Wall clock time and date at job start Sat Apr 11 2020 05:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47239 * 2 1 4 4 H 1.09006 * 109.47041 * 55.00150 * 3 2 1 5 5 C 1.52998 * 109.47123 * 175.00303 * 3 2 1 6 6 N 1.46506 * 109.47014 * 175.00202 * 5 3 2 7 7 C 1.34779 * 119.99677 * 180.02562 * 6 5 3 8 8 O 1.21690 * 120.00230 * 359.97438 * 7 6 5 9 9 C 1.46659 * 119.99553 * 179.97438 * 7 6 5 10 10 O 1.34911 * 125.99073 * 0.02689 * 9 7 6 11 11 C 1.33926 * 109.38448 * 179.97438 * 10 9 7 12 12 C 1.35132 * 108.76759 * 359.72933 * 11 10 9 13 13 C 1.36546 * 125.98514 * 179.97438 * 9 7 6 14 14 C 1.50703 * 126.64582 * 0.02562 * 13 9 7 15 15 N 1.46504 * 109.47438 * 295.00548 * 3 2 1 16 16 C 1.34771 * 120.00006 * 84.99542 * 15 3 2 17 17 O 1.21281 * 120.00284 * 0.02562 * 16 15 3 18 18 C 1.50710 * 119.99845 * 180.02562 * 16 15 3 19 19 S 1.80996 * 109.47050 * 180.02562 * 18 16 15 20 20 C 1.76195 * 100.00032 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00013 * 359.97438 * 20 19 18 22 22 C 1.38800 * 120.00324 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99479 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00177 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47164 * 59.99536 * 24 22 20 26 26 H 1.48497 * 109.47190 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46985 * 299.99298 * 24 22 20 28 28 H 1.09002 * 109.46868 * 299.99658 * 1 2 3 29 29 H 1.08998 * 109.47373 * 59.99773 * 1 2 3 30 30 H 1.08999 * 109.47275 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46868 * 240.00342 * 2 1 3 32 32 H 1.08998 * 109.47373 * 120.00227 * 2 1 3 33 33 H 1.08996 * 109.47255 * 55.00306 * 5 3 2 34 34 H 1.08997 * 109.47050 * 295.00150 * 5 3 2 35 35 H 0.97000 * 120.00123 * 359.97438 * 6 5 3 36 36 H 1.08006 * 125.61757 * 180.02562 * 11 10 9 37 37 H 1.07998 * 126.44106 * 180.29359 * 12 11 10 38 38 H 1.09002 * 109.47152 * 89.99925 * 14 13 9 39 39 H 1.09001 * 109.46980 * 330.00025 * 14 13 9 40 40 H 1.09004 * 109.47113 * 210.00006 * 14 13 9 41 41 H 0.96999 * 119.99297 * 265.00210 * 15 3 2 42 42 H 1.09004 * 109.46648 * 300.00293 * 18 16 15 43 43 H 1.08998 * 109.46859 * 60.00389 * 18 16 15 44 44 H 0.97003 * 119.99308 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1256 6 7 4.0631 2.8168 0.0059 7 6 5.3858 3.0628 0.0857 8 8 6.1662 2.1451 0.2577 9 6 5.8846 4.4368 -0.0347 10 8 5.1315 5.5397 -0.2257 11 6 5.9265 6.6157 -0.2863 12 6 7.2085 6.2186 -0.1285 13 6 7.1925 4.8238 0.0278 14 6 8.3870 3.9278 0.2314 15 7 1.6524 2.0976 -1.2518 16 6 0.4351 2.6644 -1.3668 17 8 -0.3393 2.6327 -0.4339 18 6 0.0362 3.3379 -2.6547 19 16 -1.6422 3.9967 -2.4963 20 6 -1.8439 4.7078 -4.0957 21 1 -1.0438 4.6469 -4.8186 22 6 -3.0307 5.3471 -4.4264 23 7 -4.0057 5.4217 -3.5451 24 14 -3.2449 6.1003 -6.1223 25 1 -3.1077 5.0420 -7.1549 26 1 -4.5915 6.7180 -6.2231 27 1 -2.2059 7.1394 -6.3372 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.9954 0.8311 -0.6660 34 1 3.8499 1.0376 1.0959 35 1 3.4411 3.5483 -0.1315 36 1 5.5969 7.6339 -0.4322 37 1 8.0813 6.8546 -0.1252 38 1 8.7589 3.5925 -0.7368 39 1 8.0953 3.0633 0.8277 40 1 9.1708 4.4795 0.7505 41 1 2.2719 2.1232 -1.9977 42 1 0.7276 4.1531 -2.8677 43 1 0.0671 2.6132 -3.4683 44 1 -4.8350 5.8688 -3.7761 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297354346.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:56 Heat of formation + Delta-G solvation = -69.717078 kcal Electronic energy + Delta-G solvation = -26715.130707 eV Core-core repulsion = 22760.231971 eV Total energy + Delta-G solvation = -3954.898736 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.00011 -40.13562 -39.29842 -36.57272 -34.65899 -33.90084 -32.46952 -32.43440 -30.91944 -29.52634 -28.57143 -27.44662 -25.50842 -24.13970 -22.63766 -21.53506 -21.39970 -20.41447 -20.15472 -18.52968 -17.81226 -16.83497 -16.59366 -16.48539 -16.37772 -15.85129 -15.29499 -15.05082 -14.82761 -14.54751 -14.21108 -13.81056 -13.59061 -13.50616 -13.39044 -13.30167 -13.14965 -13.06454 -12.84646 -12.54097 -12.32764 -12.11287 -11.78918 -11.49087 -11.24741 -11.06538 -11.06016 -10.82007 -10.77271 -10.43399 -10.02506 -9.84873 -9.56024 -9.40252 -9.08855 -8.93865 -8.88081 -8.27679 -6.52942 -6.24394 -3.95003 0.75322 2.02442 2.38762 2.85183 2.87481 2.99023 3.05072 3.21353 3.25535 3.28644 3.66069 4.17969 4.33187 4.37677 4.45097 4.59309 4.84222 4.98433 5.10042 5.10967 5.15776 5.20553 5.20707 5.32644 5.41249 5.42428 5.46196 5.57759 5.72747 5.74595 5.80322 5.83182 5.86559 5.97876 6.04533 6.10361 6.13018 6.21270 6.52686 6.54562 6.61368 7.14030 7.56585 7.62062 7.76232 8.32257 8.54762 9.21072 10.82906 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010416 B = 0.002761 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.415265 B =10138.687236 C =12333.174673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C 0.134 3.866 4 H 0.097 0.903 5 C 0.113 3.887 6 N -0.718 5.718 7 C 0.605 3.395 8 O -0.521 6.521 9 C -0.091 4.091 10 O -0.161 6.161 11 C 0.004 3.996 12 C -0.229 4.229 13 C -0.085 4.085 14 C -0.095 4.095 15 N -0.737 5.737 16 C 0.533 3.467 17 O -0.508 6.508 18 C -0.155 4.155 19 S -0.057 6.057 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.410 0.590 36 H 0.212 0.788 37 H 0.156 0.844 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.398 0.602 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.568 -3.739 7.356 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.028 3.972 4 H 0.115 0.885 5 C -0.011 4.011 6 N -0.370 5.370 7 C 0.392 3.608 8 O -0.399 6.399 9 C -0.143 4.143 10 O -0.056 6.056 11 C -0.066 4.066 12 C -0.248 4.248 13 C -0.088 4.088 14 C -0.151 4.151 15 N -0.392 5.392 16 C 0.320 3.680 17 O -0.381 6.381 18 C -0.306 4.306 19 S 0.169 5.831 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.246 0.754 36 H 0.228 0.772 37 H 0.174 0.826 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.232 0.768 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 21.282 -4.435 9.074 23.557 hybrid contribution 0.893 1.178 -2.699 3.077 sum 22.175 -3.257 6.376 23.302 Atomic orbital electron populations 1.21805 0.93951 1.00756 1.03885 1.21875 0.97860 0.94798 1.02248 1.21255 0.92114 0.94878 0.88910 0.88528 1.21770 0.93051 0.82776 1.03509 1.45903 1.07112 1.10669 1.73314 1.16494 0.82443 0.84864 0.76963 1.90846 1.55990 1.42910 1.50194 1.21794 0.90307 0.86805 1.15383 1.84099 1.37281 1.14660 1.69537 1.24450 0.89303 0.91359 1.01511 1.21761 0.98281 0.94746 1.10049 1.20655 0.94196 0.94508 0.99476 1.20431 0.93367 0.98533 1.02797 1.46127 1.17494 1.59509 1.16093 1.20261 0.80749 0.77421 0.89615 1.90721 1.50268 1.57118 1.40028 1.23552 1.07089 1.02832 0.97101 1.85366 1.06381 1.70856 1.20452 1.22825 1.03955 1.42185 0.99529 0.91028 1.24984 0.94835 0.95547 0.98166 1.70006 1.05054 1.40924 1.34297 0.86234 0.77533 0.79263 0.82539 1.19945 1.20801 1.19939 0.91986 0.91720 0.93540 0.91641 0.91108 0.90386 0.89603 0.75364 0.77169 0.82619 0.90770 0.89508 0.91471 0.76772 0.89333 0.89313 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.52 37.16 0.32 -1.61 16 2 C -0.13 -1.28 5.61 -26.73 -0.15 -1.43 16 3 C 0.13 1.37 2.42 -67.93 -0.16 1.21 16 4 H 0.10 1.16 7.58 -51.93 -0.39 0.76 16 5 C 0.11 1.00 5.23 -4.04 -0.02 0.98 16 6 N -0.72 -7.15 5.38 -61.62 -0.33 -7.49 16 7 C 0.61 7.05 7.79 -12.86 -0.10 6.95 16 8 O -0.52 -7.02 14.74 5.20 0.08 -6.94 16 9 C -0.09 -1.02 7.13 -36.80 -0.26 -1.28 16 10 O -0.16 -1.69 10.40 5.02 0.05 -1.64 16 11 C 0.00 0.03 12.08 29.63 0.36 0.39 16 12 C -0.23 -1.86 10.83 -39.89 -0.43 -2.29 16 13 C -0.09 -0.86 6.20 -104.43 -0.65 -1.51 16 14 C -0.09 -0.82 9.82 36.01 0.35 -0.47 16 15 N -0.74 -8.65 4.47 -53.80 -0.24 -8.89 16 16 C 0.53 8.94 6.42 -10.98 -0.07 8.87 16 17 O -0.51 -10.24 13.00 5.56 0.07 -10.17 16 18 C -0.16 -2.96 6.16 36.01 0.22 -2.74 16 19 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 20 C -0.54 -14.99 9.50 30.94 0.29 -14.70 16 21 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -25.80 13.22 55.49 0.73 -25.07 16 24 Si 0.92 21.14 29.55 -169.99 -5.02 16.11 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 H 0.06 0.89 7.85 -51.93 -0.41 0.48 16 29 H 0.06 1.03 5.65 -51.93 -0.29 0.74 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.41 4.11 7.89 -40.82 -0.32 3.78 16 36 H 0.21 0.85 8.06 -52.48 -0.42 0.43 16 37 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.88 6.44 -51.93 -0.33 0.54 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.40 3.87 8.60 -40.82 -0.35 3.52 16 42 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 43 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 44 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 385.35 15.07 5.81 5.81 Total: -1.00 -34.54 385.35 -7.76 -42.30 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.30 Total: 5.32 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -0.40 Total: -5.64 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.16 Total: -41.44 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: 0.20 Total: -18.75 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.54 -7.76 -42.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297354346.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.412 kcal (2) G-P(sol) polarization free energy of solvation -34.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds