Wall clock time and date at job start Sat Apr 11 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00123 * 2 1 4 4 H 1.08999 * 109.46788 * 30.00489 * 3 2 1 5 5 C 1.50696 * 109.47275 * 149.99942 * 3 2 1 6 6 O 1.20833 * 119.99595 * 5.00719 * 5 3 2 7 7 O 1.34224 * 120.00302 * 185.00191 * 5 3 2 8 8 C 1.45206 * 117.00077 * 180.02562 * 7 5 3 9 9 H 1.09001 * 109.46893 * 30.00273 * 8 7 5 10 10 C 1.50701 * 109.46873 * 149.99983 * 8 7 5 11 11 H 1.07995 * 120.00385 * 0.02562 * 10 8 7 12 12 C 1.37882 * 119.99927 * 180.02562 * 10 8 7 13 13 N 1.31512 * 119.99626 * 0.02562 * 12 10 8 14 14 Si 1.86793 * 120.00223 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.47245 * 59.99925 * 14 12 10 16 16 H 1.48496 * 109.47286 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47055 * 300.00315 * 14 12 10 18 18 C 1.50699 * 109.46987 * 269.99933 * 8 7 5 19 19 C 1.34514 * 125.78686 * 145.00170 * 18 8 7 20 20 C 1.41381 * 106.84036 * 179.97438 * 19 18 8 21 21 C 1.34514 * 106.84168 * 0.02562 * 20 19 18 22 22 O 1.34299 * 125.79130 * 324.69163 * 18 8 7 23 23 C 1.50693 * 109.47454 * 270.00585 * 3 2 1 24 24 O 1.20829 * 119.99929 * 354.99971 * 23 3 2 25 25 O 1.34232 * 120.00409 * 174.99840 * 23 3 2 26 26 C 1.45190 * 117.00243 * 179.97438 * 25 23 3 27 27 C 1.53002 * 109.47355 * 60.00133 * 26 25 23 28 28 C 1.53003 * 109.47208 * 180.02562 * 26 25 23 29 29 C 1.52993 * 109.47557 * 300.00012 * 26 25 23 30 30 H 1.09002 * 109.47070 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46945 * 299.99300 * 1 2 3 32 32 H 1.08999 * 109.47201 * 59.99841 * 1 2 3 33 33 H 0.97006 * 119.99899 * 180.02562 * 13 12 10 34 34 H 1.08002 * 126.57720 * 0.03329 * 19 18 8 35 35 H 1.08000 * 126.57830 * 179.97438 * 20 19 18 36 36 H 1.07998 * 125.78878 * 180.02562 * 21 20 19 37 37 H 1.09003 * 109.46743 * 59.99673 * 27 26 25 38 38 H 1.08996 * 109.47715 * 179.97438 * 27 26 25 39 39 H 1.09000 * 109.47040 * 300.00229 * 27 26 25 40 40 H 1.08994 * 109.47450 * 59.99805 * 28 26 25 41 41 H 1.08996 * 109.47412 * 180.02562 * 28 26 25 42 42 H 1.09007 * 109.46800 * 299.99928 * 28 26 25 43 43 H 1.09000 * 109.47097 * 60.00184 * 29 26 25 44 44 H 1.08998 * 109.47897 * 179.97438 * 29 26 25 45 45 H 1.09002 * 109.47471 * 300.00111 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 3.3386 1.2639 0.7104 6 8 3.7880 0.2083 1.0898 7 8 4.0226 2.3993 0.9215 8 6 5.2951 2.2837 1.6115 9 1 5.7408 1.3136 1.3915 10 6 6.2200 3.3787 1.1461 11 1 5.8850 4.0905 0.4063 12 6 7.4941 3.4718 1.6650 13 7 7.9022 2.6047 2.5656 14 14 8.6404 4.8294 1.0888 15 1 8.0331 6.1509 1.3894 16 1 9.9417 4.7112 1.7942 17 1 8.8573 4.7060 -0.3751 18 6 5.0743 2.4101 3.0969 19 6 5.7577 1.7545 4.0522 20 6 5.2263 2.1706 5.2945 21 6 4.2496 3.0551 5.0241 22 8 4.1660 3.2006 3.6915 23 6 2.2145 1.7644 -1.4207 24 8 1.9799 1.0136 -2.3378 25 8 2.6570 3.0075 -1.6675 26 6 2.8310 3.3810 -3.0597 27 6 1.4907 3.2695 -3.7891 28 6 3.3384 4.8221 -3.1415 29 6 3.8480 2.4449 -3.7156 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 8.7984 2.6704 2.9310 34 1 6.5592 1.0469 3.8996 35 1 5.5431 1.8409 6.2730 36 1 3.6398 3.5656 5.7547 37 1 0.7662 3.9364 -3.3217 38 1 1.6212 3.5503 -4.8341 39 1 1.1297 2.2427 -3.7308 40 1 4.2933 4.9012 -2.6220 41 1 3.4686 5.1027 -4.1866 42 1 2.6141 5.4894 -2.6741 43 1 3.4870 1.4181 -3.6574 44 1 3.9783 2.7250 -4.7609 45 1 4.8029 2.5243 -3.1961 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263660360.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:10 Heat of formation + Delta-G solvation = -186.819847 kcal Electronic energy + Delta-G solvation = -31662.770165 eV Core-core repulsion = 27227.747850 eV Total energy + Delta-G solvation = -4435.022315 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.38625 -41.03413 -39.65942 -38.11404 -36.56583 -35.74790 -34.08829 -33.35270 -31.70965 -30.43936 -29.29771 -27.42431 -27.32224 -26.75378 -26.37506 -23.51816 -22.54666 -21.06709 -20.49647 -19.69333 -19.33853 -17.89649 -17.58839 -17.21779 -16.68741 -16.51874 -16.05776 -15.82096 -15.38544 -15.09779 -14.89321 -14.78363 -14.51228 -14.21054 -14.02349 -13.58416 -13.45509 -12.81529 -12.64555 -12.43946 -12.16594 -12.06287 -11.92950 -11.85341 -11.83195 -11.65744 -11.59411 -11.44713 -11.29638 -11.27835 -11.14703 -10.97684 -10.57988 -10.42909 -10.32890 -10.21658 -10.01970 -9.52743 -9.46610 -8.85259 -8.65724 -7.27541 -6.23570 -4.42544 1.88754 2.36052 2.62611 2.88094 3.09366 3.21677 3.25491 3.28925 3.84442 3.96375 4.15217 4.23792 4.50489 4.68657 4.72638 4.78737 4.93169 5.02798 5.15679 5.20755 5.28405 5.45459 5.52693 5.55331 5.66748 5.75447 5.81131 5.84543 5.88656 6.04350 6.05254 6.22588 6.33041 6.34852 6.52152 6.59819 6.66440 6.96306 7.10411 7.21270 7.29958 7.65404 7.69742 7.77072 7.80628 8.25595 8.42082 8.71494 9.23884 10.74039 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.010010 B = 0.004922 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.624344 B = 5687.849891 C = 7653.801765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.328 6.328 3 C 0.103 3.897 4 H 0.132 0.868 5 C 0.462 3.538 6 O -0.477 6.477 7 O -0.330 6.330 8 C 0.301 3.699 9 H 0.079 0.921 10 C -0.527 4.527 11 H 0.080 0.920 12 C 0.070 3.930 13 N -0.868 5.868 14 Si 0.915 3.085 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.272 1.272 18 C 0.017 3.983 19 C -0.172 4.172 20 C -0.218 4.218 21 C -0.088 4.088 22 O -0.178 6.178 23 C 0.454 3.546 24 O -0.483 6.483 25 O -0.326 6.326 26 C 0.117 3.883 27 C -0.182 4.182 28 C -0.141 4.141 29 C -0.186 4.186 30 H 0.100 0.900 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.270 0.730 34 H 0.146 0.854 35 H 0.131 0.869 36 H 0.184 0.816 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.607 1.909 -6.450 14.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.245 6.245 3 C 0.042 3.958 4 H 0.150 0.850 5 C 0.301 3.699 6 O -0.364 6.364 7 O -0.246 6.246 8 C 0.249 3.751 9 H 0.097 0.903 10 C -0.564 4.564 11 H 0.098 0.902 12 C -0.136 4.136 13 N -0.502 5.502 14 Si 0.741 3.259 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.197 1.197 18 C -0.034 4.034 19 C -0.192 4.192 20 C -0.238 4.238 21 C -0.156 4.156 22 O -0.075 6.075 23 C 0.295 3.705 24 O -0.370 6.370 25 O -0.243 6.243 26 C 0.081 3.919 27 C -0.239 4.239 28 C -0.198 4.198 29 C -0.243 4.243 30 H 0.118 0.882 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.164 0.836 35 H 0.149 0.851 36 H 0.201 0.799 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.393 1.362 -6.660 14.135 hybrid contribution 0.719 0.767 0.182 1.067 sum -11.674 2.130 -6.478 13.520 Atomic orbital electron populations 1.23063 0.79505 1.04139 1.00516 1.88158 1.20693 1.21738 1.93905 1.20880 0.95483 0.88825 0.90628 0.85033 1.22183 0.85511 0.84011 0.78175 1.90683 1.67206 1.31611 1.46858 1.86591 1.35801 1.32474 1.69769 1.19288 0.75904 1.01072 0.78877 0.90332 1.20830 0.95861 1.14383 1.25370 0.90205 1.24933 0.97612 0.96733 0.94334 1.70016 1.18968 1.34845 1.26374 0.86278 0.79185 0.81450 0.78981 1.19808 1.20929 1.19706 1.23534 0.91281 0.91906 0.96686 1.21307 1.02531 1.05145 0.90179 1.21724 1.00255 1.02818 0.98987 1.23607 1.04130 1.04761 0.83080 1.83981 1.50297 1.54480 1.18744 1.23496 0.74382 0.80812 0.91794 1.90581 1.46251 1.54814 1.45321 1.86678 1.76097 1.30599 1.30910 1.22238 0.95951 0.96132 0.77571 1.22499 0.96368 1.04269 1.00767 1.21851 1.02959 0.92497 1.02537 1.22502 0.99445 1.01345 1.00977 0.88192 0.93068 0.93307 0.92033 0.83590 0.85125 0.79867 0.92019 0.91036 0.90058 0.90554 0.90568 0.91468 0.90074 0.91154 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.81 101.05 1.09 1.35 16 2 O -0.33 -5.35 9.42 -64.74 -0.61 -5.96 16 3 C 0.10 1.72 3.15 -29.04 -0.09 1.63 16 4 H 0.13 1.70 7.79 -51.93 -0.40 1.29 16 5 C 0.46 9.88 7.24 36.00 0.26 10.14 16 6 O -0.48 -11.56 15.73 -25.47 -0.40 -11.96 16 7 O -0.33 -7.69 9.63 -42.09 -0.41 -8.09 16 8 C 0.30 7.85 2.41 -29.03 -0.07 7.78 16 9 H 0.08 2.21 7.16 -51.93 -0.37 1.83 16 10 C -0.53 -14.17 8.89 -34.44 -0.31 -14.48 16 11 H 0.08 2.10 7.81 -52.49 -0.41 1.69 16 12 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 13 N -0.87 -23.45 10.48 55.43 0.58 -22.87 16 14 Si 0.91 20.47 29.54 -169.99 -5.02 15.45 16 15 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 17 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 18 C 0.02 0.43 5.67 -35.62 -0.20 0.23 16 19 C -0.17 -4.23 9.04 -39.70 -0.36 -4.59 16 20 C -0.22 -4.59 10.91 -39.70 -0.43 -5.03 16 21 C -0.09 -1.77 12.09 29.42 0.36 -1.42 16 22 O -0.18 -4.25 10.63 2.20 0.02 -4.23 16 23 C 0.45 7.56 6.54 36.00 0.24 7.79 16 24 O -0.48 -8.31 12.01 -25.47 -0.31 -8.62 16 25 O -0.33 -5.30 9.68 -39.40 -0.38 -5.68 16 26 C 0.12 1.56 1.13 -90.62 -0.10 1.46 16 27 C -0.18 -2.03 8.37 37.16 0.31 -1.72 16 28 C -0.14 -1.61 8.85 37.16 0.33 -1.29 16 29 C -0.19 -2.54 8.37 37.15 0.31 -2.23 16 30 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.45 8.08 -51.93 -0.42 0.03 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.15 3.71 7.49 -52.49 -0.39 3.32 16 35 H 0.13 2.32 8.06 -52.49 -0.42 1.90 16 36 H 0.18 2.75 8.06 -52.49 -0.42 2.33 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 1.03 5.89 -51.93 -0.31 0.73 16 40 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 1.25 5.89 -51.93 -0.31 0.94 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 385.02 15.07 5.80 5.80 Total: -1.00 -32.26 385.02 -5.88 -38.14 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.40 Total: 6.63 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 1.24 Total: 1.38 kcal Atomic # 7 Polarization: -23.45 SS G_CDS: 0.58 Total: -22.87 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -2.08 Total: -44.53 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.26 -5.88 -38.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263660360.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.680 kcal (2) G-P(sol) polarization free energy of solvation -32.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds