Wall clock time and date at job start Sat Apr 11 2020 05:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47478 * 2 1 4 4 C 1.53008 * 109.47119 * 120.00197 * 2 1 3 5 5 N 1.46500 * 109.47265 * 174.13715 * 4 2 1 6 6 C 1.46506 * 119.99786 * 276.12864 * 5 4 2 7 7 C 1.50695 * 109.46585 * 274.64911 * 6 5 4 8 8 H 1.08001 * 120.00918 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99737 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99617 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00156 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46873 * 60.00366 * 11 9 7 13 13 H 1.48501 * 109.47077 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47467 * 300.00326 * 11 9 7 15 15 C 1.34778 * 119.99660 * 96.12604 * 5 4 2 16 16 O 1.21680 * 120.00465 * 4.66362 * 15 5 4 17 17 C 1.46679 * 119.99293 * 184.66189 * 15 5 4 18 18 C 1.35667 * 126.13743 * 334.96345 * 17 15 5 19 19 N 1.30934 * 114.19484 * 180.24813 * 18 17 15 20 20 C 1.29436 * 117.36349 * 359.48905 * 19 18 17 21 21 C 1.50697 * 124.80398 * 180.19515 * 20 19 18 22 22 O 1.43757 * 109.63155 * 149.70476 * 21 20 19 23 23 C 1.44793 * 104.81528 * 215.80868 * 22 21 20 24 24 C 1.54914 * 101.71880 * 36.10134 * 23 22 21 25 25 O 1.43373 * 109.63247 * 30.34099 * 21 20 19 26 26 S 1.70953 * 110.39082 * 0.49411 * 20 19 18 27 27 H 1.09001 * 109.46813 * 300.00232 * 1 2 3 28 28 H 1.08998 * 109.46646 * 59.99828 * 1 2 3 29 29 H 1.08997 * 109.47036 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47191 * 239.99570 * 2 1 3 31 31 H 1.09008 * 109.47289 * 66.02785 * 3 2 1 32 32 H 1.09001 * 109.47569 * 186.02415 * 3 2 1 33 33 H 1.08999 * 109.47105 * 306.02868 * 3 2 1 34 34 H 1.09000 * 109.46690 * 54.13394 * 4 2 1 35 35 H 1.09000 * 109.46992 * 294.13825 * 4 2 1 36 36 H 1.08996 * 109.46820 * 34.65231 * 6 5 4 37 37 H 1.08996 * 109.46857 * 154.65120 * 6 5 4 38 38 H 0.97006 * 119.99724 * 179.97438 * 10 9 7 39 39 H 1.08000 * 122.89629 * 359.97438 * 18 17 15 40 40 H 1.08994 * 109.62902 * 269.94677 * 21 20 19 41 41 H 1.08997 * 110.97496 * 277.99742 * 23 22 21 42 42 H 1.08997 * 110.97756 * 154.21029 * 23 22 21 43 43 H 1.08998 * 110.69113 * 206.04010 * 24 23 22 44 44 H 1.09002 * 110.84299 * 82.90915 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.4982 -0.8447 1.1808 6 6 4.1056 -1.9510 0.4368 7 6 4.1967 -3.1642 1.3261 8 1 3.8378 -3.1162 2.3435 9 6 4.7384 -4.3356 0.8407 10 7 5.1760 -4.3938 -0.3981 11 14 4.8521 -5.8392 1.9432 12 1 3.4904 -6.2309 2.3879 13 1 5.4687 -6.9602 1.1893 14 1 5.6878 -5.5217 3.1288 15 6 4.2809 0.0595 1.8024 16 8 3.7785 0.9286 2.4901 17 6 5.7383 -0.0041 1.6497 18 6 6.4637 -1.1104 1.3486 19 7 7.7542 -0.9020 1.2742 20 6 8.1749 0.3045 1.4807 21 6 9.6192 0.7318 1.4325 22 8 9.7036 2.1014 1.0037 23 6 10.9037 2.1632 0.1960 24 6 10.8793 0.7845 -0.5099 25 8 10.3336 -0.0892 0.4991 26 16 6.8611 1.3429 1.8241 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.7676 1.9242 0.9391 32 1 3.1247 1.4443 -0.1078 33 1 1.5913 1.9865 -0.8311 34 1 1.5934 -1.7142 1.3032 35 1 1.7649 -0.1505 2.1362 36 1 3.4920 -2.1836 -0.4335 37 1 5.1051 -1.6638 0.1104 38 1 5.5574 -5.2178 -0.7395 39 1 6.0157 -2.0800 1.1887 40 1 10.0638 0.6324 2.4226 41 1 11.7903 2.2655 0.8217 42 1 10.8443 2.9743 -0.5297 43 1 11.8876 0.4741 -0.7839 44 1 10.2336 0.8097 -1.3878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361685877.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:09 Heat of formation + Delta-G solvation = -61.825253 kcal Electronic energy + Delta-G solvation = -28118.594723 eV Core-core repulsion = 24164.038202 eV Total energy + Delta-G solvation = -3954.556521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.62045 -39.78950 -38.47644 -35.96349 -35.23853 -34.36876 -32.43600 -31.52662 -29.58462 -27.65401 -26.95801 -26.80795 -25.25268 -23.60849 -23.48320 -22.87485 -20.87674 -19.66697 -18.98482 -17.87110 -17.33305 -16.78826 -16.66724 -16.27768 -15.64272 -15.43683 -14.90564 -14.72190 -14.51099 -14.22998 -14.14724 -13.86657 -13.59003 -13.43856 -13.11454 -12.89735 -12.83089 -12.44826 -12.24849 -11.94467 -11.80275 -11.59191 -11.36217 -11.07591 -10.93663 -10.88790 -10.61769 -10.58748 -10.45562 -10.30449 -10.14144 -10.05042 -9.81002 -9.58266 -9.01819 -8.97062 -8.70502 -8.35289 -7.78175 -6.28082 -4.38757 0.71227 1.51092 2.08876 3.00057 3.14524 3.23130 3.28426 3.31107 3.69977 3.80179 3.94250 4.28268 4.30186 4.48080 4.68886 4.83761 5.03502 5.06011 5.18127 5.21244 5.27154 5.32948 5.42324 5.47905 5.55248 5.63016 5.87507 5.92244 5.99519 6.02388 6.14417 6.26999 6.33425 6.38001 6.59119 6.66363 6.75242 6.75817 6.97469 7.09847 7.42834 7.66540 7.90916 8.14720 8.20628 8.67446 8.87441 9.30055 10.76542 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009256 B = 0.004534 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3024.425163 B = 6173.971857 C = 8369.506600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.137 4.137 4 C 0.125 3.875 5 N -0.577 5.577 6 C 0.213 3.787 7 C -0.551 4.551 8 H 0.065 0.935 9 C 0.070 3.930 10 N -0.880 5.880 11 Si 0.898 3.102 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.273 1.273 15 C 0.593 3.407 16 O -0.566 6.566 17 C -0.282 4.282 18 C 0.083 3.917 19 N -0.441 5.441 20 C -0.011 4.011 21 C 0.320 3.680 22 O -0.373 6.373 23 C 0.019 3.981 24 C 0.016 3.984 25 O -0.353 6.353 26 S 0.212 5.788 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.056 0.944 38 H 0.270 0.730 39 H 0.242 0.758 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.113 0.887 43 H 0.104 0.896 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.494 11.612 -1.221 13.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.194 4.194 4 C 0.001 3.999 5 N -0.306 5.306 6 C 0.093 3.907 7 C -0.589 4.589 8 H 0.084 0.916 9 C -0.135 4.135 10 N -0.516 5.516 11 Si 0.725 3.275 12 H -0.200 1.200 13 H -0.209 1.209 14 H -0.198 1.198 15 C 0.380 3.620 16 O -0.448 6.448 17 C -0.406 4.406 18 C -0.072 4.072 19 N -0.157 5.157 20 C -0.286 4.286 21 C 0.221 3.779 22 O -0.293 6.293 23 C -0.058 4.058 24 C -0.060 4.060 25 O -0.273 6.273 26 S 0.468 5.532 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.257 0.743 40 H 0.131 0.869 41 H 0.100 0.900 42 H 0.131 0.869 43 H 0.122 0.878 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.537 12.561 -0.848 14.185 hybrid contribution -0.133 -1.870 0.178 1.883 sum 6.404 10.691 -0.670 12.480 Atomic orbital electron populations 1.21741 0.95047 1.01669 1.01400 1.21506 0.95440 0.96794 0.99522 1.21750 1.00837 0.95707 1.01155 1.21449 0.79924 1.00885 0.97599 1.47927 1.05726 1.26631 1.50344 1.20091 0.95444 0.83060 0.92094 1.21431 1.42586 0.95577 0.99326 0.91632 1.24985 0.94531 0.98829 0.95167 1.69911 1.38925 1.28305 1.14444 0.86527 0.78621 0.81709 0.80620 1.19980 1.20934 1.19795 1.16655 0.83843 0.81710 0.79776 1.90725 1.75205 1.37711 1.41137 1.25954 0.99956 0.97748 1.16896 1.24416 0.85976 1.02948 0.93861 1.66198 1.16001 1.18851 1.14619 1.27510 1.00528 0.94110 1.06477 1.22059 0.85339 0.76204 0.94311 1.89257 1.44825 1.25604 1.69567 1.24475 0.88092 0.99068 0.94133 1.24291 1.00566 0.88539 0.92624 1.89087 1.69526 1.30753 1.37890 1.83699 0.95940 1.11251 1.62346 0.92790 0.92908 0.92546 0.90895 0.92396 0.93276 0.93614 0.90183 0.90374 0.94338 0.92649 0.92004 0.74299 0.86856 0.90042 0.86901 0.87752 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.19 37.16 0.34 -1.47 16 2 C -0.11 -1.80 3.11 -90.62 -0.28 -2.08 16 3 C -0.14 -2.19 8.21 37.15 0.31 -1.89 16 4 C 0.12 2.30 4.98 -4.04 -0.02 2.28 16 5 N -0.58 -12.30 2.27 -176.60 -0.40 -12.70 16 6 C 0.21 4.99 4.69 -5.19 -0.02 4.97 16 7 C -0.55 -13.89 7.66 -34.44 -0.26 -14.15 16 8 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.07 1.80 5.25 -17.82 -0.09 1.71 16 10 N -0.88 -23.51 13.29 55.43 0.74 -22.78 16 11 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 15 C 0.59 13.05 6.35 -12.85 -0.08 12.97 16 16 O -0.57 -12.96 15.98 5.21 0.08 -12.87 16 17 C -0.28 -5.99 6.13 -37.10 -0.23 -6.21 16 18 C 0.08 1.86 9.13 -18.85 -0.17 1.68 16 19 N -0.44 -9.36 10.33 -11.50 -0.12 -9.48 16 20 C -0.01 -0.19 6.95 -13.29 -0.09 -0.29 16 21 C 0.32 4.57 4.56 36.00 0.16 4.73 16 22 O -0.37 -4.63 10.94 -59.04 -0.65 -5.28 16 23 C 0.02 0.15 7.95 38.17 0.30 0.45 16 24 C 0.02 0.16 8.07 38.17 0.31 0.47 16 25 O -0.35 -5.20 11.07 -59.04 -0.65 -5.85 16 26 S 0.21 3.75 22.67 -107.50 -2.44 1.32 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.23 7.98 -51.92 -0.41 0.82 16 31 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 32 H 0.05 0.88 7.09 -51.93 -0.37 0.51 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 1.46 8.12 -51.93 -0.42 1.04 16 35 H 0.08 1.45 7.19 -51.93 -0.37 1.08 16 36 H 0.04 0.94 7.94 -51.93 -0.41 0.53 16 37 H 0.06 1.37 4.32 -51.93 -0.22 1.15 16 38 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.24 5.94 3.52 -52.49 -0.18 5.76 16 40 H 0.11 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -30.14 373.36 -8.84 -38.98 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -6.17 Total: 4.58 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 0.17 Total: 3.17 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.22 Total: -44.96 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -1.22 Total: -24.01 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -2.44 Total: 1.32 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.14 -8.84 -38.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361685877.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.845 kcal (2) G-P(sol) polarization free energy of solvation -30.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds