Wall clock time and date at job start Sat Apr 11 2020 05:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52992 * 109.47659 * 33.28044 * 3 2 1 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 3 7 7 O 1.21280 * 119.99781 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99795 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99566 * 180.02562 * 8 6 5 10 10 H 1.08998 * 110.64369 * 34.30500 * 9 8 6 11 11 C 1.54319 * 110.72415 * 271.15876 * 9 8 6 12 12 N 1.47023 * 107.27686 * 219.44694 * 11 9 8 13 13 C 1.34775 * 125.65110 * 178.97718 * 12 11 9 14 14 O 1.21278 * 119.99987 * 359.97438 * 13 12 11 15 15 C 1.50697 * 119.99919 * 180.02562 * 13 12 11 16 16 S 1.81002 * 109.47190 * 179.97438 * 15 13 12 17 17 C 1.76193 * 100.00253 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99849 * 0.02562 * 17 16 15 19 19 C 1.38797 * 120.00133 * 180.02562 * 17 16 15 20 20 N 1.31623 * 120.00014 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99881 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47026 * 59.99961 * 21 19 17 23 23 H 1.48502 * 109.46837 * 179.97438 * 21 19 17 24 24 H 1.48491 * 109.47376 * 299.99909 * 21 19 17 25 25 C 1.47426 * 108.70046 * 358.94247 * 12 11 9 26 26 C 1.55119 * 104.94409 * 23.99937 * 25 12 11 27 27 H 1.09003 * 111.16791 * 205.13364 * 26 25 12 28 28 O 1.42899 * 110.93536 * 81.21610 * 26 25 12 29 29 H 4.44649 * 5.63361 * 179.97438 * 4 1 2 30 30 H 1.09002 * 109.47178 * 273.27703 * 3 2 1 31 31 H 1.09001 * 109.46629 * 153.28003 * 3 2 1 32 32 H 1.09002 * 109.47103 * 59.99614 * 4 3 2 33 33 H 1.08998 * 109.46862 * 300.00426 * 4 3 2 34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 3 35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 3 36 36 H 0.96995 * 120.00011 * 0.02562 * 8 6 5 37 37 H 1.09005 * 109.87987 * 338.86871 * 11 9 8 38 38 H 1.09005 * 109.88430 * 100.02382 * 11 9 8 39 39 H 1.09002 * 109.46800 * 299.99318 * 15 13 12 40 40 H 1.09000 * 109.47633 * 59.99467 * 15 13 12 41 41 H 0.97006 * 120.00549 * 179.97438 * 20 19 17 42 42 H 1.08988 * 110.36956 * 142.96717 * 25 12 11 43 43 H 1.09003 * 110.36268 * 265.17827 * 25 12 11 44 44 H 0.96703 * 114.00171 * 67.96279 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.2049 -0.7915 5 6 4.6866 -1.2039 -0.7920 6 6 5.1895 -2.3918 -1.5711 7 8 4.4017 -3.1630 -2.0766 8 7 6.5147 -2.5965 -1.7070 9 6 7.0036 -3.7509 -2.4648 10 1 6.3370 -3.9740 -3.2979 11 6 7.1597 -4.9809 -1.5460 12 7 8.3899 -5.6760 -1.9523 13 6 8.8885 -6.7896 -1.3799 14 8 8.3104 -7.3018 -0.4448 15 6 10.1651 -7.3978 -1.9009 16 16 10.5711 -8.8714 -0.9314 17 6 12.0607 -9.3642 -1.7329 18 1 12.4440 -8.7879 -2.5621 19 6 12.7417 -10.4930 -1.2988 20 7 12.2750 -11.1951 -0.2880 21 14 14.3208 -11.0158 -2.1491 22 1 15.3250 -9.9273 -2.0409 23 1 14.8494 -12.2426 -1.5003 24 1 14.0434 -11.2929 -3.5813 25 6 8.9872 -4.9536 -3.0902 26 6 8.4496 -3.5036 -2.9701 27 1 8.4449 -3.0040 -3.9389 28 8 9.2052 -2.7564 -2.0146 29 1 -1.0498 -0.0004 -0.0001 30 1 3.0093 -0.0579 1.0260 31 1 3.0088 0.9188 -0.4621 32 1 2.7932 -1.1463 -1.8175 33 1 2.7937 -2.1230 -0.3295 34 1 5.0503 -1.2622 0.2339 35 1 5.0491 -0.2857 -1.2543 36 1 7.1447 -1.9794 -1.3030 37 1 7.2410 -4.6599 -0.5075 38 1 6.3027 -5.6439 -1.6652 39 1 10.0349 -7.6752 -2.9470 40 1 10.9745 -6.6727 -1.8154 41 1 12.7506 -11.9842 0.0152 42 1 10.0746 -4.9634 -3.0171 43 1 8.6671 -5.3988 -4.0323 44 1 10.1157 -2.5771 -2.2865 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001289607803.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:47 Heat of formation + Delta-G solvation = -101.739406 kcal Electronic energy + Delta-G solvation = -26004.714067 eV Core-core repulsion = 22048.426738 eV Total energy + Delta-G solvation = -3956.287328 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.56177 -40.52714 -39.06257 -36.54276 -36.25732 -35.32807 -34.58912 -33.27375 -31.97922 -30.28314 -29.50259 -28.29388 -27.63164 -24.83076 -23.45785 -21.94897 -21.38757 -20.77152 -19.73304 -19.13364 -18.58490 -18.28029 -17.74580 -17.21752 -16.90502 -16.88199 -16.77011 -16.37338 -15.80633 -15.69486 -15.38416 -15.18513 -14.93496 -14.55149 -14.51160 -14.23816 -14.01128 -13.61215 -13.51547 -13.39874 -13.25000 -13.15555 -12.86211 -12.66483 -12.60082 -12.50268 -12.24827 -11.92335 -11.76678 -11.41388 -11.18407 -11.12791 -10.96281 -10.92055 -10.88662 -10.29081 -10.19822 -9.75808 -8.69788 -8.34405 -6.14183 1.19708 1.42926 1.44806 1.50731 1.54164 1.62209 1.82038 1.93073 1.94789 2.26900 2.29135 2.98708 2.99859 3.22744 3.37379 3.51476 3.53784 3.77403 3.85062 3.95496 4.07911 4.10715 4.18593 4.22051 4.40085 4.48946 4.52533 4.54498 4.63264 4.68244 4.69656 4.77400 4.82628 4.88788 5.17127 5.21381 5.22236 5.32418 5.40977 5.43506 6.19170 6.29217 6.56730 6.72745 6.86269 7.05011 7.06363 7.26781 8.74694 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027644 B = 0.001778 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.640126 B =15748.533811 C =16396.393807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.216 4.216 3 C -0.011 4.011 4 C -0.096 4.096 5 C -0.131 4.131 6 C 0.506 3.494 7 O -0.587 6.587 8 N -0.702 5.702 9 C 0.149 3.851 10 H 0.116 0.884 11 C 0.101 3.899 12 N -0.609 5.609 13 C 0.544 3.456 14 O -0.572 6.572 15 C -0.115 4.115 16 S -0.157 6.157 17 C -0.546 4.546 18 H 0.086 0.914 19 C 0.013 3.987 20 N -0.913 5.913 21 Si 1.001 2.999 22 H -0.260 1.260 23 H -0.281 1.281 24 H -0.261 1.261 25 C 0.056 3.944 26 C 0.107 3.893 27 H 0.132 0.868 28 O -0.567 6.567 29 H 0.237 0.763 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.119 0.881 35 H 0.133 0.867 36 H 0.423 0.577 37 H 0.054 0.946 38 H 0.047 0.953 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.271 0.729 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.664 30.160 -8.074 32.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.216 4.216 3 C -0.047 4.047 4 C -0.134 4.134 5 C -0.170 4.170 6 C 0.295 3.705 7 O -0.467 6.467 8 N -0.355 5.355 9 C 0.041 3.959 10 H 0.133 0.867 11 C -0.024 4.024 12 N -0.344 5.344 13 C 0.332 3.668 14 O -0.450 6.450 15 C -0.266 4.266 16 S 0.070 5.930 17 C -0.693 4.693 18 H 0.104 0.896 19 C -0.192 4.192 20 N -0.549 5.549 21 Si 0.822 3.178 22 H -0.184 1.184 23 H -0.206 1.206 24 H -0.186 1.186 25 C -0.066 4.066 26 C 0.047 3.953 27 H 0.150 0.850 28 O -0.376 6.376 29 H 0.254 0.746 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.137 0.863 35 H 0.151 0.849 36 H 0.262 0.738 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.080 0.920 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -12.553 28.654 -6.582 31.968 hybrid contribution 1.689 -0.375 -1.098 2.049 sum -10.864 28.279 -7.679 31.252 Atomic orbital electron populations 1.25709 0.97163 1.00464 1.00774 1.23887 0.95936 1.00929 1.00829 1.18867 0.83585 0.99604 1.02651 1.21185 0.94072 0.97593 1.00571 1.21707 0.96064 0.96696 1.02522 1.21515 0.81911 0.87313 0.79777 1.90728 1.56438 1.49232 1.50269 1.45713 1.07185 1.27554 1.55080 1.21959 0.95331 0.84652 0.93909 0.86656 1.22295 0.86414 0.94243 0.99444 1.48220 1.25690 1.25809 1.34722 1.19940 0.85619 0.79348 0.81890 1.90695 1.61891 1.62275 1.30176 1.23269 0.97366 1.01569 1.04393 1.85712 1.32166 1.28784 1.46317 1.23160 1.09787 1.15516 1.20859 0.89581 1.26162 1.02210 0.95160 0.95625 1.70188 1.40925 1.17296 1.26479 0.84975 0.76644 0.77807 0.78382 1.18400 1.20573 1.18570 1.23591 1.00891 0.92790 0.89344 1.23192 0.88528 0.89625 0.93989 0.85033 1.86333 1.30091 1.74535 1.46685 0.74608 0.87878 0.87131 0.92372 0.93395 0.86278 0.84945 0.73789 0.92756 0.93495 0.87216 0.86954 0.92007 0.87906 0.88030 0.74040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.35 19.25 74.32 1.43 -1.92 16 2 C -0.22 -3.43 13.34 31.12 0.42 -3.02 16 3 C -0.01 -0.10 5.70 28.79 0.16 0.06 16 4 C -0.10 -1.28 4.46 30.59 0.14 -1.15 16 5 C -0.13 -1.13 5.70 29.85 0.17 -0.96 16 6 C 0.51 8.75 7.83 87.66 0.69 9.44 16 7 O -0.59 -16.02 15.67 -3.03 -0.05 -16.07 16 8 N -0.70 -9.80 5.08 -436.92 -2.22 -12.02 16 9 C 0.15 2.49 3.15 46.18 0.15 2.64 16 10 H 0.12 2.02 7.62 -2.39 -0.02 2.00 16 11 C 0.10 2.72 6.62 86.73 0.57 3.29 16 12 N -0.61 -17.22 3.33 -811.39 -2.70 -19.92 16 13 C 0.54 21.68 7.87 87.66 0.69 22.37 16 14 O -0.57 -28.99 16.19 -3.02 -0.05 -29.04 16 15 C -0.11 -4.61 5.16 71.23 0.37 -4.24 16 16 S -0.16 -8.85 20.57 -56.49 -1.16 -10.01 16 17 C -0.55 -30.93 9.50 67.95 0.65 -30.28 16 18 H 0.09 4.45 7.80 -2.91 -0.02 4.43 16 19 C 0.01 0.74 5.49 84.86 0.47 1.21 16 20 N -0.91 -56.29 13.22 21.65 0.29 -56.00 16 21 Si 1.00 43.01 29.55 68.60 2.03 45.03 16 22 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 23 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 25 C 0.06 0.86 6.43 86.93 0.56 1.42 16 26 C 0.11 1.04 4.31 32.06 0.14 1.18 16 27 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 28 O -0.57 -5.26 12.23 -148.98 -1.82 -7.08 16 29 H 0.24 1.94 7.80 -4.43 -0.03 1.91 16 30 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 33 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 34 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.42 4.03 7.58 -92.71 -0.70 3.33 16 37 H 0.05 1.65 8.03 -2.38 -0.02 1.63 16 38 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 40 H 0.11 3.95 7.85 -2.40 -0.02 3.93 16 41 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 42 H 0.10 1.34 7.48 -2.39 -0.02 1.33 16 43 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.41 0.57 9.12 -74.06 -0.68 -0.11 16 Total: -1.00 -92.42 394.90 0.55 -91.87 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -0.35 Total: 13.20 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 6.59 Total: 0.03 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -4.63 Total: -87.94 kcal Atomic # 8 Polarization: -50.27 SS G_CDS: -1.92 Total: -52.19 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.16 Total: -10.01 kcal Total: -92.42 0.55 -91.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001289607803.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.872 kcal (2) G-P(sol) polarization free energy of solvation -92.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds