Wall clock time and date at job start Sat Apr 11 2020 05:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47053 * 2 1 4 4 H 1.08999 * 109.47444 * 54.08889 * 3 2 1 5 5 C 1.52996 * 109.46906 * 294.09433 * 3 2 1 6 6 C 1.52990 * 109.47358 * 174.09440 * 3 2 1 7 7 H 1.08997 * 109.47498 * 174.87613 * 6 3 2 8 8 N 1.46497 * 109.47262 * 54.87562 * 6 3 2 9 9 S 1.65602 * 120.00105 * 143.22063 * 8 6 3 10 10 O 1.42105 * 106.40311 * 313.63427 * 9 8 6 11 11 O 1.42109 * 106.40376 * 180.71922 * 9 8 6 12 12 C 1.76201 * 107.22077 * 67.17875 * 9 8 6 13 13 C 1.37638 * 120.12493 * 244.01743 * 12 9 8 14 14 C 1.38613 * 120.24224 * 180.31772 * 13 12 9 15 15 C 1.38654 * 120.50621 * 359.67015 * 14 13 12 16 16 C 1.37602 * 120.24353 * 0.02562 * 15 14 13 17 17 C 1.40691 * 120.12649 * 63.70909 * 12 9 8 18 18 C 1.41392 * 120.24608 * 359.97438 * 17 12 9 19 19 H 1.08004 * 120.00138 * 27.52116 * 18 17 12 20 20 C 1.39947 * 120.00536 * 207.51627 * 18 17 12 21 21 N 1.30819 * 120.00279 * 195.54232 * 20 18 17 22 22 Si 1.86803 * 119.99412 * 15.54513 * 20 18 17 23 23 H 1.48500 * 109.47064 * 266.50473 * 22 20 18 24 24 H 1.48497 * 109.47251 * 26.50903 * 22 20 18 25 25 H 1.48500 * 109.46984 * 146.51089 * 22 20 18 26 26 C 1.50706 * 109.47269 * 294.87618 * 6 3 2 27 27 N 1.34776 * 120.00248 * 276.57235 * 26 6 3 28 28 O 1.21283 * 119.99494 * 96.56739 * 26 6 3 29 29 H 1.08999 * 109.47148 * 60.00306 * 1 2 3 30 30 H 1.09007 * 109.46862 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47280 * 299.99993 * 1 2 3 32 32 H 1.08991 * 109.47671 * 239.99893 * 2 1 3 33 33 H 1.09009 * 109.46782 * 119.99298 * 2 1 3 34 34 H 1.09003 * 109.47151 * 59.99916 * 5 3 2 35 35 H 1.09003 * 109.47676 * 179.97438 * 5 3 2 36 36 H 1.08999 * 109.47349 * 300.00132 * 5 3 2 37 37 H 0.97000 * 120.00488 * 323.21977 * 8 6 3 38 38 H 1.07999 * 119.87865 * 0.02562 * 13 12 9 39 39 H 1.08006 * 119.74564 * 179.69673 * 14 13 12 40 40 H 1.07998 * 119.88102 * 180.02562 * 15 14 13 41 41 H 1.08001 * 120.12568 * 180.02562 * 16 15 14 42 42 H 0.97002 * 119.99818 * 180.02562 * 21 20 18 43 43 H 0.96997 * 119.99870 * 4.88517 * 27 26 6 44 44 H 0.96993 * 119.99841 * 184.89194 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5929 1.9860 0.8323 5 6 1.6548 2.1196 -1.3168 6 6 3.5627 1.4451 0.1484 7 1 3.9349 2.4655 0.0573 8 7 4.1571 0.6130 -0.9006 9 16 5.5899 1.0605 -1.6001 10 8 5.4726 2.4433 -1.9059 11 8 5.8862 0.0711 -2.5762 12 6 6.8378 0.9285 -0.3632 13 6 7.5079 2.0520 0.0647 14 6 8.4946 1.9500 1.0329 15 6 8.8135 0.7193 1.5860 16 6 8.1521 -0.4163 1.1779 17 6 7.1485 -0.3248 0.1956 18 6 6.4618 -1.4848 -0.2311 19 1 6.0500 -1.5324 -1.2284 20 6 6.3156 -2.5713 0.6388 21 7 5.9618 -3.7407 0.1712 22 14 6.6257 -2.3515 2.4678 23 1 8.0339 -2.7070 2.7773 24 1 6.3778 -0.9369 2.8454 25 1 5.7119 -3.2360 3.2345 26 6 3.9367 0.8929 1.4998 27 7 3.9290 1.6964 2.5819 28 8 4.2445 -0.2747 1.6136 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.5699 2.1177 -1.4225 35 1 2.0177 3.1474 -1.3168 36 1 2.1018 1.5761 -2.1492 37 1 3.7114 -0.2000 -1.1856 38 1 7.2674 3.0159 -0.3589 39 1 9.0188 2.8362 1.3592 40 1 9.5837 0.6515 2.3400 41 1 8.4017 -1.3739 1.6103 42 1 5.8602 -4.4936 0.7742 43 1 3.6152 2.6109 2.5046 44 1 4.2374 1.3601 3.4378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364957088.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:39 Heat of formation + Delta-G solvation = -102.953588 kcal Electronic energy + Delta-G solvation = -30237.865435 eV Core-core repulsion = 26281.525456 eV Total energy + Delta-G solvation = -3956.339979 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.61542 -37.75672 -36.70014 -36.28987 -34.93104 -33.75705 -33.21218 -33.08351 -30.61412 -30.03550 -29.59976 -26.82635 -25.28679 -23.84127 -22.00842 -21.09080 -20.81107 -19.67628 -18.65850 -17.63104 -17.37609 -17.13191 -16.49948 -16.25163 -15.49216 -15.22832 -14.81450 -14.47250 -14.17853 -14.13481 -13.87109 -13.61446 -13.46601 -13.31270 -12.86041 -12.67148 -12.22946 -12.09569 -11.95504 -11.80460 -11.69098 -11.36262 -11.30340 -11.22220 -11.17413 -10.82955 -10.69657 -10.63437 -10.56829 -10.45121 -10.31954 -9.99048 -9.84501 -9.29989 -9.24144 -9.17847 -8.65702 -8.15251 -7.73190 -7.07513 -4.73868 1.47273 2.17543 2.65278 3.00685 3.16670 3.22632 3.36570 3.69316 3.97119 4.01257 4.38676 4.68288 4.76687 4.82710 4.94938 5.22836 5.25585 5.37663 5.45926 5.52423 5.59911 5.63189 5.70038 5.85870 5.89918 5.97365 6.01916 6.11238 6.14376 6.22320 6.28339 6.42980 6.46463 6.50762 6.76022 7.04828 7.14861 7.19577 7.32258 7.50174 7.57292 7.65891 7.71167 7.94368 8.26216 8.42530 8.66471 8.73596 9.89635 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011005 B = 0.006935 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.613428 B = 4036.582628 C = 4807.067876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C -0.084 4.084 4 H 0.081 0.919 5 C -0.149 4.149 6 C 0.147 3.853 7 H 0.108 0.892 8 N -1.088 6.088 9 S 2.702 3.298 10 O -0.996 6.996 11 O -0.967 6.967 12 C -0.779 4.779 13 C 0.018 3.982 14 C -0.267 4.267 15 C -0.045 4.045 16 C -0.234 4.234 17 C 0.170 3.830 18 C -0.423 4.423 19 H 0.120 0.880 20 C 0.100 3.900 21 N -0.779 5.779 22 Si 0.933 3.067 23 H -0.285 1.285 24 H -0.232 1.232 25 H -0.296 1.296 26 C 0.492 3.508 27 N -0.863 5.863 28 O -0.489 6.489 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.420 0.580 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.289 0.711 43 H 0.395 0.605 44 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.512 9.217 4.728 14.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C -0.105 4.105 4 H 0.100 0.900 5 C -0.206 4.206 6 C 0.034 3.966 7 H 0.125 0.875 8 N -0.845 5.845 9 S 2.799 3.201 10 O -0.987 6.987 11 O -0.958 6.958 12 C -0.874 4.874 13 C -0.001 4.001 14 C -0.288 4.288 15 C -0.064 4.064 16 C -0.253 4.253 17 C 0.164 3.836 18 C -0.449 4.449 19 H 0.137 0.863 20 C -0.124 4.124 21 N -0.400 5.400 22 Si 0.762 3.238 23 H -0.213 1.213 24 H -0.155 1.155 25 H -0.224 1.224 26 C 0.273 3.727 27 N -0.429 5.429 28 O -0.360 6.360 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.256 0.744 38 H 0.127 0.873 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.120 0.880 42 H 0.100 0.900 43 H 0.222 0.778 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -9.284 8.524 3.675 13.129 hybrid contribution 0.458 -0.348 1.927 2.011 sum -8.826 8.176 5.602 13.271 Atomic orbital electron populations 1.21792 0.95914 1.01515 1.01416 1.21634 0.95569 0.95665 1.03675 1.21302 0.91943 0.97723 0.99507 0.90040 1.21882 1.01160 1.00707 0.96849 1.20600 0.95259 0.95090 0.85665 0.87472 1.55347 1.41158 1.36932 1.51015 1.01061 0.72706 0.72297 0.74051 1.93448 1.86823 1.34286 1.84116 1.93537 1.83498 1.60266 1.58463 1.29649 1.26482 0.99507 1.31760 1.20313 0.92191 0.95469 0.92176 1.20376 1.06038 0.96456 1.05905 1.20754 0.96332 0.93187 0.96081 1.21170 1.01845 0.97109 1.05212 1.16926 0.88555 0.90275 0.87801 1.20202 1.27150 0.95388 1.02156 0.86265 1.26193 0.90372 0.93314 1.02489 1.69671 1.30581 1.00792 1.38994 0.86046 0.75895 0.81138 0.80748 1.21272 1.15525 1.22383 1.21225 0.77652 0.87183 0.86617 1.43871 1.70394 1.16403 1.12245 1.90800 1.44014 1.15935 1.85227 0.92592 0.92870 0.93124 0.91190 0.90801 0.92205 0.92173 0.91922 0.74438 0.87285 0.88518 0.88696 0.88024 0.90026 0.77819 0.77224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.68 37.16 0.36 -1.14 16 2 C -0.13 -1.58 4.86 -26.73 -0.13 -1.71 16 3 C -0.08 -0.96 2.19 -90.63 -0.20 -1.16 16 4 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 5 C -0.15 -1.59 8.85 37.16 0.33 -1.26 16 6 C 0.15 2.14 2.42 -69.09 -0.17 1.97 16 7 H 0.11 1.44 7.43 -51.93 -0.39 1.05 16 8 N -1.09 -19.34 4.31 -5.89 -0.03 -19.36 16 9 S 2.70 57.85 5.04 -107.50 -0.54 57.30 16 10 O -1.00 -21.13 16.22 -57.17 -0.93 -22.06 16 11 O -0.97 -24.02 15.79 -57.17 -0.90 -24.92 16 12 C -0.78 -18.06 5.96 -38.87 -0.23 -18.30 16 13 C 0.02 0.40 9.53 -39.66 -0.38 0.02 16 14 C -0.27 -5.51 10.05 -39.29 -0.39 -5.91 16 15 C -0.04 -0.96 10.02 -39.66 -0.40 -1.36 16 16 C -0.23 -5.65 7.07 -38.87 -0.27 -5.93 16 17 C 0.17 4.28 5.18 -106.83 -0.55 3.72 16 18 C -0.42 -11.21 8.25 -37.74 -0.31 -11.52 16 19 H 0.12 3.36 5.66 -52.48 -0.30 3.06 16 20 C 0.10 2.60 5.45 -17.34 -0.09 2.51 16 21 N -0.78 -20.39 13.93 55.55 0.77 -19.62 16 22 Si 0.93 21.75 22.66 -169.99 -3.85 17.89 16 23 H -0.28 -6.47 6.64 56.52 0.38 -6.10 16 24 H -0.23 -5.47 6.31 56.52 0.36 -5.12 16 25 H -0.30 -6.79 7.11 56.52 0.40 -6.39 16 26 C 0.49 7.87 6.48 -10.98 -0.07 7.80 16 27 N -0.86 -10.26 8.87 31.22 0.28 -9.99 16 28 O -0.49 -9.93 14.08 5.56 0.08 -9.86 16 29 H 0.06 0.51 6.59 -51.93 -0.34 0.16 16 30 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.93 6.65 -51.93 -0.35 0.58 16 33 H 0.07 1.07 6.74 -51.92 -0.35 0.72 16 34 H 0.06 0.53 6.59 -51.93 -0.34 0.19 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.74 7.76 -51.93 -0.40 0.34 16 37 H 0.42 7.31 6.90 -34.47 -0.24 7.08 16 38 H 0.11 2.11 7.33 -52.49 -0.38 1.73 16 39 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 40 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.10 2.45 4.21 -52.49 -0.22 2.23 16 42 H 0.29 6.87 8.30 -40.82 -0.34 6.54 16 43 H 0.39 3.22 8.83 -40.82 -0.36 2.86 16 44 H 0.40 4.63 8.93 -40.82 -0.36 4.27 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -32.97 357.56 -8.02 -41.00 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: -5.78 Total: 16.48 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: -2.51 Total: -32.26 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 1.03 Total: -48.97 kcal Atomic # 8 Polarization: -55.08 SS G_CDS: -1.75 Total: -56.84 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -3.85 Total: 17.89 kcal Atomic # 16 Polarization: 57.85 SS G_CDS: -0.54 Total: 57.30 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.97 -8.02 -41.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364957088.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.957 kcal (2) G-P(sol) polarization free energy of solvation -32.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds