Wall clock time and date at job start Sat Apr 11 2020 05:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47027 * 2 1 4 4 N 1.46504 * 109.47122 * 179.97438 * 3 2 1 5 5 C 1.46497 * 119.99884 * 90.00277 * 4 3 2 6 6 C 1.53003 * 109.47109 * 270.00001 * 5 4 3 7 7 N 1.46497 * 109.47109 * 180.02562 * 6 5 4 8 8 C 1.34773 * 120.00174 * 180.02562 * 7 6 5 9 9 O 1.21618 * 120.00100 * 359.97438 * 8 7 6 10 10 C 1.47376 * 120.00312 * 179.97438 * 8 7 6 11 11 C 1.47019 * 127.19544 * 180.28123 * 10 8 7 12 12 C 1.34177 * 105.95809 * 180.17417 * 11 10 8 13 13 O 1.34214 * 109.12112 * 359.60541 * 12 11 10 14 14 C 1.33655 * 110.90867 * 0.26473 * 13 12 11 15 15 C 1.34777 * 119.99814 * 270.00304 * 4 3 2 16 16 O 1.21280 * 119.99482 * 180.02562 * 15 4 3 17 17 C 1.50701 * 120.00587 * 0.02562 * 15 4 3 18 18 S 1.80990 * 109.47188 * 180.02562 * 17 15 4 19 19 C 1.76207 * 100.00025 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99885 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00174 * 180.02562 * 19 18 17 22 22 N 1.31635 * 119.99924 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00090 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47181 * 59.99170 * 23 21 19 25 25 H 1.48495 * 109.46999 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.46789 * 299.99786 * 23 21 19 27 27 H 1.08994 * 109.46602 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.46987 * 299.99731 * 1 2 3 29 29 H 1.08996 * 109.46653 * 59.99948 * 1 2 3 30 30 H 1.09001 * 109.47540 * 240.00053 * 2 1 3 31 31 H 1.09003 * 109.47002 * 119.99913 * 2 1 3 32 32 H 1.09003 * 109.46544 * 60.00342 * 3 2 1 33 33 H 1.08994 * 109.47697 * 300.00046 * 3 2 1 34 34 H 1.08994 * 109.46879 * 149.99979 * 5 4 3 35 35 H 1.08996 * 109.46847 * 29.99929 * 5 4 3 36 36 H 1.09003 * 109.46665 * 60.00215 * 6 5 4 37 37 H 1.08996 * 109.46757 * 299.99995 * 6 5 4 38 38 H 0.97003 * 120.00150 * 359.97438 * 7 6 5 39 39 H 1.08005 * 127.02536 * 0.08201 * 11 10 8 40 40 H 1.08002 * 125.44341 * 179.87398 * 12 11 10 41 41 H 1.08001 * 125.79936 * 179.97438 * 14 13 12 42 42 H 1.09006 * 109.46668 * 300.00019 * 17 15 4 43 43 H 1.09003 * 109.46764 * 59.99944 * 17 15 4 44 44 H 0.96995 * 119.99621 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5051 1.4426 0.0006 5 6 4.2381 1.4425 -1.2678 6 6 4.4933 -0.0001 -1.7092 7 7 5.2268 -0.0002 -2.9773 8 6 5.5636 -1.1674 -3.5609 9 8 5.2591 -2.2206 -3.0345 10 6 6.3011 -1.1676 -4.8369 11 6 6.7405 -2.3388 -5.6093 12 6 7.3719 -1.8529 -6.6890 13 8 7.3477 -0.5117 -6.6459 14 6 6.7144 -0.0809 -5.5505 15 6 4.1784 1.4427 1.1681 16 8 5.3912 1.4432 1.1686 17 6 3.4245 1.4422 2.4730 18 16 4.6001 1.4433 3.8491 19 6 3.4795 1.4433 5.2089 20 1 2.4143 1.4432 5.0308 21 6 3.9657 1.4446 6.5089 22 7 5.2640 1.4452 6.7260 23 14 2.7777 1.4439 7.9505 24 1 1.9240 0.2304 7.8878 25 1 3.5433 1.4448 9.2228 26 1 1.9212 2.6554 7.8866 27 1 -0.3632 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6768 1.9564 -0.8899 34 1 5.1904 1.9563 -1.1371 35 1 3.6493 1.9562 -2.0277 36 1 3.5408 -0.5139 -1.8399 37 1 5.0820 -0.5138 -0.9493 38 1 5.4694 0.8398 -3.3974 39 1 6.5877 -3.3781 -5.3583 40 1 7.8234 -2.4462 -7.4703 41 1 6.5571 0.9519 -5.2767 42 1 2.7974 2.3320 2.5305 43 1 2.7981 0.5520 2.5303 44 1 5.6038 1.4465 7.6345 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284697823.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:32 Heat of formation + Delta-G solvation = -60.819749 kcal Electronic energy + Delta-G solvation = -26276.212046 eV Core-core repulsion = 22321.699127 eV Total energy + Delta-G solvation = -3954.512919 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.91362 -39.99190 -39.33238 -36.39328 -35.13973 -33.33168 -32.85132 -32.42835 -30.87942 -29.93617 -28.12226 -26.17113 -25.49841 -24.23692 -22.75800 -21.86361 -21.68667 -20.54803 -19.31025 -18.69812 -17.74539 -16.92920 -16.57236 -16.51508 -16.25101 -15.71431 -15.39472 -15.24644 -14.92405 -14.80474 -14.62545 -13.95714 -13.77645 -13.66736 -13.61250 -13.28940 -13.15655 -12.80473 -12.58268 -12.57106 -12.22716 -12.08868 -11.86654 -11.43815 -11.34563 -11.04560 -11.04288 -10.77500 -10.74230 -10.31436 -10.19264 -9.82284 -9.44276 -9.35361 -9.17353 -9.05990 -8.70695 -8.23872 -6.50701 -6.21606 -3.92510 0.97120 1.71486 2.48500 2.59413 2.98127 3.09790 3.12650 3.23367 3.27219 3.29953 3.59594 4.18159 4.20008 4.29205 4.57849 4.64089 4.73182 4.80023 4.91740 5.04802 5.12562 5.13427 5.17568 5.22233 5.28208 5.31211 5.48743 5.49350 5.55159 5.66649 5.76432 5.79435 5.87798 5.89253 5.95908 5.99909 6.08893 6.10251 6.24574 6.53552 6.57726 7.20335 7.42732 7.59145 7.97804 8.34812 8.47711 9.23513 10.85751 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017280 B = 0.002117 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.028329 B =13221.203527 C =14065.258506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.149 4.149 3 C 0.111 3.889 4 N -0.618 5.618 5 C 0.109 3.891 6 C 0.102 3.898 7 N -0.723 5.723 8 C 0.586 3.414 9 O -0.531 6.531 10 C -0.233 4.233 11 C -0.165 4.165 12 C -0.041 4.041 13 O -0.175 6.175 14 C 0.020 3.980 15 C 0.535 3.465 16 O -0.511 6.511 17 C -0.150 4.150 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.397 0.603 39 H 0.160 0.840 40 H 0.210 0.790 41 H 0.211 0.789 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.936 -0.810 -27.635 27.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.188 4.188 3 C -0.013 4.013 4 N -0.353 5.353 5 C -0.015 4.015 6 C -0.022 4.022 7 N -0.376 5.376 8 C 0.373 3.627 9 O -0.408 6.408 10 C -0.237 4.237 11 C -0.184 4.184 12 C -0.107 4.107 13 O -0.070 6.070 14 C -0.051 4.051 15 C 0.323 3.677 16 O -0.385 6.385 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.231 0.769 39 H 0.178 0.822 40 H 0.226 0.774 41 H 0.228 0.772 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.078 -1.385 -27.292 27.406 hybrid contribution -2.194 0.177 0.874 2.368 sum -4.272 -1.207 -26.417 26.788 Atomic orbital electron populations 1.21690 0.95069 1.02061 1.01866 1.22089 0.96286 0.97231 1.03178 1.21707 0.78979 0.97126 1.03452 1.47872 1.06630 1.75777 1.05042 1.21447 0.98868 0.95295 0.85933 1.21915 0.97027 0.98370 0.84928 1.45671 1.59091 1.08129 1.24673 1.17247 0.78546 0.83772 0.83157 1.90823 1.54367 1.31105 1.64507 1.21560 1.09114 0.94108 0.98935 1.22821 1.01431 0.99660 0.94524 1.23975 1.04887 0.80098 1.01690 1.83797 1.60312 1.23430 1.39427 1.24453 0.95634 0.99341 0.85644 1.20414 0.87929 0.74765 0.84598 1.90708 1.13715 1.47303 1.86731 1.23581 1.04564 1.04845 0.97070 1.85408 1.08012 1.96712 0.93342 1.22806 0.94246 1.59095 0.92177 0.90978 1.24992 0.95675 0.94535 0.98371 1.70008 1.11754 1.46732 1.21756 0.86230 0.80198 0.78799 0.80314 1.19924 1.20814 1.19940 0.92442 0.92282 0.92803 0.91583 0.91057 0.89642 0.90501 0.89126 0.90242 0.90917 0.90438 0.76907 0.82224 0.77387 0.77208 0.89220 0.89089 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.15 -1.52 6.26 -26.73 -0.17 -1.69 16 3 C 0.11 1.12 5.26 -4.04 -0.02 1.10 16 4 N -0.62 -8.05 2.47 -173.69 -0.43 -8.48 16 5 C 0.11 1.13 5.57 -4.04 -0.02 1.11 16 6 C 0.10 1.18 6.00 -4.04 -0.02 1.16 16 7 N -0.72 -6.91 5.55 -61.40 -0.34 -7.25 16 8 C 0.59 7.19 7.81 -12.54 -0.10 7.09 16 9 O -0.53 -8.91 16.98 5.26 0.09 -8.82 16 10 C -0.23 -2.25 6.31 -103.28 -0.65 -2.90 16 11 C -0.16 -1.45 11.01 -37.46 -0.41 -1.87 16 12 C -0.04 -0.26 12.03 29.30 0.35 0.10 16 13 O -0.17 -1.24 10.52 7.65 0.08 -1.16 16 14 C 0.02 0.13 11.61 30.08 0.35 0.48 16 15 C 0.53 9.80 7.69 -10.98 -0.08 9.71 16 16 O -0.51 -11.31 15.44 5.56 0.09 -11.22 16 17 C -0.15 -3.00 4.71 36.01 0.17 -2.83 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 19 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 23 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.67 6.26 -51.93 -0.33 0.34 16 31 H 0.07 0.88 7.22 -51.93 -0.37 0.51 16 32 H 0.09 0.90 6.44 -51.93 -0.33 0.56 16 33 H 0.08 0.57 7.89 -51.93 -0.41 0.16 16 34 H 0.09 1.05 7.42 -51.93 -0.39 0.66 16 35 H 0.08 0.55 7.89 -51.93 -0.41 0.14 16 36 H 0.07 0.85 6.26 -51.93 -0.33 0.53 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.40 2.28 7.44 -40.82 -0.30 1.97 16 39 H 0.16 1.35 8.06 -52.48 -0.42 0.93 16 40 H 0.21 0.50 8.06 -52.49 -0.42 0.08 16 41 H 0.21 0.47 7.47 -52.49 -0.39 0.08 16 42 H 0.09 1.64 7.40 -51.91 -0.38 1.26 16 43 H 0.09 1.71 7.19 -51.92 -0.37 1.33 16 44 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 388.49 15.07 5.85 5.85 Total: -1.00 -38.53 388.49 -7.31 -45.84 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.10 Total: 0.48 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -0.04 Total: -2.29 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: -0.04 Total: -41.15 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: 0.26 Total: -21.20 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.53 -7.31 -45.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284697823.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.982 kcal (2) G-P(sol) polarization free energy of solvation -38.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds