Wall clock time and date at job start Sat Apr 11 2020 05:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47049 * 2 1 4 4 H 1.09001 * 109.46832 * 55.00084 * 3 2 1 5 5 C 1.53006 * 109.47127 * 174.99763 * 3 2 1 6 6 N 1.46495 * 109.47168 * 175.00143 * 5 3 2 7 7 C 1.34776 * 120.00166 * 180.02562 * 6 5 3 8 8 O 1.21690 * 119.99773 * 359.97438 * 7 6 5 9 9 C 1.46655 * 120.00090 * 179.97438 * 7 6 5 10 10 C 1.36540 * 125.98715 * 179.97438 * 9 7 6 11 11 C 1.40370 * 106.70843 * 179.97438 * 10 9 7 12 12 C 1.35125 * 107.11503 * 0.02562 * 11 10 9 13 13 C 1.50695 * 125.61898 * 180.02562 * 12 11 10 14 14 O 1.33934 * 108.76679 * 359.74899 * 12 11 10 15 15 N 1.46492 * 109.47244 * 295.00135 * 3 2 1 16 16 C 1.34772 * 120.00385 * 85.00122 * 15 3 2 17 17 O 1.21278 * 119.99770 * 359.97438 * 16 15 3 18 18 C 1.50705 * 120.00486 * 180.02562 * 16 15 3 19 19 S 1.80999 * 109.47084 * 179.97438 * 18 16 15 20 20 C 1.76205 * 99.99558 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00158 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99627 * 179.97438 * 20 19 18 23 23 N 1.31623 * 120.00269 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99592 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47025 * 60.00394 * 24 22 20 26 26 H 1.48503 * 109.46467 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47044 * 299.99733 * 24 22 20 28 28 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47252 * 299.99805 * 1 2 3 30 30 H 1.08998 * 109.47250 * 59.99881 * 1 2 3 31 31 H 1.08998 * 109.47252 * 240.00195 * 2 1 3 32 32 H 1.09006 * 109.47074 * 120.00389 * 2 1 3 33 33 H 1.09000 * 109.47314 * 295.00428 * 5 3 2 34 34 H 1.09007 * 109.46744 * 55.00049 * 5 3 2 35 35 H 0.97003 * 120.00137 * 359.97438 * 6 5 3 36 36 H 1.08002 * 126.64918 * 0.02562 * 10 9 7 37 37 H 1.07998 * 126.43930 * 180.02562 * 11 10 9 38 38 H 1.09005 * 109.47243 * 89.99342 * 13 12 11 39 39 H 1.09001 * 109.47745 * 209.99727 * 13 12 11 40 40 H 1.09004 * 109.46729 * 329.99820 * 13 12 11 41 41 H 0.97012 * 120.00025 * 264.99832 * 15 3 2 42 42 H 1.08998 * 109.46823 * 299.99865 * 18 16 15 43 43 H 1.08996 * 109.47135 * 59.99371 * 18 16 15 44 44 H 0.97001 * 120.00394 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5649 1.4443 0.1258 6 7 4.0631 2.8168 0.0061 7 6 5.3857 3.0629 0.0860 8 8 6.1661 2.1452 0.2580 9 6 5.8845 4.4368 -0.0345 10 6 7.1924 4.8239 0.0282 11 6 7.2089 6.2180 -0.1351 12 6 5.9265 6.6157 -0.2878 13 6 5.4668 8.0359 -0.4940 14 8 5.1319 5.5390 -0.2317 15 7 1.6524 2.0975 -1.2517 16 6 0.4352 2.6644 -1.3669 17 8 -0.3395 2.6319 -0.4344 18 6 0.0362 3.3377 -2.6548 19 16 -1.6427 3.9953 -2.4969 20 6 -1.8443 4.7065 -4.0964 21 1 -1.0441 4.6456 -4.8192 22 6 -3.0318 5.3440 -4.4277 23 7 -4.0072 5.4178 -3.5470 24 14 -3.2452 6.0987 -6.1232 25 1 -3.1051 5.0416 -7.1566 26 1 -4.5924 6.7152 -6.2244 27 1 -2.2077 7.1396 -6.3358 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8499 1.0376 1.0961 34 1 3.9954 0.8311 -0.6659 35 1 3.4410 3.5483 -0.1315 36 1 8.0485 4.1819 0.1741 37 1 8.0823 6.8532 -0.1382 38 1 5.4397 8.2578 -1.5608 39 1 4.4696 8.1600 -0.0716 40 1 6.1585 8.7172 0.0014 41 1 2.2720 2.1232 -1.9978 42 1 0.7276 4.1530 -2.8678 43 1 0.0673 2.6131 -3.4684 44 1 -4.8370 5.8637 -3.7784 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285032221.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:36 Heat of formation + Delta-G solvation = -94.563174 kcal Electronic energy + Delta-G solvation = -26639.747844 eV Core-core repulsion = 22683.771700 eV Total energy + Delta-G solvation = -3955.976144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.73758 -41.21725 -40.38986 -37.63606 -35.21285 -34.58076 -34.21819 -33.61507 -32.96350 -30.84695 -29.73838 -27.92672 -27.61581 -24.79049 -22.97281 -22.68729 -22.50838 -21.59531 -21.18850 -19.91184 -19.43100 -17.97784 -17.58021 -17.48128 -17.18190 -16.87329 -16.61788 -16.37792 -16.16850 -15.79302 -15.32251 -14.91826 -14.64960 -14.60177 -14.30480 -14.15850 -14.06380 -13.99502 -13.90826 -13.71975 -13.50579 -13.16484 -13.01631 -12.86227 -12.81143 -12.64699 -12.50481 -12.18981 -11.77885 -11.71727 -11.53564 -11.12625 -11.07321 -10.86395 -10.37583 -10.26409 -10.07649 -9.49891 -8.64233 -8.34285 -6.11280 -0.05202 1.27339 1.31311 1.43315 1.46665 1.54010 1.57069 1.65716 2.03358 2.04692 2.26444 2.31702 2.99848 3.32848 3.48008 3.56300 3.86804 3.91830 3.97013 4.00186 4.12087 4.31497 4.38926 4.49811 4.51065 4.53977 4.56575 4.62149 4.69499 4.71832 4.82042 4.90335 4.91277 5.06038 5.11652 5.14646 5.20792 5.41872 5.43323 5.48426 5.53523 5.81153 6.19716 6.27527 6.48721 6.86871 7.07323 7.27207 8.74403 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008895 B = 0.002993 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3147.245704 B = 9352.806122 C =11969.845894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C 0.140 3.860 4 H 0.081 0.919 5 C 0.119 3.881 6 N -0.712 5.712 7 C 0.606 3.394 8 O -0.552 6.552 9 C -0.116 4.116 10 C -0.116 4.116 11 C -0.229 4.229 12 C 0.022 3.978 13 C -0.083 4.083 14 O -0.176 6.176 15 N -0.713 5.713 16 C 0.539 3.461 17 O -0.546 6.546 18 C -0.133 4.133 19 S -0.142 6.142 20 C -0.549 4.549 21 H 0.080 0.920 22 C 0.016 3.984 23 N -0.910 5.910 24 Si 0.995 3.005 25 H -0.263 1.263 26 H -0.279 1.279 27 H -0.262 1.262 28 H 0.058 0.942 29 H 0.041 0.959 30 H 0.032 0.968 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.411 0.589 36 H 0.167 0.833 37 H 0.185 0.815 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.118 0.882 41 H 0.412 0.588 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.801 -1.630 5.860 24.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C 0.035 3.965 4 H 0.099 0.901 5 C -0.004 4.004 6 N -0.363 5.363 7 C 0.394 3.606 8 O -0.433 6.433 9 C -0.167 4.167 10 C -0.137 4.137 11 C -0.248 4.248 12 C -0.031 4.031 13 C -0.139 4.139 14 O -0.073 6.073 15 N -0.368 5.368 16 C 0.325 3.675 17 O -0.423 6.423 18 C -0.284 4.284 19 S 0.085 5.915 20 C -0.697 4.697 21 H 0.098 0.902 22 C -0.189 4.189 23 N -0.547 5.547 24 Si 0.817 3.183 25 H -0.188 1.188 26 H -0.204 1.204 27 H -0.186 1.186 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.247 0.753 36 H 0.185 0.815 37 H 0.202 0.798 38 H 0.117 0.883 39 H 0.099 0.901 40 H 0.136 0.864 41 H 0.249 0.751 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 22.548 -2.329 7.566 23.897 hybrid contribution 0.346 0.782 -2.222 2.381 sum 22.894 -1.547 5.343 23.560 Atomic orbital electron populations 1.21739 0.96390 1.00698 1.01325 1.21853 0.95384 0.94512 1.04361 1.21298 0.92999 0.94952 0.87249 0.90110 1.21796 0.91509 0.82390 1.04687 1.45889 1.06661 1.11171 1.72568 1.16585 0.82595 0.84927 0.76483 1.90855 1.56825 1.43763 1.51868 1.21953 0.91420 0.86603 1.16756 1.22239 0.95963 0.96437 0.99028 1.21950 0.98153 0.94753 1.09917 1.23650 0.89610 0.89808 0.99983 1.20666 1.03974 0.84350 1.04879 1.84025 1.38220 1.14930 1.70090 1.45851 1.15801 1.57881 1.17237 1.19850 0.81846 0.77573 0.88248 1.90720 1.51779 1.58819 1.40950 1.23395 1.02335 1.03629 0.99070 1.85502 1.12746 1.71945 1.21259 1.23182 1.04465 1.42237 0.99803 0.90154 1.26076 0.94337 0.95886 1.02644 1.70162 1.05665 1.42089 1.36769 0.85058 0.77758 0.78607 0.76924 1.18812 1.20413 1.18620 0.92308 0.93948 0.94882 0.90022 0.88470 0.88471 0.89074 0.75334 0.81529 0.79815 0.88280 0.90120 0.86356 0.75102 0.87604 0.87787 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 8.51 71.98 0.61 -3.14 16 2 C -0.12 -2.19 5.61 30.59 0.17 -2.01 16 3 C 0.14 2.69 2.42 44.99 0.11 2.80 16 4 H 0.08 1.90 7.58 -2.39 -0.02 1.89 16 5 C 0.12 1.91 5.23 86.38 0.45 2.36 16 6 N -0.71 -13.67 5.38 -467.10 -2.51 -16.19 16 7 C 0.61 14.11 7.79 86.44 0.67 14.78 16 8 O -0.55 -15.39 16.86 -4.32 -0.07 -15.46 16 9 C -0.12 -2.59 7.13 24.07 0.17 -2.42 16 10 C -0.12 -2.23 10.62 22.39 0.24 -1.99 16 11 C -0.23 -3.46 10.77 22.07 0.24 -3.22 16 12 C 0.02 0.36 7.31 24.97 0.18 0.54 16 13 C -0.08 -0.78 10.41 71.23 0.74 -0.04 16 14 O -0.18 -3.80 10.40 -5.08 -0.05 -3.86 16 15 N -0.71 -15.87 4.47 -442.55 -1.98 -17.85 16 16 C 0.54 18.03 6.42 87.66 0.56 18.60 16 17 O -0.55 -22.68 13.00 -3.02 -0.04 -22.72 16 18 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 19 S -0.14 -7.62 20.57 -56.49 -1.16 -8.79 16 20 C -0.55 -30.85 9.50 67.95 0.65 -30.21 16 21 H 0.08 4.20 7.80 -2.91 -0.02 4.18 16 22 C 0.02 0.87 5.49 84.86 0.47 1.34 16 23 N -0.91 -55.24 13.22 21.65 0.29 -54.95 16 24 Si 0.99 42.99 29.55 68.60 2.03 45.01 16 25 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 26 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 28 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.04 1.24 7.85 -2.39 -0.02 1.23 16 30 H 0.03 1.06 5.64 -2.39 -0.01 1.05 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.41 8.00 7.89 -92.71 -0.73 7.27 16 36 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 37 H 0.18 1.59 8.06 -2.91 -0.02 1.56 16 38 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.41 7.13 8.60 -92.70 -0.80 6.33 16 42 H 0.11 3.63 8.14 -2.40 -0.02 3.61 16 43 H 0.10 3.61 8.14 -2.40 -0.02 3.59 16 44 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -78.23 389.37 1.70 -76.53 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: -0.49 Total: 25.46 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: 5.70 Total: -7.19 kcal Atomic # 7 Polarization: -84.78 SS G_CDS: -4.21 Total: -88.99 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -0.16 Total: -42.04 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: -7.62 SS G_CDS: -1.16 Total: -8.79 kcal Total: -78.23 1.70 -76.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285032221.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.036 kcal (2) G-P(sol) polarization free energy of solvation -78.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds