5.47449 5.48332 5.52394 5.59558 5.63831 5.70985 5.94962 5.98863 6.01666 6.23085 6.24454 6.26720 6.31163 6.34287 6.38536 6.42917 6.51951 6.63318 6.71801 6.75704 6.84187 7.08515 7.19464 7.21545 7.36748 7.47380 8.14161 8.15086 8.54005 9.02593 10.20794 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.003797 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.196896 B = 7372.728009 C = 8306.578423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.129 4.129 4 C 0.121 3.879 5 N -0.795 5.795 6 C -0.238 4.238 7 H 0.113 0.887 8 C 0.037 3.963 9 N -0.814 5.814 10 Si 0.922 3.078 11 H -0.259 1.259 12 H -0.277 1.277 13 H -0.274 1.274 14 S 2.516 3.484 15 O -1.002 7.002 16 O -0.984 6.984 17 C -0.619 4.619 18 C -0.041 4.041 19 C -0.084 4.084 20 C -0.116 4.116 21 C 0.561 3.439 22 O -0.539 6.539 23 N -0.734 5.734 24 C 0.089 3.911 25 C -0.112 4.112 26 C -0.032 4.032 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.055 0.945 36 H 0.277 0.723 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.403 0.597 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.123 0.877 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.950 1.116 0.249 5.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.169 4.169 4 C -0.005 4.005 5 N -0.617 5.617 6 C -0.387 4.387 7 H 0.130 0.870 8 C -0.177 4.177 9 N -0.452 5.452 10 Si 0.746 3.254 11 H -0.183 1.183 12 H -0.203 1.203 13 H -0.200 1.200 14 S 2.617 3.383 15 O -0.992 6.992 16 O -0.974 6.974 17 C -0.697 4.697 18 C -0.060 4.060 19 C -0.104 4.104 20 C -0.120 4.120 21 C 0.349 3.651 22 O -0.417 6.417 23 N -0.387 5.387 24 C -0.055 4.055 25 C -0.131 4.131 26 C -0.051 4.051 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.126 0.874 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.238 0.762 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.140 0.860 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.929 0.723 1.500 5.202 hybrid contribution 0.782 0.394 -1.136 1.434 sum 5.710 1.117 0.365 5.830 Atomic orbital electron populations 1.21762 0.96545 1.00730 1.01641 1.21440 0.95139 0.97607 1.01684 1.21947 0.97083 0.95720 1.02147 1.21442 0.92187 0.83025 1.03861 1.53918 1.64776 1.22992 1.20034 1.19952 1.39761 0.95739 0.83271 0.86954 1.25827 0.94185 0.96513 1.01209 1.69988 1.29306 1.15091 1.30765 0.85922 0.78911 0.79958 0.80570 1.18295 1.20301 1.19963 1.12027 0.74881 0.75273 0.76074 1.93338 1.74992 1.71642 1.59180 1.93350 1.84803 1.33054 1.86209 1.32662 1.32211 1.00475 1.04316 1.20845 0.95039 0.95774 0.94307 1.21271 0.92926 0.98052 0.98134 1.19908 0.92120 0.97454 1.02471 1.18446 0.86435 0.82169 0.78055 1.90744 1.79025 1.30250 1.41650 1.45728 1.07277 1.26260 1.59411 1.21532 0.79787 1.02185 1.02015 1.21283 0.96220 0.96725 0.98900 1.20812 0.92197 0.97419 0.94632 0.92940 0.92948 0.93425 0.92147 0.92286 0.92502 0.91491 0.87432 0.92639 0.91236 0.84609 0.84878 0.76177 0.92137 0.90603 0.92205 0.85950 0.84287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.12 -1.86 5.93 -26.73 -0.16 -2.02 16 3 C -0.13 -2.41 5.51 -26.73 -0.15 -2.56 16 4 C 0.12 2.54 4.97 -4.04 -0.02 2.52 16 5 N -0.80 -18.00 2.85 -59.91 -0.17 -18.17 16 6 C -0.24 -5.47 9.17 -15.06 -0.14 -5.61 16 7 H 0.11 2.60 7.45 -52.49 -0.39 2.20 16 8 C 0.04 0.82 4.97 -17.43 -0.09 0.74 16 9 N -0.81 -18.52 11.29 55.49 0.63 -17.89 16 10 Si 0.92 17.29 29.62 -169.99 -5.03 12.26 16 11 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 12 H -0.28 -5.22 7.11 56.52 0.40 -4.81 16 13 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 14 S 2.52 57.62 5.61 -107.50 -0.60 57.01 16 15 O -1.00 -24.11 16.07 -57.17 -0.92 -25.03 16 16 O -0.98 -24.41 16.26 -57.17 -0.93 -25.34 16 17 C -0.62 -12.92 5.98 -39.49 -0.24 -13.16 16 18 C -0.04 -0.79 9.50 -39.64 -0.38 -1.17 16 19 C -0.08 -1.53 9.60 -39.19 -0.38 -1.90 16 20 C -0.12 -1.98 5.87 -104.97 -0.62 -2.60 16 21 C 0.56 8.95 7.77 -12.33 -0.10 8.86 16 22 O -0.54 -10.15 16.35 5.32 0.09 -10.06 16 23 N -0.73 -8.59 5.66 -68.05 -0.39 -8.97 16 24 C 0.09 0.82 10.70 59.84 0.64 1.46 16 25 C -0.11 -1.79 9.54 -39.18 -0.37 -2.17 16 26 C -0.03 -0.60 9.50 -39.64 -0.38 -0.98 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.11 2.34 5.31 -51.93 -0.28 2.07 16 35 H 0.06 1.13 7.46 -51.93 -0.39 0.74 16 36 H 0.28 5.89 8.31 -40.82 -0.34 5.55 16 37 H 0.14 2.50 7.61 -52.49 -0.40 2.11 16 38 H 0.13 2.24 7.65 -52.49 -0.40 1.84 16 39 H 0.40 3.68 6.86 -40.82 -0.28 3.40 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.12 1.43 6.41 -52.49 -0.34 1.10 16 44 H 0.14 2.52 7.60 -52.48 -0.40 2.12 16 LS Contribution 380.06 15.07 5.73 5.73 Total: -1.00 -30.23 380.06 -9.83 -40.06 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -6.23 Total: 10.60 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: -1.99 Total: -20.19 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.07 Total: -45.04 kcal Atomic # 8 Polarization: -58.67 SS G_CDS: -1.76 Total: -60.43 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.26 kcal Atomic # 16 Polarization: 57.62 SS G_CDS: -0.60 Total: 57.01 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.23 -9.83 -40.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191605138.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.743 kcal (2) G-P(sol) polarization free energy of solvation -30.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds