Wall clock time and date at job start Sat Apr 11 2020 05:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46940 * 2 1 4 4 C 1.52997 * 109.47100 * 299.99967 * 3 2 1 5 5 N 1.46503 * 109.47031 * 180.02562 * 3 2 1 6 6 S 1.65593 * 119.99799 * 180.02562 * 5 3 2 7 7 O 1.42098 * 104.27753 * 308.92735 * 6 5 3 8 8 O 1.42102 * 104.27476 * 181.06656 * 6 5 3 9 9 C 1.81403 * 104.44931 * 64.99917 * 6 5 3 10 10 C 1.50702 * 109.46842 * 179.97438 * 9 6 5 11 11 C 1.38639 * 119.74819 * 270.24830 * 10 9 6 12 12 C 1.37613 * 120.24809 * 180.26072 * 11 10 9 13 13 C 1.40718 * 119.74556 * 359.47093 * 12 11 10 14 14 C 1.41391 * 120.24500 * 180.29972 * 13 12 11 15 15 H 1.08002 * 120.00244 * 24.37367 * 14 13 12 16 16 C 1.39949 * 120.00129 * 204.37426 * 14 13 12 17 17 N 1.30826 * 119.99793 * 17.85075 * 16 14 13 18 18 Si 1.86793 * 120.00334 * 197.85319 * 16 14 13 19 19 H 1.48509 * 109.47143 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47452 * 119.99621 * 18 16 14 21 21 H 1.48495 * 109.47595 * 239.99938 * 18 16 14 22 22 C 1.40709 * 119.51000 * 0.27602 * 13 12 11 23 23 C 1.37623 * 119.74844 * 0.02562 * 22 13 12 24 24 C 1.50693 * 109.46969 * 60.00016 * 3 2 1 25 25 N 1.34784 * 120.00022 * 84.99725 * 24 3 2 26 26 O 1.21284 * 120.00487 * 265.00017 * 24 3 2 27 27 H 1.09002 * 109.47107 * 59.99993 * 1 2 3 28 28 H 1.09002 * 109.46575 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46738 * 299.99856 * 1 2 3 30 30 H 1.09006 * 109.47221 * 240.00262 * 2 1 3 31 31 H 1.08996 * 109.47352 * 120.00384 * 2 1 3 32 32 H 1.08995 * 109.47469 * 300.00401 * 4 3 2 33 33 H 1.09005 * 109.47211 * 60.00394 * 4 3 2 34 34 H 1.09002 * 109.47349 * 179.97438 * 4 3 2 35 35 H 0.97002 * 119.99686 * 0.02562 * 5 3 2 36 36 H 1.08997 * 109.47045 * 60.00397 * 9 6 5 37 37 H 1.08997 * 109.46919 * 299.99466 * 9 6 5 38 38 H 1.07999 * 119.87580 * 0.02562 * 11 10 9 39 39 H 1.07998 * 120.13001 * 179.74575 * 12 11 10 40 40 H 0.97001 * 120.00110 * 179.97438 * 17 16 14 41 41 H 1.08004 * 120.13035 * 180.02562 * 22 13 12 42 42 H 1.07996 * 119.87669 * 180.02562 * 23 22 13 43 43 H 0.97001 * 119.99399 * 0.02562 * 25 24 3 44 44 H 0.96996 * 120.00187 * 179.97438 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5300 2.1638 -1.2492 5 7 3.5051 1.4426 -0.0006 6 16 4.3330 2.8767 -0.0001 7 8 3.7583 3.6134 -1.0707 8 8 5.7006 2.4918 -0.0266 9 6 3.9170 3.6389 1.5926 10 6 4.6198 4.9666 1.7128 11 6 5.8874 5.0258 2.2711 12 6 6.5365 6.2333 2.3908 13 6 5.9132 7.4093 1.9338 14 6 6.5730 8.6548 2.0459 15 1 7.6511 8.6919 2.0997 16 6 5.8292 9.8395 2.0870 17 7 4.5530 9.8010 2.3720 18 14 6.6586 11.4758 1.7348 19 1 8.0965 11.2488 1.4410 20 1 6.0099 12.1176 0.5633 21 1 6.5288 12.3617 2.9195 22 6 4.6287 7.3365 1.3641 23 6 3.9958 6.1188 1.2601 24 6 1.5377 2.1529 1.2304 25 7 2.2145 2.0501 2.3915 26 8 0.5243 2.8171 1.1761 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 1.6500 -2.1392 33 1 0.4400 2.1638 -1.2492 34 1 1.8929 3.1916 -1.2490 35 1 3.9900 0.6025 -0.0013 36 1 4.2368 2.9843 2.4032 37 1 2.8393 3.7913 1.6520 38 1 6.3658 4.1213 2.6168 39 1 7.5222 6.2778 2.8298 40 1 4.0375 10.6222 2.4009 41 1 4.1412 8.2327 1.0097 42 1 3.0101 6.0605 0.8228 43 1 3.0251 1.5191 2.4348 44 1 1.8914 2.5076 3.1834 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364122104.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:22 Heat of formation + Delta-G solvation = -106.679006 kcal Electronic energy + Delta-G solvation = -28612.027883 eV Core-core repulsion = 24655.526357 eV Total energy + Delta-G solvation = -3956.501526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.57938 -39.61364 -38.24683 -37.58632 -36.97273 -36.05777 -35.10233 -33.27083 -33.00290 -31.30009 -29.77189 -29.49909 -26.17855 -25.91405 -23.98446 -23.04035 -22.17360 -20.89876 -20.26498 -19.31793 -18.95452 -18.81495 -18.18719 -17.45516 -17.16770 -16.72703 -16.41803 -16.23812 -15.78747 -15.71694 -15.58668 -15.27680 -14.48090 -14.36081 -14.09356 -13.93175 -13.88096 -13.61991 -13.54225 -13.48029 -13.26175 -13.19277 -12.98140 -12.78451 -12.67675 -12.56846 -12.54217 -12.36297 -12.00432 -11.88301 -11.75486 -11.59004 -11.41747 -11.37373 -11.06290 -10.54566 -10.46529 -9.49291 -9.28429 -8.73214 -6.42140 -0.86375 0.85463 1.05114 1.26177 1.36731 1.47228 1.52679 1.78521 2.16615 2.33738 2.60086 2.78409 3.16327 3.52472 3.63838 3.69531 3.71646 3.88285 3.95458 4.10590 4.38768 4.39754 4.49235 4.52623 4.64086 4.73867 4.91380 4.97139 4.98055 5.06813 5.07213 5.14156 5.23668 5.32127 5.35291 5.52793 5.58946 5.77263 5.81394 6.00864 6.02242 6.05098 6.23449 6.26059 6.59180 6.83256 6.91293 7.14026 8.23169 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022176 B = 0.003086 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.311719 B = 9069.919756 C = 9451.477763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.109 4.109 3 C 0.165 3.835 4 C -0.183 4.183 5 N -1.097 6.097 6 S 2.586 3.414 7 O -0.987 6.987 8 O -0.984 6.984 9 C -0.532 4.532 10 C -0.229 4.229 11 C -0.073 4.073 12 C -0.243 4.243 13 C 0.086 3.914 14 C -0.487 4.487 15 H 0.083 0.917 16 C 0.033 3.967 17 N -0.816 5.816 18 Si 0.985 3.015 19 H -0.255 1.255 20 H -0.266 1.266 21 H -0.262 1.262 22 C -0.194 4.194 23 C -0.093 4.093 24 C 0.493 3.507 25 N -0.839 5.839 26 O -0.558 6.558 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.043 0.957 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.435 0.565 36 H 0.167 0.833 37 H 0.139 0.861 38 H 0.133 0.867 39 H 0.109 0.891 40 H 0.291 0.709 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.417 0.583 44 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.688 -19.949 -0.450 20.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.148 4.148 3 C 0.073 3.927 4 C -0.242 4.242 5 N -0.859 5.859 6 S 2.686 3.314 7 O -0.976 6.976 8 O -0.974 6.974 9 C -0.663 4.663 10 C -0.234 4.234 11 C -0.092 4.092 12 C -0.263 4.263 13 C 0.083 3.917 14 C -0.516 4.516 15 H 0.101 0.899 16 C -0.183 4.183 17 N -0.441 5.441 18 Si 0.805 3.195 19 H -0.179 1.179 20 H -0.190 1.190 21 H -0.187 1.187 22 C -0.213 4.213 23 C -0.112 4.112 24 C 0.276 3.724 25 N -0.407 5.407 26 O -0.435 6.435 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.124 0.876 31 H 0.119 0.881 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.274 0.726 36 H 0.185 0.815 37 H 0.157 0.843 38 H 0.151 0.849 39 H 0.127 0.873 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.250 0.750 44 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -6.098 -19.042 -1.354 20.041 hybrid contribution 0.232 0.839 0.846 1.214 sum -5.866 -18.203 -0.508 19.132 Atomic orbital electron populations 1.21899 0.94418 1.03155 1.02253 1.21813 0.96999 0.89905 1.06117 1.20512 0.79400 1.00247 0.92543 1.22636 1.03007 1.02269 0.96241 1.55574 1.13416 1.25054 1.91895 1.05899 0.73266 0.73961 0.78268 1.93498 1.78068 1.73312 1.52771 1.93523 1.34157 1.81773 1.87956 1.29772 1.09986 1.05423 1.21104 1.18488 0.97276 0.92019 1.15578 1.20885 0.93732 0.97451 0.97136 1.21254 1.01888 0.93231 1.09879 1.18080 0.92150 0.93686 0.87827 1.20001 0.95283 0.91225 1.45126 0.89864 1.26876 0.95204 1.05164 0.91097 1.69874 1.09446 1.32096 1.32636 0.85108 0.79611 0.75717 0.79016 1.17881 1.19042 1.18676 1.21293 0.98074 0.96482 1.05496 1.20842 0.98315 0.93121 0.98931 1.21265 0.84127 0.80515 0.86512 1.44324 1.30376 1.53784 1.12177 1.90792 1.26055 1.40894 1.85737 0.92185 0.89867 0.93796 0.87605 0.88116 0.89697 0.89902 0.91292 0.72604 0.81499 0.84296 0.84918 0.87314 0.89803 0.87933 0.88262 0.74988 0.75216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.25 71.98 0.67 -1.40 16 2 C -0.11 -1.18 5.09 30.60 0.16 -1.03 16 3 C 0.17 3.11 0.85 2.86 0.00 3.11 16 4 C -0.18 -4.45 7.21 71.98 0.52 -3.93 16 5 N -1.10 -19.73 4.76 -155.18 -0.74 -20.47 16 6 S 2.59 78.25 5.36 -56.49 -0.30 77.95 16 7 O -0.99 -38.13 14.61 -127.65 -1.86 -40.00 16 8 O -0.98 -34.57 18.08 -127.65 -2.31 -36.88 16 9 C -0.53 -15.51 3.97 71.24 0.28 -15.23 16 10 C -0.23 -9.53 5.16 -19.67 -0.10 -9.63 16 11 C -0.07 -3.08 9.67 22.22 0.21 -2.87 16 12 C -0.24 -11.80 9.80 22.73 0.22 -11.58 16 13 C 0.09 4.67 5.57 -21.29 -0.12 4.55 16 14 C -0.49 -26.22 9.05 23.46 0.21 -26.00 16 15 H 0.08 4.27 7.91 -2.91 -0.02 4.25 16 16 C 0.03 1.65 5.14 85.26 0.44 2.09 16 17 N -0.82 -42.69 10.95 21.83 0.24 -42.45 16 18 Si 0.99 37.99 29.59 68.60 2.03 40.02 16 19 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 20 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 21 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 22 C -0.19 -10.56 8.70 22.73 0.20 -10.36 16 23 C -0.09 -4.49 9.67 22.22 0.21 -4.27 16 24 C 0.49 10.85 3.61 87.65 0.32 11.17 16 25 N -0.84 -12.32 5.55 -173.53 -0.96 -13.29 16 26 O -0.56 -17.02 16.31 -3.04 -0.05 -17.07 16 27 H 0.06 0.87 6.43 -2.39 -0.02 0.86 16 28 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.04 0.74 6.82 -2.39 -0.02 0.72 16 30 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.08 1.91 6.16 -2.38 -0.01 1.90 16 34 H 0.07 2.21 5.39 -2.39 -0.01 2.20 16 35 H 0.44 4.70 8.57 -96.74 -0.83 3.87 16 36 H 0.17 3.23 6.64 -2.39 -0.02 3.21 16 37 H 0.14 3.97 4.93 -2.39 -0.01 3.96 16 38 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 39 H 0.11 4.89 8.06 -2.91 -0.02 4.86 16 40 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 41 H 0.10 5.86 6.16 -2.91 -0.02 5.84 16 42 H 0.10 4.57 8.06 -2.91 -0.02 4.54 16 43 H 0.42 3.49 6.95 -92.71 -0.64 2.85 16 44 H 0.41 5.68 8.93 -92.71 -0.83 4.85 16 Total: -1.00 -77.51 359.18 -1.96 -79.47 By element: Atomic # 1 Polarization: 39.33 SS G_CDS: -1.22 Total: 38.10 kcal Atomic # 6 Polarization: -68.60 SS G_CDS: 3.22 Total: -65.38 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -1.46 Total: -76.21 kcal Atomic # 8 Polarization: -89.72 SS G_CDS: -4.22 Total: -93.94 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Atomic # 16 Polarization: 78.25 SS G_CDS: -0.30 Total: 77.95 kcal Total: -77.51 -1.96 -79.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364122104.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.213 kcal (2) G-P(sol) polarization free energy of solvation -77.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds