Wall clock time and date at job start Sat Apr 11 2020 05:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00123 * 2 1 4 4 H 1.08999 * 109.46788 * 30.00489 * 3 2 1 5 5 C 1.50696 * 109.47275 * 149.99942 * 3 2 1 6 6 O 1.20833 * 119.99595 * 5.00719 * 5 3 2 7 7 O 1.34224 * 120.00302 * 185.00191 * 5 3 2 8 8 C 1.45206 * 117.00077 * 180.02562 * 7 5 3 9 9 H 1.09001 * 109.46893 * 30.00273 * 8 7 5 10 10 C 1.50701 * 109.46873 * 149.99983 * 8 7 5 11 11 H 1.07995 * 120.00385 * 0.02562 * 10 8 7 12 12 C 1.37882 * 119.99927 * 180.02562 * 10 8 7 13 13 N 1.31512 * 119.99626 * 0.02562 * 12 10 8 14 14 Si 1.86793 * 120.00223 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.47245 * 59.99925 * 14 12 10 16 16 H 1.48496 * 109.47286 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47055 * 300.00315 * 14 12 10 18 18 C 1.50699 * 109.46987 * 269.99933 * 8 7 5 19 19 C 1.34514 * 125.78686 * 145.00170 * 18 8 7 20 20 C 1.41381 * 106.84036 * 179.97438 * 19 18 8 21 21 C 1.34514 * 106.84168 * 0.02562 * 20 19 18 22 22 O 1.34299 * 125.79130 * 324.69163 * 18 8 7 23 23 C 1.50693 * 109.47454 * 270.00585 * 3 2 1 24 24 O 1.20829 * 119.99929 * 354.99971 * 23 3 2 25 25 O 1.34232 * 120.00409 * 174.99840 * 23 3 2 26 26 C 1.45190 * 117.00243 * 179.97438 * 25 23 3 27 27 C 1.53002 * 109.47355 * 60.00133 * 26 25 23 28 28 C 1.53003 * 109.47208 * 180.02562 * 26 25 23 29 29 C 1.52993 * 109.47557 * 300.00012 * 26 25 23 30 30 H 1.09002 * 109.47070 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46945 * 299.99300 * 1 2 3 32 32 H 1.08999 * 109.47201 * 59.99841 * 1 2 3 33 33 H 0.97006 * 119.99899 * 180.02562 * 13 12 10 34 34 H 1.08002 * 126.57720 * 0.03329 * 19 18 8 35 35 H 1.08000 * 126.57830 * 179.97438 * 20 19 18 36 36 H 1.07998 * 125.78878 * 180.02562 * 21 20 19 37 37 H 1.09003 * 109.46743 * 59.99673 * 27 26 25 38 38 H 1.08996 * 109.47715 * 179.97438 * 27 26 25 39 39 H 1.09000 * 109.47040 * 300.00229 * 27 26 25 40 40 H 1.08994 * 109.47450 * 59.99805 * 28 26 25 41 41 H 1.08996 * 109.47412 * 180.02562 * 28 26 25 42 42 H 1.09007 * 109.46800 * 299.99928 * 28 26 25 43 43 H 1.09000 * 109.47097 * 60.00184 * 29 26 25 44 44 H 1.08998 * 109.47897 * 179.97438 * 29 26 25 45 45 H 1.09002 * 109.47471 * 300.00111 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 3.3386 1.2639 0.7104 6 8 3.7880 0.2083 1.0898 7 8 4.0226 2.3993 0.9215 8 6 5.2951 2.2837 1.6115 9 1 5.7408 1.3136 1.3915 10 6 6.2200 3.3787 1.1461 11 1 5.8850 4.0905 0.4063 12 6 7.4941 3.4718 1.6650 13 7 7.9022 2.6047 2.5656 14 14 8.6404 4.8294 1.0888 15 1 8.0331 6.1509 1.3894 16 1 9.9417 4.7112 1.7942 17 1 8.8573 4.7060 -0.3751 18 6 5.0743 2.4101 3.0969 19 6 5.7577 1.7545 4.0522 20 6 5.2263 2.1706 5.2945 21 6 4.2496 3.0551 5.0241 22 8 4.1660 3.2006 3.6915 23 6 2.2145 1.7644 -1.4207 24 8 1.9799 1.0136 -2.3378 25 8 2.6570 3.0075 -1.6675 26 6 2.8310 3.3810 -3.0597 27 6 1.4907 3.2695 -3.7891 28 6 3.3384 4.8221 -3.1415 29 6 3.8480 2.4449 -3.7156 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 8.7984 2.6704 2.9310 34 1 6.5592 1.0469 3.8996 35 1 5.5431 1.8409 6.2730 36 1 3.6398 3.5656 5.7547 37 1 0.7662 3.9364 -3.3217 38 1 1.6212 3.5503 -4.8341 39 1 1.1297 2.2427 -3.7308 40 1 4.2933 4.9012 -2.6220 41 1 3.4686 5.1027 -4.1866 42 1 2.6141 5.4894 -2.6741 43 1 3.4870 1.4181 -3.6574 44 1 3.9783 2.7250 -4.7609 45 1 4.8029 2.5243 -3.1961 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263660360.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:09 Heat of formation + Delta-G solvation = -205.046584 kcal Electronic energy + Delta-G solvation = -31663.560536 eV Core-core repulsion = 27227.747850 eV Total energy + Delta-G solvation = -4435.812686 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.17222 -42.35531 -41.28651 -39.38602 -37.83377 -37.51676 -35.39088 -35.13885 -33.50846 -32.05036 -30.88574 -28.57270 -28.38917 -28.28163 -27.42275 -25.32446 -24.01620 -22.61845 -22.22903 -21.23832 -20.82727 -19.46742 -18.99338 -18.83809 -18.35285 -17.94293 -17.52150 -17.28286 -16.90524 -16.63156 -16.53254 -16.30956 -15.97087 -15.39756 -15.29546 -14.91962 -14.58902 -14.55239 -13.98881 -13.90933 -13.50515 -13.48977 -13.38970 -13.19000 -13.11098 -13.01580 -12.95258 -12.87447 -12.79387 -12.62735 -12.50817 -12.35681 -12.23537 -12.12520 -11.71774 -11.60335 -11.43452 -11.41983 -10.80520 -10.77673 -10.48749 -9.10144 -8.22319 -6.51813 0.46743 0.94616 1.09428 1.26419 1.41501 1.45055 1.52003 1.67612 2.08378 2.34527 2.41606 2.67486 3.02007 3.32945 3.46206 3.55083 3.71928 3.79544 3.94900 4.20825 4.36048 4.42348 4.44352 4.54484 4.57039 4.60116 4.60482 4.75611 4.76863 4.79475 4.86506 4.88349 5.11220 5.16058 5.24582 5.25982 5.27125 5.40300 5.41821 5.48069 5.59708 5.63876 5.76787 5.92873 6.44918 6.49910 6.56729 6.76551 7.18672 8.73297 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.010010 B = 0.004922 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.624344 B = 5687.849891 C = 7653.801765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.357 6.357 3 C 0.112 3.888 4 H 0.172 0.828 5 C 0.457 3.543 6 O -0.515 6.515 7 O -0.333 6.333 8 C 0.305 3.695 9 H 0.040 0.960 10 C -0.550 4.550 11 H 0.078 0.922 12 C 0.025 3.975 13 N -0.890 5.890 14 Si 0.979 3.021 15 H -0.267 1.267 16 H -0.278 1.278 17 H -0.263 1.263 18 C -0.013 4.013 19 C -0.187 4.187 20 C -0.230 4.230 21 C -0.066 4.066 22 O -0.192 6.192 23 C 0.456 3.544 24 O -0.491 6.491 25 O -0.340 6.340 26 C 0.103 3.897 27 C -0.173 4.173 28 C -0.138 4.138 29 C -0.184 4.184 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.271 0.729 34 H 0.125 0.875 35 H 0.165 0.835 36 H 0.242 0.758 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.107 0.893 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.101 0.899 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.259 4.045 -6.430 16.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.275 6.275 3 C 0.051 3.949 4 H 0.188 0.812 5 C 0.298 3.702 6 O -0.404 6.404 7 O -0.248 6.248 8 C 0.251 3.749 9 H 0.057 0.943 10 C -0.587 4.587 11 H 0.096 0.904 12 C -0.178 4.178 13 N -0.525 5.525 14 Si 0.802 3.198 15 H -0.192 1.192 16 H -0.203 1.203 17 H -0.188 1.188 18 C -0.063 4.063 19 C -0.207 4.207 20 C -0.249 4.249 21 C -0.133 4.133 22 O -0.090 6.090 23 C 0.297 3.703 24 O -0.379 6.379 25 O -0.257 6.257 26 C 0.068 3.932 27 C -0.230 4.230 28 C -0.195 4.195 29 C -0.241 4.241 30 H 0.135 0.865 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.143 0.857 35 H 0.182 0.818 36 H 0.258 0.742 37 H 0.092 0.908 38 H 0.115 0.885 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.125 0.875 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.119 0.881 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.073 3.497 -6.653 15.954 hybrid contribution 1.161 0.029 0.205 1.179 sum -12.912 3.526 -6.448 14.857 Atomic orbital electron populations 1.23407 0.76562 1.05887 1.02184 1.88128 1.23836 1.21563 1.94005 1.20866 0.93214 0.90226 0.90556 0.81157 1.23146 0.86682 0.82869 0.77470 1.90652 1.68493 1.32635 1.48571 1.86572 1.35022 1.33568 1.69672 1.18856 0.76940 0.98906 0.80183 0.94256 1.21065 0.96918 1.14726 1.26000 0.90434 1.25803 0.98816 0.98928 0.94244 1.70157 1.19210 1.36088 1.27026 0.85291 0.77092 0.78536 0.78915 1.19161 1.20316 1.18764 1.23258 0.92905 0.93713 0.96452 1.21364 1.02145 1.04954 0.92220 1.22060 1.00557 1.03288 0.99008 1.24699 1.03269 1.03163 0.82134 1.83954 1.49992 1.54372 1.20654 1.23436 0.74298 0.80988 0.91580 1.90576 1.46655 1.55102 1.45542 1.86670 1.75774 1.30229 1.33039 1.22661 0.97256 0.96930 0.76397 1.22434 0.94984 1.03570 1.02056 1.21890 1.01910 0.91296 1.04375 1.22489 0.98375 1.00487 1.02725 0.86498 0.90685 0.92279 0.91994 0.85718 0.81785 0.74211 0.90756 0.88502 0.91758 0.92721 0.87495 0.90505 0.92168 0.88065 0.93397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.29 10.81 113.37 1.23 1.51 16 2 O -0.36 -11.61 9.42 -120.77 -1.14 -12.75 16 3 C 0.11 3.75 3.15 29.10 0.09 3.84 16 4 H 0.17 4.16 7.79 -2.39 -0.02 4.14 16 5 C 0.46 20.40 7.24 71.23 0.52 20.91 16 6 O -0.52 -26.50 15.73 28.36 0.45 -26.05 16 7 O -0.33 -16.19 9.63 -48.63 -0.47 -16.66 16 8 C 0.30 16.77 2.41 29.10 0.07 16.84 16 9 H 0.04 2.43 7.16 -2.39 -0.02 2.41 16 10 C -0.55 -30.76 8.89 25.60 0.23 -30.53 16 11 H 0.08 4.23 7.81 -2.91 -0.02 4.20 16 12 C 0.03 1.37 5.30 84.66 0.45 1.82 16 13 N -0.89 -49.78 10.48 21.45 0.22 -49.55 16 14 Si 0.98 42.29 29.54 68.60 2.03 44.32 16 15 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 16 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 18 C -0.01 -0.68 5.67 24.83 0.14 -0.54 16 19 C -0.19 -9.47 9.04 22.19 0.20 -9.27 16 20 C -0.23 -9.35 10.91 22.19 0.24 -9.11 16 21 C -0.07 -2.48 12.09 66.97 0.81 -1.67 16 22 O -0.19 -9.08 10.63 0.87 0.01 -9.08 16 23 C 0.46 15.25 6.54 71.23 0.47 15.72 16 24 O -0.49 -17.04 12.01 28.38 0.34 -16.70 16 25 O -0.34 -11.06 9.68 -51.31 -0.50 -11.56 16 26 C 0.10 2.65 1.13 -10.79 -0.01 2.64 16 27 C -0.17 -3.51 8.37 71.98 0.60 -2.90 16 28 C -0.14 -2.93 8.85 71.98 0.64 -2.29 16 29 C -0.18 -5.04 8.37 71.98 0.60 -4.44 16 30 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.07 1.13 8.08 -2.39 -0.02 1.11 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.27 14.32 8.31 -92.70 -0.77 13.55 16 34 H 0.12 6.73 7.49 -2.91 -0.02 6.71 16 35 H 0.16 5.41 8.06 -2.91 -0.02 5.38 16 36 H 0.24 5.94 8.06 -2.91 -0.02 5.92 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.06 1.55 5.89 -2.39 -0.01 1.53 16 40 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.11 1.58 8.14 -2.39 -0.02 1.57 16 42 H 0.08 1.47 8.14 -2.38 -0.02 1.46 16 43 H 0.06 1.90 5.89 -2.39 -0.01 1.88 16 44 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -74.96 385.02 8.21 -66.74 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: 1.00 Total: 28.76 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 6.27 Total: 2.53 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.22 Total: -49.55 kcal Atomic # 8 Polarization: -91.48 SS G_CDS: -1.31 Total: -92.79 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -74.96 8.21 -66.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263660360.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.304 kcal (2) G-P(sol) polarization free energy of solvation -74.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds