Wall clock time and date at job start Sat Apr 11 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 6 6 N 1.46496 * 109.46967 * 174.99636 * 5 3 2 7 7 C 1.34781 * 120.00112 * 179.97438 * 6 5 3 8 8 O 1.21611 * 119.99669 * 0.02562 * 7 6 5 9 9 C 1.47379 * 120.00382 * 180.02562 * 7 6 5 10 10 C 1.36418 * 127.18670 * 359.68161 * 9 7 6 11 11 O 1.33655 * 108.39406 * 179.89154 * 10 9 7 12 12 C 1.34216 * 110.90725 * 0.39849 * 11 10 9 13 13 C 1.50699 * 125.43733 * 179.76074 * 12 11 10 14 14 C 1.34180 * 109.12665 * 359.75176 * 12 11 10 15 15 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 16 16 C 1.34785 * 119.99572 * 85.00499 * 15 3 2 17 17 O 1.21274 * 119.99855 * 359.97438 * 16 15 3 18 18 C 1.50703 * 119.99767 * 179.97438 * 16 15 3 19 19 S 1.80996 * 109.47012 * 179.97438 * 18 16 15 20 20 C 1.76201 * 99.99861 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00036 * 359.97438 * 20 19 18 22 22 C 1.38805 * 119.99709 * 179.97438 * 20 19 18 23 23 N 1.31627 * 119.99485 * 179.97438 * 22 20 19 24 24 Si 1.86794 * 120.00168 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.47158 * 90.00053 * 24 22 20 26 26 H 1.48501 * 109.47268 * 209.99922 * 24 22 20 27 27 H 1.48502 * 109.47258 * 330.00273 * 24 22 20 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 1.09001 * 109.47277 * 294.99844 * 5 3 2 34 34 H 1.09008 * 109.47118 * 54.99823 * 5 3 2 35 35 H 0.97004 * 120.00126 * 0.02562 * 6 5 3 36 36 H 1.08005 * 125.80390 * 0.02562 * 10 9 7 37 37 H 1.09002 * 109.47216 * 269.99764 * 13 12 11 38 38 H 1.09005 * 109.47164 * 29.99610 * 13 12 11 39 39 H 1.08999 * 109.47440 * 149.99266 * 13 12 11 40 40 H 1.07992 * 127.02173 * 180.02562 * 14 12 11 41 41 H 0.96999 * 120.00274 * 264.99733 * 15 3 2 42 42 H 1.09001 * 109.47037 * 299.99900 * 18 16 15 43 43 H 1.09004 * 109.47137 * 59.99859 * 18 16 15 44 44 H 0.97001 * 119.99802 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8168 0.0059 7 6 5.3856 3.0631 0.0868 8 8 6.1655 2.1459 0.2588 9 6 5.8869 4.4438 -0.0332 10 6 5.1497 5.5742 -0.2328 11 8 5.9829 6.6181 -0.2810 12 6 7.2562 6.2220 -0.1286 13 6 8.4600 7.1286 -0.1352 14 6 7.2862 4.8900 0.0306 15 7 1.6525 2.0974 -1.2519 16 6 0.4351 2.6644 -1.3670 17 8 -0.3395 2.6319 -0.4345 18 6 0.0367 3.3385 -2.6546 19 16 -1.6423 3.9958 -2.4970 20 6 -1.8439 4.7068 -4.0965 21 1 -1.0435 4.6467 -4.8190 22 6 -3.0316 5.3442 -4.4280 23 7 -3.1820 5.8757 -5.6227 24 14 -4.4164 5.4475 -3.1786 25 1 -4.2655 6.6864 -2.3737 26 1 -5.7213 5.4734 -3.8870 27 1 -4.3633 4.2651 -2.2818 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8499 1.0378 1.0961 34 1 3.9954 0.8311 -0.6659 35 1 3.4409 3.5484 -0.1309 36 1 4.0751 5.6184 -0.3325 37 1 8.8348 7.2276 -1.1539 38 1 8.1776 8.1103 0.2451 39 1 9.2384 6.7037 0.4986 40 1 8.1598 4.2721 0.1762 41 1 2.2720 2.1231 -1.9978 42 1 0.7281 4.1540 -2.8669 43 1 0.0680 2.6143 -3.4688 44 1 -4.0118 6.3214 -5.8543 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285045982.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:41 Heat of formation + Delta-G solvation = -70.753984 kcal Electronic energy + Delta-G solvation = -26492.660055 eV Core-core repulsion = 22537.716356 eV Total energy + Delta-G solvation = -3954.943700 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.90015 -40.20501 -39.32375 -36.58565 -34.21874 -33.42566 -32.59140 -32.47899 -32.34327 -29.62909 -28.45370 -26.92941 -25.66401 -24.59916 -22.77862 -21.65383 -21.38734 -20.53669 -19.97715 -18.26048 -17.82662 -16.86886 -16.64680 -16.62517 -16.36432 -15.88983 -15.42823 -15.19294 -15.00310 -14.72438 -14.21522 -13.76297 -13.64181 -13.60014 -13.54659 -13.43241 -13.28891 -13.17131 -12.99019 -12.83560 -12.43863 -12.20535 -11.92534 -11.57367 -11.33884 -11.29775 -11.05714 -10.89138 -10.64085 -10.33928 -10.11710 -9.90858 -9.61359 -9.42991 -9.08743 -9.03330 -8.93308 -8.56511 -6.97706 -6.33597 -4.05925 1.00944 1.69338 2.46890 2.64904 2.77748 2.87407 3.07825 3.24312 3.29213 3.45659 3.58498 4.15748 4.27986 4.28920 4.32655 4.59263 4.66845 4.77850 4.90063 4.92323 5.03593 5.05538 5.10031 5.15344 5.17594 5.23781 5.38305 5.39142 5.41243 5.62663 5.66250 5.67262 5.76716 5.93295 5.95219 5.99081 6.05277 6.12469 6.42908 6.50914 6.65239 7.14336 7.48099 7.89391 7.90091 8.36948 8.38152 9.12407 10.75681 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009954 B = 0.002780 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.375894 B =10071.308123 C =12407.449183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.130 4.130 3 C 0.134 3.866 4 H 0.097 0.903 5 C 0.114 3.886 6 N -0.726 5.726 7 C 0.590 3.410 8 O -0.537 6.537 9 C -0.236 4.236 10 C 0.027 3.973 11 O -0.170 6.170 12 C -0.015 4.015 13 C -0.075 4.075 14 C -0.164 4.164 15 N -0.735 5.735 16 C 0.531 3.469 17 O -0.509 6.509 18 C -0.126 4.126 19 S -0.139 6.139 20 C -0.523 4.523 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.402 0.598 36 H 0.212 0.788 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.159 0.841 41 H 0.400 0.600 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.716 -3.951 12.010 24.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C 0.029 3.971 4 H 0.115 0.885 5 C -0.010 4.010 6 N -0.379 5.379 7 C 0.377 3.623 8 O -0.415 6.415 9 C -0.241 4.241 10 C -0.044 4.044 11 O -0.065 6.065 12 C -0.063 4.063 13 C -0.131 4.131 14 C -0.183 4.183 15 N -0.390 5.390 16 C 0.317 3.683 17 O -0.383 6.383 18 C -0.277 4.277 19 S 0.087 5.913 20 C -0.670 4.670 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.237 0.763 36 H 0.229 0.771 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.176 0.824 41 H 0.234 0.766 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 19.790 -4.281 13.530 24.353 hybrid contribution 0.093 0.349 -1.320 1.368 sum 19.883 -3.932 12.210 23.662 Atomic orbital electron populations 1.21804 0.94036 1.00802 1.03732 1.21879 0.97765 0.94845 1.02381 1.21272 0.92360 0.94852 0.88612 0.88542 1.21706 0.92682 0.83126 1.03448 1.45825 1.07140 1.10135 1.74774 1.17254 0.81827 0.87106 0.76072 1.90789 1.55956 1.45578 1.49177 1.21443 0.94672 0.93670 1.14268 1.24500 0.96054 0.83901 0.99941 1.83759 1.16390 1.36226 1.70164 1.22367 0.83832 0.94454 1.05660 1.20349 0.90776 0.98095 1.03876 1.22459 0.96164 0.93505 1.06210 1.46110 1.17349 1.59303 1.16287 1.20249 0.80918 0.77599 0.89517 1.90721 1.50258 1.57307 1.40040 1.23300 1.03917 1.03020 0.97444 1.84781 1.11352 1.72693 1.22460 1.22309 1.05582 1.41576 0.97544 0.89417 1.24721 0.97818 0.93569 0.95216 1.69936 1.26901 1.35372 1.19401 0.86737 0.81748 0.81195 0.82164 1.19219 1.19940 1.15924 0.93499 0.91804 0.92048 0.91049 0.91559 0.89776 0.90535 0.76277 0.77115 0.89810 0.90269 0.89141 0.82371 0.76572 0.88623 0.88523 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.51 37.16 0.32 -1.47 16 2 C -0.13 -1.20 5.61 -26.73 -0.15 -1.35 16 3 C 0.13 1.24 2.42 -67.93 -0.16 1.08 16 4 H 0.10 1.03 7.58 -51.93 -0.39 0.64 16 5 C 0.11 0.96 5.23 -4.04 -0.02 0.93 16 6 N -0.73 -6.40 5.38 -61.40 -0.33 -6.73 16 7 C 0.59 6.71 7.81 -12.54 -0.10 6.61 16 8 O -0.54 -7.93 16.98 5.27 0.09 -7.84 16 9 C -0.24 -2.43 6.31 -103.28 -0.65 -3.08 16 10 C 0.03 0.23 11.61 30.08 0.35 0.58 16 11 O -0.17 -1.62 10.52 7.64 0.08 -1.54 16 12 C -0.01 -0.12 7.28 -35.74 -0.26 -0.38 16 13 C -0.07 -0.36 10.40 36.01 0.37 0.01 16 14 C -0.16 -1.60 10.90 -37.45 -0.41 -2.01 16 15 N -0.74 -7.62 4.47 -53.80 -0.24 -7.86 16 16 C 0.53 8.01 6.42 -10.98 -0.07 7.94 16 17 O -0.51 -9.36 13.00 5.56 0.07 -9.28 16 18 C -0.13 -2.21 6.16 36.01 0.22 -1.99 16 19 S -0.14 -3.32 18.55 -107.50 -1.99 -5.32 16 20 C -0.52 -14.56 10.04 30.94 0.31 -14.25 16 21 H 0.09 2.56 8.03 -52.49 -0.42 2.14 16 22 C 0.10 2.73 5.50 -17.43 -0.10 2.63 16 23 N -0.88 -26.08 13.97 55.49 0.78 -25.31 16 24 Si 0.86 21.24 27.74 -169.99 -4.71 16.53 16 25 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 27 H -0.24 -5.80 6.74 56.52 0.38 -5.42 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.95 5.64 -51.93 -0.29 0.66 16 30 H 0.06 0.82 7.85 -51.93 -0.41 0.41 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 35 H 0.40 3.03 7.11 -40.82 -0.29 2.74 16 36 H 0.21 1.15 7.47 -52.48 -0.39 0.76 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.16 1.41 8.06 -52.49 -0.42 0.98 16 41 H 0.40 3.38 8.60 -40.82 -0.35 3.03 16 42 H 0.10 1.53 8.14 -51.92 -0.42 1.11 16 43 H 0.10 1.62 8.14 -51.91 -0.42 1.19 16 44 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 385.84 15.07 5.81 5.81 Total: -1.00 -35.51 385.84 -7.15 -42.66 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.36 Total: 3.61 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -0.35 Total: -4.74 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.20 Total: -39.90 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.24 Total: -18.66 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.71 Total: 16.53 kcal Atomic # 16 Polarization: -3.32 SS G_CDS: -1.99 Total: -5.32 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.51 -7.15 -42.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285045982.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.090 kcal (2) G-P(sol) polarization free energy of solvation -35.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds