Wall clock time and date at job start Sat Apr 11 2020 05:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47049 * 2 1 4 4 H 1.09001 * 109.46832 * 55.00084 * 3 2 1 5 5 C 1.53006 * 109.47127 * 174.99763 * 3 2 1 6 6 N 1.46495 * 109.47168 * 175.00143 * 5 3 2 7 7 C 1.34776 * 120.00166 * 180.02562 * 6 5 3 8 8 O 1.21690 * 119.99773 * 359.97438 * 7 6 5 9 9 C 1.46655 * 120.00090 * 179.97438 * 7 6 5 10 10 C 1.36540 * 125.98715 * 179.97438 * 9 7 6 11 11 C 1.40370 * 106.70843 * 179.97438 * 10 9 7 12 12 C 1.35125 * 107.11503 * 0.02562 * 11 10 9 13 13 C 1.50695 * 125.61898 * 180.02562 * 12 11 10 14 14 O 1.33934 * 108.76679 * 359.74899 * 12 11 10 15 15 N 1.46492 * 109.47244 * 295.00135 * 3 2 1 16 16 C 1.34772 * 120.00385 * 85.00122 * 15 3 2 17 17 O 1.21278 * 119.99770 * 359.97438 * 16 15 3 18 18 C 1.50705 * 120.00486 * 180.02562 * 16 15 3 19 19 S 1.80999 * 109.47084 * 179.97438 * 18 16 15 20 20 C 1.76205 * 99.99558 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00158 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99627 * 179.97438 * 20 19 18 23 23 N 1.31623 * 120.00269 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99592 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47025 * 60.00394 * 24 22 20 26 26 H 1.48503 * 109.46467 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47044 * 299.99733 * 24 22 20 28 28 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47252 * 299.99805 * 1 2 3 30 30 H 1.08998 * 109.47250 * 59.99881 * 1 2 3 31 31 H 1.08998 * 109.47252 * 240.00195 * 2 1 3 32 32 H 1.09006 * 109.47074 * 120.00389 * 2 1 3 33 33 H 1.09000 * 109.47314 * 295.00428 * 5 3 2 34 34 H 1.09007 * 109.46744 * 55.00049 * 5 3 2 35 35 H 0.97003 * 120.00137 * 359.97438 * 6 5 3 36 36 H 1.08002 * 126.64918 * 0.02562 * 10 9 7 37 37 H 1.07998 * 126.43930 * 180.02562 * 11 10 9 38 38 H 1.09005 * 109.47243 * 89.99342 * 13 12 11 39 39 H 1.09001 * 109.47745 * 209.99727 * 13 12 11 40 40 H 1.09004 * 109.46729 * 329.99820 * 13 12 11 41 41 H 0.97012 * 120.00025 * 264.99832 * 15 3 2 42 42 H 1.08998 * 109.46823 * 299.99865 * 18 16 15 43 43 H 1.08996 * 109.47135 * 59.99371 * 18 16 15 44 44 H 0.97001 * 120.00394 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5649 1.4443 0.1258 6 7 4.0631 2.8168 0.0061 7 6 5.3857 3.0629 0.0860 8 8 6.1661 2.1452 0.2580 9 6 5.8845 4.4368 -0.0345 10 6 7.1924 4.8239 0.0282 11 6 7.2089 6.2180 -0.1351 12 6 5.9265 6.6157 -0.2878 13 6 5.4668 8.0359 -0.4940 14 8 5.1319 5.5390 -0.2317 15 7 1.6524 2.0975 -1.2517 16 6 0.4352 2.6644 -1.3669 17 8 -0.3395 2.6319 -0.4344 18 6 0.0362 3.3377 -2.6548 19 16 -1.6427 3.9953 -2.4969 20 6 -1.8443 4.7065 -4.0964 21 1 -1.0441 4.6456 -4.8192 22 6 -3.0318 5.3440 -4.4277 23 7 -4.0072 5.4178 -3.5470 24 14 -3.2452 6.0987 -6.1232 25 1 -3.1051 5.0416 -7.1566 26 1 -4.5924 6.7152 -6.2244 27 1 -2.2077 7.1396 -6.3358 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8499 1.0376 1.0961 34 1 3.9954 0.8311 -0.6659 35 1 3.4410 3.5483 -0.1315 36 1 8.0485 4.1819 0.1741 37 1 8.0823 6.8532 -0.1382 38 1 5.4397 8.2578 -1.5608 39 1 4.4696 8.1600 -0.0716 40 1 6.1585 8.7172 0.0014 41 1 2.2720 2.1232 -1.9978 42 1 0.7276 4.1530 -2.8678 43 1 0.0673 2.6131 -3.4684 44 1 -4.8370 5.8637 -3.7784 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285032221.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:37 Heat of formation + Delta-G solvation = -70.061448 kcal Electronic energy + Delta-G solvation = -26638.685369 eV Core-core repulsion = 22683.771700 eV Total energy + Delta-G solvation = -3954.913669 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.00135 -40.14671 -39.30150 -36.54821 -34.29188 -33.47966 -32.47580 -32.44065 -32.31239 -29.65804 -28.62485 -27.13884 -25.51039 -23.92573 -22.19399 -21.90405 -21.48970 -20.44430 -20.36370 -18.73986 -17.81012 -16.87509 -16.64673 -16.44847 -16.15942 -15.63191 -15.30557 -15.11486 -14.83179 -14.47996 -14.21489 -13.67618 -13.56662 -13.52700 -13.40806 -13.35057 -13.28829 -13.13387 -13.05989 -12.54396 -12.33308 -12.26919 -11.79532 -11.50319 -11.25652 -11.06933 -11.06388 -10.82272 -10.77665 -10.59624 -10.34365 -9.85205 -9.56129 -9.40365 -9.09258 -8.94140 -8.78507 -8.28093 -6.53334 -6.24730 -3.95440 0.74080 2.00564 2.28259 2.81326 2.88817 2.98335 3.04105 3.21031 3.25200 3.28297 3.65651 4.17596 4.23628 4.34468 4.55957 4.58965 4.83745 4.97359 4.98691 5.08673 5.09716 5.10605 5.20391 5.26130 5.30981 5.36487 5.41216 5.53021 5.57414 5.66883 5.75165 5.81940 5.84937 5.98104 6.05070 6.05306 6.09992 6.21124 6.53519 6.54781 6.61257 7.12406 7.56192 7.61619 7.74236 8.31867 8.54339 9.20705 10.82561 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008895 B = 0.002993 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3147.245704 B = 9352.806122 C =11969.845894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C 0.134 3.866 4 H 0.097 0.903 5 C 0.112 3.888 6 N -0.718 5.718 7 C 0.606 3.394 8 O -0.523 6.523 9 C -0.087 4.087 10 C -0.114 4.114 11 C -0.228 4.228 12 C 0.028 3.972 13 C -0.083 4.083 14 O -0.160 6.160 15 N -0.737 5.737 16 C 0.533 3.467 17 O -0.508 6.508 18 C -0.155 4.155 19 S -0.057 6.057 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.075 3.925 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.411 0.589 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.398 0.602 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.415 -1.890 7.027 22.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.029 3.971 4 H 0.115 0.885 5 C -0.012 4.012 6 N -0.369 5.369 7 C 0.392 3.608 8 O -0.402 6.402 9 C -0.139 4.139 10 C -0.135 4.135 11 C -0.247 4.247 12 C -0.025 4.025 13 C -0.139 4.139 14 O -0.056 6.056 15 N -0.392 5.392 16 C 0.319 3.681 17 O -0.381 6.381 18 C -0.306 4.306 19 S 0.170 5.830 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.247 0.753 36 H 0.178 0.822 37 H 0.174 0.826 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.232 0.768 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 20.124 -2.572 8.740 22.090 hybrid contribution 0.991 0.874 -2.648 2.959 sum 21.115 -1.698 6.092 22.042 Atomic orbital electron populations 1.21805 0.93940 1.00760 1.03886 1.21877 0.97865 0.94780 1.02264 1.21253 0.92079 0.94902 0.88911 0.88514 1.21785 0.93083 0.82745 1.03560 1.45899 1.07100 1.10711 1.73223 1.16513 0.82478 0.84844 0.76935 1.90882 1.56189 1.42895 1.50202 1.21953 0.90800 0.86540 1.14564 1.21942 0.96149 0.95351 1.00011 1.21601 0.97321 0.95229 1.10596 1.22913 0.89304 0.89165 1.01098 1.20477 1.03539 0.85925 1.03957 1.84041 1.37491 1.14455 1.69611 1.46130 1.17505 1.59506 1.16093 1.20261 0.80749 0.77428 0.89615 1.90720 1.50244 1.57114 1.40046 1.23551 1.07092 1.02838 0.97100 1.85367 1.06298 1.70908 1.20460 1.22829 1.03923 1.42260 0.99535 0.91023 1.24979 0.94818 0.95531 0.98154 1.69998 1.05013 1.40961 1.34308 0.86240 0.77537 0.79277 0.82551 1.19929 1.20795 1.19939 0.93535 0.91979 0.91723 0.91631 0.91096 0.89560 0.90353 0.75341 0.82243 0.82592 0.89263 0.89758 0.88859 0.76769 0.89343 0.89309 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.51 37.16 0.32 -1.61 16 2 C -0.13 -1.29 5.61 -26.73 -0.15 -1.44 16 3 C 0.13 1.39 2.42 -67.93 -0.16 1.22 16 4 H 0.10 1.16 7.58 -51.93 -0.39 0.77 16 5 C 0.11 1.01 5.23 -4.04 -0.02 0.99 16 6 N -0.72 -7.30 5.38 -61.62 -0.33 -7.63 16 7 C 0.61 7.26 7.79 -12.86 -0.10 7.16 16 8 O -0.52 -7.49 16.86 5.20 0.09 -7.40 16 9 C -0.09 -0.99 7.13 -36.80 -0.26 -1.25 16 10 C -0.11 -1.15 10.62 -39.39 -0.42 -1.57 16 11 C -0.23 -1.95 10.77 -39.89 -0.43 -2.38 16 12 C 0.03 0.25 7.31 -35.42 -0.26 -0.01 16 13 C -0.08 -0.47 10.41 36.00 0.37 -0.10 16 14 O -0.16 -1.78 10.40 4.99 0.05 -1.73 16 15 N -0.74 -8.70 4.47 -53.81 -0.24 -8.94 16 16 C 0.53 8.95 6.42 -10.99 -0.07 8.88 16 17 O -0.51 -10.24 13.00 5.56 0.07 -10.17 16 18 C -0.16 -2.96 6.16 36.01 0.22 -2.74 16 19 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 20 C -0.54 -14.99 9.50 30.94 0.29 -14.69 16 21 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 22 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -25.74 13.22 55.49 0.73 -25.01 16 24 Si 0.92 21.07 29.55 -169.99 -5.02 16.05 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.89 7.85 -51.93 -0.41 0.48 16 30 H 0.06 1.03 5.64 -51.93 -0.29 0.74 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.41 4.17 7.89 -40.82 -0.32 3.84 16 36 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.40 3.90 8.60 -40.81 -0.35 3.55 16 42 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 43 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 389.37 15.07 5.87 5.87 Total: -1.00 -34.68 389.37 -8.14 -42.82 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -6.38 Total: 5.37 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -0.76 Total: -5.54 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.16 Total: -41.58 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: 0.21 Total: -19.30 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.68 -8.14 -42.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285032221.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.240 kcal (2) G-P(sol) polarization free energy of solvation -34.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds