Wall clock time and date at job start Sat Apr 11 2020 05:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47053 * 2 1 4 4 H 1.08999 * 109.47444 * 54.08889 * 3 2 1 5 5 C 1.52996 * 109.46906 * 294.09433 * 3 2 1 6 6 C 1.52990 * 109.47358 * 174.09440 * 3 2 1 7 7 H 1.08997 * 109.47498 * 174.87613 * 6 3 2 8 8 N 1.46497 * 109.47262 * 54.87562 * 6 3 2 9 9 S 1.65602 * 120.00105 * 143.22063 * 8 6 3 10 10 O 1.42105 * 106.40311 * 313.63427 * 9 8 6 11 11 O 1.42109 * 106.40376 * 180.71922 * 9 8 6 12 12 C 1.76201 * 107.22077 * 67.17875 * 9 8 6 13 13 C 1.37638 * 120.12493 * 244.01743 * 12 9 8 14 14 C 1.38613 * 120.24224 * 180.31772 * 13 12 9 15 15 C 1.38654 * 120.50621 * 359.67015 * 14 13 12 16 16 C 1.37602 * 120.24353 * 0.02562 * 15 14 13 17 17 C 1.40691 * 120.12649 * 63.70909 * 12 9 8 18 18 C 1.41392 * 120.24608 * 359.97438 * 17 12 9 19 19 H 1.08004 * 120.00138 * 27.52116 * 18 17 12 20 20 C 1.39947 * 120.00536 * 207.51627 * 18 17 12 21 21 N 1.30819 * 120.00279 * 195.54232 * 20 18 17 22 22 Si 1.86803 * 119.99412 * 15.54513 * 20 18 17 23 23 H 1.48500 * 109.47064 * 266.50473 * 22 20 18 24 24 H 1.48497 * 109.47251 * 26.50903 * 22 20 18 25 25 H 1.48500 * 109.46984 * 146.51089 * 22 20 18 26 26 C 1.50706 * 109.47269 * 294.87618 * 6 3 2 27 27 N 1.34776 * 120.00248 * 276.57235 * 26 6 3 28 28 O 1.21283 * 119.99494 * 96.56739 * 26 6 3 29 29 H 1.08999 * 109.47148 * 60.00306 * 1 2 3 30 30 H 1.09007 * 109.46862 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47280 * 299.99993 * 1 2 3 32 32 H 1.08991 * 109.47671 * 239.99893 * 2 1 3 33 33 H 1.09009 * 109.46782 * 119.99298 * 2 1 3 34 34 H 1.09003 * 109.47151 * 59.99916 * 5 3 2 35 35 H 1.09003 * 109.47676 * 179.97438 * 5 3 2 36 36 H 1.08999 * 109.47349 * 300.00132 * 5 3 2 37 37 H 0.97000 * 120.00488 * 323.21977 * 8 6 3 38 38 H 1.07999 * 119.87865 * 0.02562 * 13 12 9 39 39 H 1.08006 * 119.74564 * 179.69673 * 14 13 12 40 40 H 1.07998 * 119.88102 * 180.02562 * 15 14 13 41 41 H 1.08001 * 120.12568 * 180.02562 * 16 15 14 42 42 H 0.97002 * 119.99818 * 180.02562 * 21 20 18 43 43 H 0.96997 * 119.99870 * 4.88517 * 27 26 6 44 44 H 0.96993 * 119.99841 * 184.89194 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5929 1.9860 0.8323 5 6 1.6548 2.1196 -1.3168 6 6 3.5627 1.4451 0.1484 7 1 3.9349 2.4655 0.0573 8 7 4.1571 0.6130 -0.9006 9 16 5.5899 1.0605 -1.6001 10 8 5.4726 2.4433 -1.9059 11 8 5.8862 0.0711 -2.5762 12 6 6.8378 0.9285 -0.3632 13 6 7.5079 2.0520 0.0647 14 6 8.4946 1.9500 1.0329 15 6 8.8135 0.7193 1.5860 16 6 8.1521 -0.4163 1.1779 17 6 7.1485 -0.3248 0.1956 18 6 6.4618 -1.4848 -0.2311 19 1 6.0500 -1.5324 -1.2284 20 6 6.3156 -2.5713 0.6388 21 7 5.9618 -3.7407 0.1712 22 14 6.6257 -2.3515 2.4678 23 1 8.0339 -2.7070 2.7773 24 1 6.3778 -0.9369 2.8454 25 1 5.7119 -3.2360 3.2345 26 6 3.9367 0.8929 1.4998 27 7 3.9290 1.6964 2.5819 28 8 4.2445 -0.2747 1.6136 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.5699 2.1177 -1.4225 35 1 2.0177 3.1474 -1.3168 36 1 2.1018 1.5761 -2.1492 37 1 3.7114 -0.2000 -1.1856 38 1 7.2674 3.0159 -0.3589 39 1 9.0188 2.8362 1.3592 40 1 9.5837 0.6515 2.3400 41 1 8.4017 -1.3739 1.6103 42 1 5.8602 -4.4936 0.7742 43 1 3.6152 2.6109 2.5046 44 1 4.2374 1.3601 3.4378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364957088.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:39 Heat of formation + Delta-G solvation = -130.036118 kcal Electronic energy + Delta-G solvation = -30239.039822 eV Core-core repulsion = 26281.525456 eV Total energy + Delta-G solvation = -3957.514366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.81465 -39.53648 -38.12982 -37.75673 -36.72752 -35.60712 -34.38102 -34.30804 -32.42853 -31.79093 -30.56497 -27.92561 -27.12872 -24.78837 -23.76078 -22.89852 -21.90910 -20.88096 -20.12478 -19.50277 -18.74975 -18.54423 -18.13767 -17.51062 -17.03664 -16.81805 -16.13178 -15.87712 -15.67679 -15.59513 -15.32167 -15.20743 -14.96231 -14.56255 -14.35363 -13.98897 -13.81020 -13.55716 -13.21121 -13.12158 -13.05122 -12.95460 -12.92192 -12.74333 -12.64301 -12.47211 -12.38425 -12.13451 -11.71282 -11.65409 -11.61337 -11.46326 -11.38309 -11.11247 -10.91323 -10.36630 -10.02385 -9.89783 -9.53783 -8.97494 -6.66019 -0.20141 0.39190 0.84758 1.21104 1.38493 1.50771 1.86115 2.11426 2.26493 2.57590 2.76796 2.99496 3.41202 3.68855 3.80214 3.83955 4.02355 4.22186 4.24207 4.31165 4.32401 4.62035 4.66550 4.66718 4.69092 4.73393 4.76790 4.87822 4.98085 5.13867 5.22372 5.24068 5.24823 5.30718 5.43255 5.54001 5.58023 5.59331 5.72744 5.87325 6.10440 6.11437 6.14059 6.34018 6.57734 6.70552 6.76843 7.62960 8.05867 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011005 B = 0.006935 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.613428 B = 4036.582628 C = 4807.067876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C -0.075 4.075 4 H 0.115 0.885 5 C -0.150 4.150 6 C 0.138 3.862 7 H 0.125 0.875 8 N -1.081 6.081 9 S 2.717 3.283 10 O -0.993 6.993 11 O -1.009 7.009 12 C -0.788 4.788 13 C 0.008 3.992 14 C -0.252 4.252 15 C -0.040 4.040 16 C -0.266 4.266 17 C 0.163 3.837 18 C -0.452 4.452 19 H 0.088 0.912 20 C 0.073 3.927 21 N -0.822 5.822 22 Si 0.979 3.021 23 H -0.278 1.278 24 H -0.235 1.235 25 H -0.297 1.297 26 C 0.486 3.514 27 N -0.844 5.844 28 O -0.538 6.538 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.043 0.957 37 H 0.419 0.581 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.096 0.904 42 H 0.295 0.705 43 H 0.415 0.585 44 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.745 12.819 6.524 17.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.167 4.167 3 C -0.095 4.095 4 H 0.133 0.867 5 C -0.207 4.207 6 C 0.026 3.974 7 H 0.142 0.858 8 N -0.839 5.839 9 S 2.813 3.187 10 O -0.983 6.983 11 O -1.000 7.000 12 C -0.881 4.881 13 C -0.012 4.012 14 C -0.271 4.271 15 C -0.058 4.058 16 C -0.285 4.285 17 C 0.158 3.842 18 C -0.480 4.480 19 H 0.106 0.894 20 C -0.146 4.146 21 N -0.446 5.446 22 Si 0.806 3.194 23 H -0.206 1.206 24 H -0.158 1.158 25 H -0.225 1.225 26 C 0.268 3.732 27 N -0.411 5.411 28 O -0.413 6.413 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.255 0.745 38 H 0.152 0.848 39 H 0.156 0.844 40 H 0.149 0.851 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.246 0.754 44 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -9.508 12.187 5.493 16.404 hybrid contribution 0.566 -1.190 1.369 1.900 sum -8.942 10.997 6.862 15.747 Atomic orbital electron populations 1.21753 0.93784 1.01696 1.02810 1.21604 0.97404 0.96123 1.01548 1.21340 0.89482 0.97363 1.01346 0.86699 1.21918 1.02609 1.00719 0.95472 1.21009 0.97414 0.94869 0.84094 0.85766 1.55053 1.39642 1.37389 1.51856 1.00495 0.72982 0.71781 0.73469 1.93439 1.87003 1.33777 1.84096 1.93483 1.84520 1.61598 1.60381 1.30023 1.27303 0.99609 1.31212 1.20722 0.92150 0.95832 0.92467 1.20908 1.04608 0.97538 1.04084 1.21206 0.96052 0.92519 0.96044 1.21289 1.02840 0.98187 1.06192 1.17074 0.88450 0.90457 0.88223 1.20004 1.29534 0.96990 1.01439 0.89381 1.26688 0.90044 0.92977 1.04938 1.69698 1.33382 1.01490 1.40018 0.85353 0.75816 0.80586 0.77637 1.20585 1.15830 1.22536 1.21483 0.77091 0.86834 0.87762 1.43684 1.68991 1.17022 1.11365 1.90793 1.46448 1.18062 1.85988 0.91206 0.93438 0.91577 0.93135 0.93289 0.89946 0.91187 0.93822 0.74480 0.84837 0.84420 0.85100 0.88650 0.89477 0.75414 0.76797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.68 71.98 0.70 -1.94 16 2 C -0.13 -3.16 4.86 30.60 0.15 -3.01 16 3 C -0.08 -1.55 2.19 -10.80 -0.02 -1.57 16 4 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 5 C -0.15 -2.83 8.85 71.98 0.64 -2.20 16 6 C 0.14 3.83 2.42 44.24 0.11 3.93 16 7 H 0.12 2.99 7.43 -2.39 -0.02 2.98 16 8 N -1.08 -38.98 4.31 -172.54 -0.74 -39.72 16 9 S 2.72 116.96 5.04 -56.49 -0.28 116.68 16 10 O -0.99 -40.64 16.22 -128.00 -2.08 -42.71 16 11 O -1.01 -52.32 15.79 -128.00 -2.02 -54.34 16 12 C -0.79 -35.94 5.96 22.73 0.14 -35.81 16 13 C 0.01 0.32 9.53 22.22 0.21 0.53 16 14 C -0.25 -9.22 10.05 22.46 0.23 -9.00 16 15 C -0.04 -1.58 10.02 22.22 0.22 -1.35 16 16 C -0.27 -12.58 7.07 22.73 0.16 -12.42 16 17 C 0.16 8.27 5.18 -21.29 -0.11 8.16 16 18 C -0.45 -25.11 8.25 23.46 0.19 -24.92 16 19 H 0.09 5.33 5.66 -2.91 -0.02 5.32 16 20 C 0.07 3.95 5.45 85.26 0.46 4.42 16 21 N -0.82 -45.55 13.93 21.83 0.30 -45.25 16 22 Si 0.98 45.87 22.66 68.60 1.55 47.43 16 23 H -0.28 -12.46 6.64 99.48 0.66 -11.80 16 24 H -0.24 -10.97 6.31 99.48 0.63 -10.34 16 25 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 26 C 0.49 15.02 6.48 87.66 0.57 15.59 16 27 N -0.84 -17.95 8.87 -173.53 -1.54 -19.49 16 28 O -0.54 -22.15 14.08 -3.04 -0.04 -22.19 16 29 H 0.07 1.09 6.59 -2.39 -0.02 1.08 16 30 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 1.41 6.65 -2.39 -0.02 1.39 16 33 H 0.05 1.45 6.74 -2.38 -0.02 1.43 16 34 H 0.08 1.19 6.59 -2.39 -0.02 1.18 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.04 0.99 7.76 -2.39 -0.02 0.97 16 37 H 0.42 15.51 6.90 -96.75 -0.67 14.85 16 38 H 0.13 4.63 7.33 -2.91 -0.02 4.60 16 39 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 40 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 41 H 0.10 4.58 4.21 -2.91 -0.01 4.57 16 42 H 0.29 14.82 8.30 -92.71 -0.77 14.05 16 43 H 0.41 5.27 8.83 -92.71 -0.82 4.45 16 44 H 0.40 8.43 8.93 -92.71 -0.83 7.60 16 Total: -1.00 -74.42 357.56 -2.57 -76.99 By element: Atomic # 1 Polarization: 43.56 SS G_CDS: -1.36 Total: 42.20 kcal Atomic # 6 Polarization: -63.24 SS G_CDS: 3.64 Total: -59.61 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -1.98 Total: -104.45 kcal Atomic # 8 Polarization: -115.10 SS G_CDS: -4.14 Total: -119.24 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.55 Total: 47.43 kcal Atomic # 16 Polarization: 116.96 SS G_CDS: -0.28 Total: 116.68 kcal Total: -74.42 -2.57 -76.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364957088.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.042 kcal (2) G-P(sol) polarization free energy of solvation -74.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds