Wall clock time and date at job start Sat Apr 11 2020 05:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47277 * 2 1 4 4 C 1.52995 * 109.46919 * 120.00771 * 2 1 3 5 5 C 1.53002 * 109.47683 * 54.99387 * 4 2 1 6 6 N 1.46499 * 109.47101 * 174.99539 * 4 2 1 7 7 S 1.65603 * 119.99927 * 188.00149 * 6 4 2 8 8 O 1.42104 * 106.39879 * 179.45305 * 7 6 4 9 9 O 1.42101 * 106.40261 * 46.53602 * 7 6 4 10 10 C 1.76196 * 107.21880 * 292.99118 * 7 6 4 11 11 C 1.37643 * 120.12450 * 113.01817 * 10 7 6 12 12 C 1.38610 * 120.24783 * 180.29864 * 11 10 7 13 13 C 1.38658 * 120.49998 * 359.44394 * 12 11 10 14 14 C 1.37594 * 120.24661 * 0.55315 * 13 12 11 15 15 C 1.40696 * 120.13443 * 293.03591 * 10 7 6 16 16 C 1.41400 * 120.23787 * 359.96110 * 15 10 7 17 17 H 1.07999 * 120.00378 * 333.83491 * 16 15 10 18 18 C 1.39945 * 120.00010 * 153.84145 * 16 15 10 19 19 N 1.30816 * 120.00554 * 170.52112 * 18 16 15 20 20 Si 1.86808 * 119.99842 * 350.51753 * 18 16 15 21 21 H 1.48503 * 109.47023 * 94.36917 * 20 18 16 22 22 H 1.48499 * 109.47230 * 214.36802 * 20 18 16 23 23 H 1.48500 * 109.47079 * 334.36661 * 20 18 16 24 24 C 1.50699 * 109.47124 * 294.99442 * 4 2 1 25 25 N 1.34782 * 120.00386 * 280.02322 * 24 4 2 26 26 O 1.21283 * 120.00149 * 100.01608 * 24 4 2 27 27 H 1.09004 * 109.47048 * 300.00039 * 1 2 3 28 28 H 1.08998 * 109.47333 * 59.99497 * 1 2 3 29 29 H 1.08995 * 109.47589 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46541 * 239.99842 * 2 1 3 31 31 H 1.08996 * 109.47711 * 300.00108 * 3 2 1 32 32 H 1.08998 * 109.47086 * 60.00723 * 3 2 1 33 33 H 1.09006 * 109.46998 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47362 * 189.36440 * 5 4 2 35 35 H 1.08996 * 109.46964 * 309.36677 * 5 4 2 36 36 H 1.08997 * 109.46786 * 69.36584 * 5 4 2 37 37 H 0.97004 * 120.00169 * 8.00795 * 6 4 2 38 38 H 1.07998 * 119.87456 * 0.02562 * 11 10 7 39 39 H 1.08002 * 119.75244 * 179.70198 * 12 11 10 40 40 H 1.08000 * 119.87549 * 180.30461 * 13 12 11 41 41 H 1.08005 * 120.12504 * 179.75128 * 14 13 12 42 42 H 0.96996 * 120.00567 * 180.02562 * 19 18 16 43 43 H 0.97007 * 119.99174 * 359.97438 * 25 24 4 44 44 H 0.96989 * 120.00434 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 1.2491 5 6 1.4298 -2.1230 1.3136 6 7 3.5000 -0.8266 1.1904 7 16 4.3104 -1.7355 2.3128 8 8 5.6892 -1.6472 1.9805 9 8 3.6119 -2.9691 2.4104 10 6 4.1213 -0.9320 3.8695 11 6 3.3905 -1.5296 4.8711 12 6 3.2349 -0.8971 6.0946 13 6 3.8217 0.3373 6.3282 14 6 4.5567 0.9533 5.3415 15 6 4.7165 0.3231 4.0934 16 6 5.4699 0.9464 3.0720 17 1 5.9484 0.3470 2.3117 18 6 5.5956 2.3399 3.0464 19 7 6.4370 2.9058 2.2200 20 14 4.5615 3.3922 4.1924 21 1 5.3340 3.6864 5.4261 22 1 4.2097 4.6650 3.5132 23 1 3.3188 2.6615 4.5489 24 6 1.6414 0.0568 2.4765 25 7 2.3545 1.1377 2.8503 26 8 0.6788 -0.2895 3.1281 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6768 1.9563 -0.8899 32 1 1.6768 1.9562 0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6572 -2.5743 2.2793 35 1 0.3490 -2.0548 1.1899 36 1 1.8485 -2.7384 0.5174 37 1 3.9920 -0.3639 0.4942 38 1 2.9328 -2.4931 4.7015 39 1 2.6558 -1.3711 6.8732 40 1 3.6981 0.8189 7.2870 41 1 5.0095 1.9166 5.5242 42 1 6.5244 3.8717 2.2025 43 1 3.1245 1.4145 2.3293 44 1 2.0982 1.6384 3.6404 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363978793.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:20 Heat of formation + Delta-G solvation = -106.176134 kcal Electronic energy + Delta-G solvation = -31226.788915 eV Core-core repulsion = 27270.309195 eV Total energy + Delta-G solvation = -3956.479719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.46923 -39.65617 -38.18932 -37.73324 -36.73919 -35.70940 -34.44046 -34.00453 -32.45992 -31.86801 -30.51061 -27.69564 -27.19394 -25.39824 -23.91064 -23.06107 -22.78454 -20.47907 -20.21343 -19.52839 -18.69942 -18.65484 -18.19499 -17.85610 -17.09976 -16.65432 -16.29048 -15.90643 -15.61532 -15.38480 -15.31922 -15.06684 -14.57748 -14.54272 -14.37773 -14.15380 -13.92407 -13.57873 -13.40979 -13.18671 -13.07907 -12.94886 -12.87594 -12.85865 -12.70273 -12.42961 -12.28032 -12.10385 -12.07120 -11.74509 -11.58443 -11.56531 -11.32646 -11.22808 -10.89074 -10.42336 -10.19721 -9.82292 -9.55527 -8.98362 -6.75184 -0.26247 0.36447 0.81136 1.24725 1.35105 1.42862 1.64558 1.98625 2.26519 2.49221 2.69656 2.92155 3.35391 3.59257 3.75318 3.78531 4.04952 4.09966 4.18697 4.24864 4.29445 4.53773 4.60901 4.62890 4.66287 4.81289 4.89770 4.90503 4.97394 5.06586 5.11165 5.16000 5.21852 5.37046 5.38670 5.44089 5.53940 5.59380 5.68427 5.85837 5.96594 6.06907 6.11328 6.29627 6.53230 6.57191 6.68098 7.41023 8.03591 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011380 B = 0.007709 C = 0.006753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.780818 B = 3631.341031 C = 4145.518086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.082 4.082 3 C -0.170 4.170 4 C 0.169 3.831 5 C -0.166 4.166 6 N -1.095 6.095 7 S 2.710 3.290 8 O -0.999 6.999 9 O -0.993 6.993 10 C -0.779 4.779 11 C 0.012 3.988 12 C -0.249 4.249 13 C -0.036 4.036 14 C -0.255 4.255 15 C 0.169 3.831 16 C -0.480 4.480 17 H 0.102 0.898 18 C 0.060 3.940 19 N -0.807 5.807 20 Si 0.948 3.052 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.222 1.222 24 C 0.513 3.487 25 N -0.831 5.831 26 O -0.570 6.570 27 H 0.042 0.958 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.426 0.574 38 H 0.114 0.886 39 H 0.124 0.876 40 H 0.131 0.869 41 H 0.103 0.897 42 H 0.301 0.699 43 H 0.410 0.590 44 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.183 1.547 -4.254 10.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.102 4.102 3 C -0.228 4.228 4 C 0.077 3.923 5 C -0.224 4.224 6 N -0.856 5.856 7 S 2.807 3.193 8 O -0.989 6.989 9 O -0.983 6.983 10 C -0.873 4.873 11 C -0.008 4.008 12 C -0.269 4.269 13 C -0.054 4.054 14 C -0.274 4.274 15 C 0.165 3.835 16 C -0.507 4.507 17 H 0.120 0.880 18 C -0.161 4.161 19 N -0.429 5.429 20 Si 0.774 3.226 21 H -0.199 1.199 22 H -0.206 1.206 23 H -0.145 1.145 24 C 0.296 3.704 25 N -0.397 5.397 26 O -0.449 6.449 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.131 0.869 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.264 0.736 38 H 0.132 0.868 39 H 0.142 0.858 40 H 0.149 0.851 41 H 0.120 0.880 42 H 0.112 0.888 43 H 0.243 0.757 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -9.252 0.517 -4.223 10.183 hybrid contribution 0.693 1.620 1.023 2.037 sum -8.558 2.136 -3.200 9.383 Atomic orbital electron populations 1.21970 0.92970 1.03246 1.02528 1.21351 0.97444 0.96399 0.95050 1.22193 1.01711 0.95430 1.03446 1.20581 0.79424 0.97184 0.95127 1.22506 1.02557 0.92801 1.04570 1.55430 1.14165 1.69987 1.46039 1.00705 0.71883 0.72931 0.73803 1.93492 1.33763 1.87140 1.84527 1.93469 1.74243 1.43041 1.87583 1.29920 1.22676 1.13508 1.21157 1.20550 0.90722 0.96756 0.92738 1.20834 1.09397 0.98372 0.98307 1.21141 0.92294 0.94136 0.97875 1.21145 1.09013 1.01936 0.95344 1.17050 0.85838 0.88976 0.91683 1.20312 1.25886 0.93424 1.11112 0.88003 1.26783 0.94520 0.99145 0.95657 1.69642 1.27183 1.14527 1.31597 0.85903 0.81760 0.77000 0.77976 1.19944 1.20590 1.14547 1.21033 0.82438 0.80906 0.85985 1.44562 1.33052 1.30411 1.31676 1.90659 1.29574 1.69045 1.55638 0.93918 0.89776 0.90978 0.86883 0.89626 0.92684 0.92198 0.91636 0.89021 0.89894 0.73617 0.86769 0.85789 0.85083 0.87980 0.88752 0.75688 0.77160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.54 71.98 0.61 -2.42 16 2 C -0.08 -1.85 2.35 -10.80 -0.03 -1.87 16 3 C -0.17 -3.78 7.89 71.98 0.57 -3.21 16 4 C 0.17 5.10 0.55 2.86 0.00 5.10 16 5 C -0.17 -5.08 6.48 71.98 0.47 -4.61 16 6 N -1.10 -36.01 4.75 -155.19 -0.74 -36.75 16 7 S 2.71 112.15 5.04 -56.49 -0.28 111.86 16 8 O -1.00 -48.03 15.53 -128.00 -1.99 -50.02 16 9 O -0.99 -42.12 13.35 -128.00 -1.71 -43.83 16 10 C -0.78 -33.71 3.79 22.73 0.09 -33.62 16 11 C 0.01 0.51 9.47 22.22 0.21 0.72 16 12 C -0.25 -9.51 10.05 22.46 0.23 -9.28 16 13 C -0.04 -1.34 10.02 22.22 0.22 -1.12 16 14 C -0.26 -10.52 6.77 22.73 0.15 -10.37 16 15 C 0.17 7.48 3.45 -21.29 -0.07 7.41 16 16 C -0.48 -22.30 7.68 23.46 0.18 -22.12 16 17 H 0.10 5.27 5.46 -2.91 -0.02 5.26 16 18 C 0.06 2.60 5.23 85.26 0.45 3.05 16 19 N -0.81 -36.59 13.93 21.83 0.30 -36.29 16 20 Si 0.95 34.21 22.88 68.60 1.57 35.78 16 21 H -0.27 -10.03 6.83 99.48 0.68 -9.35 16 22 H -0.28 -9.52 7.11 99.48 0.71 -8.82 16 23 H -0.22 -7.51 4.08 99.48 0.41 -7.10 16 24 C 0.51 17.86 3.75 87.66 0.33 18.19 16 25 N -0.83 -28.31 4.17 -173.53 -0.72 -29.03 16 26 O -0.57 -22.73 16.74 -3.04 -0.05 -22.78 16 27 H 0.04 1.04 7.17 -2.38 -0.02 1.02 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 1.38 6.14 -2.39 -0.01 1.37 16 30 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.05 1.34 5.99 -2.39 -0.01 1.33 16 33 H 0.06 1.41 6.95 -2.38 -0.02 1.39 16 34 H 0.06 2.40 6.00 -2.39 -0.01 2.39 16 35 H 0.09 2.46 5.83 -2.39 -0.01 2.45 16 36 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.43 12.45 7.55 -96.74 -0.73 11.72 16 38 H 0.11 4.61 7.32 -2.91 -0.02 4.59 16 39 H 0.12 4.09 8.06 -2.91 -0.02 4.06 16 40 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 41 H 0.10 4.09 3.57 -2.91 -0.01 4.08 16 42 H 0.30 12.21 8.30 -92.71 -0.77 11.44 16 43 H 0.41 13.87 4.53 -92.70 -0.42 13.45 16 44 H 0.40 13.52 6.93 -92.72 -0.64 12.88 16 Total: -1.00 -60.86 330.89 -1.25 -62.11 By element: Atomic # 1 Polarization: 64.14 SS G_CDS: -1.03 Total: 63.11 kcal Atomic # 6 Polarization: -57.57 SS G_CDS: 3.41 Total: -54.16 kcal Atomic # 7 Polarization: -100.91 SS G_CDS: -1.16 Total: -102.07 kcal Atomic # 8 Polarization: -112.89 SS G_CDS: -3.75 Total: -116.64 kcal Atomic # 14 Polarization: 34.21 SS G_CDS: 1.57 Total: 35.78 kcal Atomic # 16 Polarization: 112.15 SS G_CDS: -0.28 Total: 111.86 kcal Total: -60.86 -1.25 -62.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363978793.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.067 kcal (2) G-P(sol) polarization free energy of solvation -60.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds