Wall clock time and date at job start Sat Apr 11 2020 05:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46940 * 2 1 4 4 C 1.52997 * 109.47100 * 299.99967 * 3 2 1 5 5 N 1.46503 * 109.47031 * 180.02562 * 3 2 1 6 6 S 1.65593 * 119.99799 * 180.02562 * 5 3 2 7 7 O 1.42098 * 104.27753 * 308.92735 * 6 5 3 8 8 O 1.42102 * 104.27476 * 181.06656 * 6 5 3 9 9 C 1.81403 * 104.44931 * 64.99917 * 6 5 3 10 10 C 1.50702 * 109.46842 * 179.97438 * 9 6 5 11 11 C 1.38639 * 119.74819 * 270.24830 * 10 9 6 12 12 C 1.37613 * 120.24809 * 180.26072 * 11 10 9 13 13 C 1.40718 * 119.74556 * 359.47093 * 12 11 10 14 14 C 1.41391 * 120.24500 * 180.29972 * 13 12 11 15 15 H 1.08002 * 120.00244 * 24.37367 * 14 13 12 16 16 C 1.39949 * 120.00129 * 204.37426 * 14 13 12 17 17 N 1.30826 * 119.99793 * 17.85075 * 16 14 13 18 18 Si 1.86793 * 120.00334 * 197.85319 * 16 14 13 19 19 H 1.48509 * 109.47143 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47452 * 119.99621 * 18 16 14 21 21 H 1.48495 * 109.47595 * 239.99938 * 18 16 14 22 22 C 1.40709 * 119.51000 * 0.27602 * 13 12 11 23 23 C 1.37623 * 119.74844 * 0.02562 * 22 13 12 24 24 C 1.50693 * 109.46969 * 60.00016 * 3 2 1 25 25 N 1.34784 * 120.00022 * 84.99725 * 24 3 2 26 26 O 1.21284 * 120.00487 * 265.00017 * 24 3 2 27 27 H 1.09002 * 109.47107 * 59.99993 * 1 2 3 28 28 H 1.09002 * 109.46575 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46738 * 299.99856 * 1 2 3 30 30 H 1.09006 * 109.47221 * 240.00262 * 2 1 3 31 31 H 1.08996 * 109.47352 * 120.00384 * 2 1 3 32 32 H 1.08995 * 109.47469 * 300.00401 * 4 3 2 33 33 H 1.09005 * 109.47211 * 60.00394 * 4 3 2 34 34 H 1.09002 * 109.47349 * 179.97438 * 4 3 2 35 35 H 0.97002 * 119.99686 * 0.02562 * 5 3 2 36 36 H 1.08997 * 109.47045 * 60.00397 * 9 6 5 37 37 H 1.08997 * 109.46919 * 299.99466 * 9 6 5 38 38 H 1.07999 * 119.87580 * 0.02562 * 11 10 9 39 39 H 1.07998 * 120.13001 * 179.74575 * 12 11 10 40 40 H 0.97001 * 120.00110 * 179.97438 * 17 16 14 41 41 H 1.08004 * 120.13035 * 180.02562 * 22 13 12 42 42 H 1.07996 * 119.87669 * 180.02562 * 23 22 13 43 43 H 0.97001 * 119.99399 * 0.02562 * 25 24 3 44 44 H 0.96996 * 120.00187 * 179.97438 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5300 2.1638 -1.2492 5 7 3.5051 1.4426 -0.0006 6 16 4.3330 2.8767 -0.0001 7 8 3.7583 3.6134 -1.0707 8 8 5.7006 2.4918 -0.0266 9 6 3.9170 3.6389 1.5926 10 6 4.6198 4.9666 1.7128 11 6 5.8874 5.0258 2.2711 12 6 6.5365 6.2333 2.3908 13 6 5.9132 7.4093 1.9338 14 6 6.5730 8.6548 2.0459 15 1 7.6511 8.6919 2.0997 16 6 5.8292 9.8395 2.0870 17 7 4.5530 9.8010 2.3720 18 14 6.6586 11.4758 1.7348 19 1 8.0965 11.2488 1.4410 20 1 6.0099 12.1176 0.5633 21 1 6.5288 12.3617 2.9195 22 6 4.6287 7.3365 1.3641 23 6 3.9958 6.1188 1.2601 24 6 1.5377 2.1529 1.2304 25 7 2.2145 2.0501 2.3915 26 8 0.5243 2.8171 1.1761 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 1.6500 -2.1392 33 1 0.4400 2.1638 -1.2492 34 1 1.8929 3.1916 -1.2490 35 1 3.9900 0.6025 -0.0013 36 1 4.2368 2.9843 2.4032 37 1 2.8393 3.7913 1.6520 38 1 6.3658 4.1213 2.6168 39 1 7.5222 6.2778 2.8298 40 1 4.0375 10.6222 2.4009 41 1 4.1412 8.2327 1.0097 42 1 3.0101 6.0605 0.8228 43 1 3.0251 1.5191 2.4348 44 1 1.8914 2.5076 3.1834 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364122104.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:23 Heat of formation + Delta-G solvation = -80.741599 kcal Electronic energy + Delta-G solvation = -28610.903152 eV Core-core repulsion = 24655.526357 eV Total energy + Delta-G solvation = -3955.376795 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.63294 -37.82017 -36.91949 -36.49708 -35.53666 -34.52094 -33.92031 -32.39934 -31.37666 -29.45264 -28.85538 -27.82087 -25.23560 -24.25889 -23.19467 -21.19091 -20.43292 -19.95710 -19.03196 -17.96346 -17.66810 -17.45669 -17.23660 -16.05695 -15.68366 -15.50397 -15.14922 -14.97681 -14.72066 -14.37385 -13.95718 -13.77328 -13.42598 -13.23365 -12.86480 -12.68238 -12.48732 -12.15529 -12.11871 -12.05097 -11.84473 -11.78476 -11.66526 -11.62321 -11.49102 -11.18618 -11.16471 -10.89124 -10.79419 -10.79009 -10.45887 -10.28771 -9.87766 -9.61245 -9.50932 -9.49040 -9.21695 -7.62929 -7.46494 -6.94050 -4.51106 0.48165 2.22735 2.60829 2.93348 2.94483 3.00459 3.05530 3.08658 3.19827 3.81535 4.05436 4.32835 4.45038 4.46048 4.51503 4.70253 4.78988 5.04621 5.19410 5.26960 5.29145 5.44802 5.52971 5.58957 5.71713 5.85754 5.88485 6.01011 6.05069 6.17111 6.25929 6.48695 6.58874 6.81662 6.82524 6.89929 7.01574 7.08480 7.16796 7.44473 7.64512 7.88981 7.89436 7.97603 8.11122 8.46695 8.70584 8.78583 9.98964 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022176 B = 0.003086 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.311719 B = 9069.919756 C = 9451.477763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.114 4.114 3 C 0.165 3.835 4 C -0.176 4.176 5 N -1.124 6.124 6 S 2.560 3.440 7 O -0.952 6.952 8 O -0.961 6.961 9 C -0.524 4.524 10 C -0.237 4.237 11 C -0.068 4.068 12 C -0.226 4.226 13 C 0.118 3.882 14 C -0.446 4.446 15 H 0.084 0.916 16 C 0.073 3.927 17 N -0.779 5.779 18 Si 0.912 3.088 19 H -0.258 1.258 20 H -0.269 1.269 21 H -0.273 1.273 22 C -0.166 4.166 23 C -0.078 4.078 24 C 0.499 3.501 25 N -0.853 5.853 26 O -0.517 6.517 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.415 0.585 36 H 0.120 0.880 37 H 0.131 0.869 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.284 0.716 41 H 0.123 0.877 42 H 0.094 0.906 43 H 0.403 0.597 44 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.957 -16.768 -0.843 17.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.153 4.153 3 C 0.072 3.928 4 C -0.235 4.235 5 N -0.880 5.880 6 S 2.662 3.338 7 O -0.941 6.941 8 O -0.952 6.952 9 C -0.655 4.655 10 C -0.243 4.243 11 C -0.088 4.088 12 C -0.246 4.246 13 C 0.114 3.886 14 C -0.475 4.475 15 H 0.102 0.898 16 C -0.147 4.147 17 N -0.403 5.403 18 Si 0.736 3.264 19 H -0.182 1.182 20 H -0.194 1.194 21 H -0.198 1.198 22 C -0.185 4.185 23 C -0.098 4.098 24 C 0.281 3.719 25 N -0.420 5.420 26 O -0.391 6.391 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.249 0.751 36 H 0.138 0.862 37 H 0.149 0.851 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.140 0.860 42 H 0.113 0.887 43 H 0.233 0.767 44 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -6.428 -15.864 -1.792 17.210 hybrid contribution 0.462 0.167 0.996 1.110 sum -5.966 -15.697 -0.796 16.812 Atomic orbital electron populations 1.21890 0.94071 1.02139 1.03500 1.21725 0.97451 0.92461 1.03680 1.20421 0.80214 0.98162 0.93968 1.22621 1.02512 1.03866 0.94462 1.56234 1.13373 1.25948 1.92490 1.07286 0.73946 0.73395 0.79215 1.93500 1.77522 1.71629 1.51475 1.93543 1.32611 1.81159 1.87860 1.29584 1.09846 1.07248 1.18851 1.18108 0.97481 0.90468 1.18246 1.20456 0.93636 0.96813 0.97862 1.20978 1.01144 0.92824 1.09631 1.17743 0.91629 0.92387 0.86823 1.19787 0.95098 0.90201 1.42453 0.89820 1.26030 0.94723 1.01920 0.92009 1.69824 1.08065 1.30832 1.31575 0.86190 0.80836 0.80389 0.78988 1.18163 1.19440 1.19804 1.21327 0.97302 0.96142 1.03760 1.20617 0.97897 0.92696 0.98573 1.21019 0.84413 0.80948 0.85537 1.44410 1.30393 1.54399 1.12803 1.90798 1.24116 1.39113 1.85044 0.91358 0.92061 0.92012 0.89696 0.90862 0.91039 0.90342 0.87854 0.75127 0.86156 0.85107 0.88744 0.88335 0.90452 0.85955 0.88742 0.76721 0.75896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.25 37.16 0.34 -0.91 16 2 C -0.11 -0.86 5.09 -26.73 -0.14 -1.00 16 3 C 0.16 1.79 0.85 -132.97 -0.11 1.68 16 4 C -0.18 -2.26 7.21 37.16 0.27 -1.99 16 5 N -1.12 -12.18 4.76 -0.40 0.00 -12.19 16 6 S 2.56 41.72 5.36 -107.50 -0.58 41.14 16 7 O -0.95 -18.67 14.61 -57.54 -0.84 -19.51 16 8 O -0.96 -18.26 18.08 -57.54 -1.04 -19.30 16 9 C -0.52 -8.33 3.97 36.01 0.14 -8.19 16 10 C -0.24 -5.04 5.16 -104.33 -0.54 -5.58 16 11 C -0.07 -1.48 9.67 -39.66 -0.38 -1.87 16 12 C -0.23 -5.41 9.80 -38.87 -0.38 -5.79 16 13 C 0.12 3.07 5.57 -106.83 -0.60 2.48 16 14 C -0.45 -11.44 9.05 -37.74 -0.34 -11.78 16 15 H 0.08 2.05 7.91 -52.49 -0.41 1.63 16 16 C 0.07 1.77 5.14 -17.34 -0.09 1.68 16 17 N -0.78 -19.43 10.95 55.55 0.61 -18.82 16 18 Si 0.91 18.00 29.59 -169.99 -5.03 12.97 16 19 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 20 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 21 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 22 C -0.17 -4.28 8.70 -38.87 -0.34 -4.62 16 23 C -0.08 -1.84 9.67 -39.66 -0.38 -2.23 16 24 C 0.50 6.06 3.61 -10.99 -0.04 6.02 16 25 N -0.85 -7.72 5.55 31.22 0.17 -7.54 16 26 O -0.52 -8.08 16.31 5.55 0.09 -7.99 16 27 H 0.07 0.56 6.43 -51.93 -0.33 0.23 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.58 6.82 -51.93 -0.35 0.23 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.93 6.16 -51.93 -0.32 0.61 16 34 H 0.10 1.66 5.39 -51.93 -0.28 1.38 16 35 H 0.41 3.27 8.57 -34.47 -0.30 2.97 16 36 H 0.12 1.45 6.64 -51.93 -0.34 1.10 16 37 H 0.13 2.00 4.93 -51.93 -0.26 1.75 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 39 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 40 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 41 H 0.12 3.24 6.16 -52.48 -0.32 2.92 16 42 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 43 H 0.40 2.65 6.95 -40.82 -0.28 2.36 16 44 H 0.41 3.42 8.93 -40.82 -0.36 3.06 16 LS Contribution 359.18 15.07 5.41 5.41 Total: -1.00 -33.31 359.18 -9.45 -42.76 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -5.66 Total: 15.16 kcal Atomic # 6 Polarization: -29.51 SS G_CDS: -2.59 Total: -32.10 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.78 Total: -38.55 kcal Atomic # 8 Polarization: -45.00 SS G_CDS: -1.79 Total: -46.80 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Atomic # 16 Polarization: 41.72 SS G_CDS: -0.58 Total: 41.14 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.31 -9.45 -42.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364122104.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.982 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds