Wall clock time and date at job start Sat Apr 11 2020 05:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47382 * 2 1 4 4 C 1.50700 * 109.47115 * 240.00132 * 2 1 3 5 5 H 1.08006 * 119.99714 * 239.99899 * 4 2 1 6 6 C 1.37873 * 119.99942 * 60.00325 * 4 2 1 7 7 N 1.31512 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99795 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47226 * 89.99506 * 8 6 4 10 10 H 1.48499 * 109.46940 * 209.99559 * 8 6 4 11 11 H 1.48500 * 109.46876 * 329.99402 * 8 6 4 12 12 C 1.53008 * 109.47303 * 119.99877 * 2 1 3 13 13 S 1.81397 * 109.46972 * 300.00342 * 12 2 1 14 14 O 1.42098 * 110.54582 * 68.37234 * 13 12 2 15 15 O 1.42106 * 110.54219 * 291.62005 * 13 12 2 16 16 N 1.65598 * 104.44647 * 179.97438 * 13 12 2 17 17 C 1.46507 * 120.00203 * 65.00183 * 16 13 12 18 18 C 1.50694 * 109.47170 * 164.99957 * 17 16 13 19 19 C 1.38364 * 119.85421 * 89.99592 * 18 17 16 20 20 C 1.37967 * 120.14264 * 179.97438 * 19 18 17 21 21 C 1.39570 * 119.85310 * 0.02562 * 20 19 18 22 22 C 1.47842 * 120.14248 * 179.97438 * 21 20 19 23 23 N 1.34784 * 120.00082 * 180.02562 * 22 21 20 24 24 O 1.21552 * 120.00146 * 359.97438 * 22 21 20 25 25 C 1.39581 * 119.71335 * 0.25292 * 21 20 19 26 26 C 1.37955 * 119.84955 * 359.46623 * 25 21 20 27 27 H 1.09001 * 109.47257 * 300.00173 * 1 2 3 28 28 H 1.08994 * 109.47089 * 59.99651 * 1 2 3 29 29 H 1.08997 * 109.47417 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47496 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47293 * 300.00223 * 3 2 1 32 32 H 1.09002 * 109.46678 * 60.00081 * 3 2 1 33 33 H 0.96999 * 120.00039 * 180.02562 * 7 6 4 34 34 H 1.08994 * 109.46967 * 180.02562 * 12 2 1 35 35 H 1.09004 * 109.46569 * 59.99961 * 12 2 1 36 36 H 0.97001 * 120.00154 * 244.99322 * 16 13 12 37 37 H 1.08997 * 109.46842 * 44.99563 * 17 16 13 38 38 H 1.09007 * 109.46581 * 284.99667 * 17 16 13 39 39 H 1.07998 * 119.92639 * 0.02562 * 19 18 17 40 40 H 1.07996 * 120.07026 * 180.02562 * 20 19 18 41 41 H 0.97000 * 119.99339 * 359.97438 * 23 22 21 42 42 H 0.96995 * 120.00015 * 179.72522 * 23 22 21 43 43 H 1.07995 * 120.07371 * 179.72649 * 25 21 20 44 44 H 1.08002 * 119.92829 * 180.27238 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3213 -1.1203 -4.0079 9 1 1.3427 -2.1616 -4.4119 10 1 2.4866 -0.1413 -5.1122 11 1 3.6293 -1.7582 -3.7121 12 6 2.0400 -0.7212 1.2493 13 16 1.4353 0.1339 2.7304 14 8 0.0279 -0.0183 2.8544 15 8 2.0479 1.4101 2.8544 16 7 2.0530 -0.7408 3.9936 17 6 3.5014 -0.7981 4.2060 18 6 3.7859 -1.3265 5.5883 19 6 3.9349 -2.6875 5.7883 20 6 4.1960 -3.1777 7.0512 21 6 4.3092 -2.2975 8.1284 22 6 4.5883 -2.8158 9.4845 23 7 4.6965 -1.9633 10.5229 24 8 4.7192 -4.0110 9.6634 25 6 4.1520 -0.9262 7.9208 26 6 3.8970 -0.4486 6.6519 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 0.7082 1.1610 -3.4843 34 1 3.1299 -0.7208 1.2495 35 1 1.6766 -1.7489 1.2492 36 1 1.4558 -1.2152 4.5930 37 1 3.9232 0.2019 4.1053 38 1 3.9514 -1.4587 3.4648 39 1 3.8474 -3.3674 4.9537 40 1 4.3125 -4.2401 7.2059 41 1 4.5917 -1.0096 10.3802 42 1 4.8757 -2.3037 11.4133 43 1 4.2340 -0.2402 8.7509 44 1 3.7795 0.6126 6.4891 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364774811.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:27 Heat of formation + Delta-G solvation = -117.462224 kcal Electronic energy + Delta-G solvation = -27093.839333 eV Core-core repulsion = 23136.870212 eV Total energy + Delta-G solvation = -3956.969121 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.16807 -39.53648 -38.09578 -38.07081 -36.87509 -36.28398 -34.84784 -33.60612 -32.04174 -31.86403 -28.28245 -27.65532 -27.31997 -27.15692 -23.75873 -23.65151 -21.46985 -21.31144 -20.23388 -19.23448 -18.78897 -17.95688 -17.83095 -17.53588 -16.90250 -16.61497 -16.25020 -16.11008 -15.92803 -15.85482 -15.51565 -14.99740 -14.71429 -14.57981 -14.39149 -14.27266 -14.03460 -13.81792 -13.73580 -13.32508 -13.02845 -12.92248 -12.87438 -12.74594 -12.47492 -12.37033 -12.15090 -12.11894 -12.04537 -11.91611 -11.52945 -11.35012 -11.23247 -10.75972 -10.68169 -10.39466 -10.31994 -9.97409 -9.90806 -8.00923 -6.19063 -0.64186 -0.20810 0.39320 1.45130 1.47485 1.55446 1.70198 2.05404 2.45731 2.51768 2.84811 2.89925 3.21560 3.35445 3.58403 3.79468 3.90985 4.01982 4.04600 4.22677 4.28820 4.37139 4.48273 4.63575 4.66575 4.81613 4.83605 4.90462 4.92798 5.03667 5.05874 5.12534 5.24046 5.33277 5.42858 5.54395 5.54730 5.67548 5.81891 5.88519 6.01348 6.09980 6.15393 6.37048 6.38513 6.86144 7.25336 7.49180 8.98697 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023660 B = 0.002324 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.154440 B =12043.104382 C =12664.623140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.068 3.932 3 C -0.160 4.160 4 C -0.514 4.514 5 H 0.064 0.936 6 C 0.016 3.984 7 N -0.908 5.908 8 Si 0.953 3.047 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.266 1.266 12 C -0.587 4.587 13 S 2.616 3.384 14 O -0.994 6.994 15 O -0.987 6.987 16 N -1.110 6.110 17 C 0.141 3.859 18 C -0.071 4.071 19 C -0.111 4.111 20 C -0.075 4.075 21 C -0.150 4.150 22 C 0.560 3.440 23 N -0.829 5.829 24 O -0.590 6.590 25 C -0.077 4.077 26 C -0.115 4.115 27 H 0.033 0.967 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.034 0.966 33 H 0.260 0.740 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.422 0.578 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.149 0.851 40 H 0.131 0.869 41 H 0.417 0.583 42 H 0.413 0.587 43 H 0.162 0.838 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.594 -3.260 22.381 24.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.066 3.934 3 C -0.218 4.218 4 C -0.553 4.553 5 H 0.082 0.918 6 C -0.183 4.183 7 N -0.547 5.547 8 Si 0.779 3.221 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.191 1.191 12 C -0.720 4.720 13 S 2.713 3.287 14 O -0.984 6.984 15 O -0.977 6.977 16 N -0.871 5.871 17 C 0.016 3.984 18 C -0.073 4.073 19 C -0.130 4.130 20 C -0.094 4.094 21 C -0.153 4.153 22 C 0.347 3.653 23 N -0.393 5.393 24 O -0.471 6.471 25 C -0.096 4.096 26 C -0.134 4.134 27 H 0.052 0.948 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.258 0.742 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.167 0.833 40 H 0.149 0.851 41 H 0.250 0.750 42 H 0.245 0.755 43 H 0.180 0.820 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 8.156 -2.997 22.182 23.823 hybrid contribution 0.153 -0.749 -0.836 1.133 sum 8.308 -3.746 21.346 23.210 Atomic orbital electron populations 1.22218 0.97958 1.00424 1.01310 1.17928 0.92199 0.92277 0.91020 1.22202 0.99965 0.98259 1.01347 1.21302 1.31462 1.12188 0.90343 0.91758 1.25675 0.95315 0.95674 1.01678 1.69945 1.37264 1.23714 1.23747 0.85638 0.78877 0.78200 0.79370 1.20604 1.21442 1.19069 1.30463 1.12846 1.13415 1.15247 1.04667 0.73413 0.74847 0.75726 1.93513 1.31638 1.87056 1.86233 1.93504 1.78403 1.39860 1.85941 1.55448 1.14615 1.70821 1.46170 1.20539 0.79673 1.03345 0.94885 1.20094 0.98284 0.93925 0.94998 1.21298 0.99096 0.95046 0.97521 1.21364 0.95741 1.00336 0.91921 1.20019 1.07010 0.95081 0.93239 1.18501 0.75309 0.85586 0.85902 1.43603 1.73684 1.11470 1.10587 1.90801 1.52805 1.17510 1.86029 1.21560 0.96224 0.93540 0.98259 1.21378 0.98912 1.01078 0.92017 0.94844 0.91204 0.94218 0.93843 0.91311 0.94700 0.93024 0.84055 0.84389 0.74202 0.88873 0.88376 0.83336 0.85148 0.75014 0.75482 0.82032 0.83583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.83 7.77 71.98 0.56 -7.27 16 2 C 0.07 3.14 0.52 -52.93 -0.03 3.11 16 3 C -0.16 -7.62 7.78 71.98 0.56 -7.06 16 4 C -0.51 -25.90 8.01 25.60 0.21 -25.70 16 5 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 6 C 0.02 0.82 5.15 84.65 0.44 1.26 16 7 N -0.91 -49.59 9.35 21.45 0.20 -49.38 16 8 Si 0.95 41.46 29.54 68.60 2.03 43.49 16 9 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 12 C -0.59 -20.38 5.01 71.98 0.36 -20.02 16 13 S 2.62 86.20 4.49 -56.49 -0.25 85.95 16 14 O -0.99 -39.07 15.70 -127.65 -2.00 -41.08 16 15 O -0.99 -37.31 15.12 -127.65 -1.93 -39.24 16 16 N -1.11 -24.52 5.88 -190.78 -1.12 -25.64 16 17 C 0.14 2.47 6.25 85.63 0.54 3.01 16 18 C -0.07 -1.11 5.28 -19.81 -0.10 -1.21 16 19 C -0.11 -1.69 9.68 22.24 0.22 -1.48 16 20 C -0.07 -1.29 9.60 22.53 0.22 -1.08 16 21 C -0.15 -2.37 5.87 -20.09 -0.12 -2.49 16 22 C 0.56 9.71 8.05 86.78 0.70 10.41 16 23 N -0.83 -6.43 8.83 -175.60 -1.55 -7.98 16 24 O -0.59 -15.61 17.18 -3.88 -0.07 -15.68 16 25 C -0.08 -0.85 9.54 22.53 0.21 -0.64 16 26 C -0.12 -1.55 9.68 22.23 0.22 -1.34 16 27 H 0.03 1.54 5.46 -2.39 -0.01 1.53 16 28 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 29 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 32 H 0.03 1.57 5.46 -2.39 -0.01 1.56 16 33 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 34 H 0.14 4.17 8.14 -2.39 -0.02 4.15 16 35 H 0.14 4.25 8.14 -2.39 -0.02 4.23 16 36 H 0.42 8.10 8.61 -96.74 -0.83 7.27 16 37 H 0.09 1.66 7.64 -2.39 -0.02 1.65 16 38 H 0.10 1.35 8.08 -2.38 -0.02 1.33 16 39 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 40 H 0.13 2.39 7.65 -2.91 -0.02 2.37 16 41 H 0.42 0.54 6.86 -92.71 -0.64 -0.10 16 42 H 0.41 2.30 8.93 -92.71 -0.83 1.47 16 43 H 0.16 0.53 6.41 -2.91 -0.02 0.51 16 44 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -75.35 367.57 -1.96 -77.31 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: -1.23 Total: 22.72 kcal Atomic # 6 Polarization: -54.45 SS G_CDS: 3.97 Total: -50.48 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -2.47 Total: -83.00 kcal Atomic # 8 Polarization: -92.00 SS G_CDS: -4.00 Total: -96.00 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Atomic # 16 Polarization: 86.20 SS G_CDS: -0.25 Total: 85.95 kcal Total: -75.35 -1.96 -77.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364774811.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.150 kcal (2) G-P(sol) polarization free energy of solvation -75.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds