Wall clock time and date at job start Sat Apr 11 2020 05:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46377 * 2 1 4 4 N 1.46506 * 109.46882 * 179.97438 * 3 2 1 5 5 C 1.34774 * 120.00317 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99714 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.00117 * 179.97438 * 5 4 3 8 8 H 1.09006 * 109.46432 * 60.00489 * 7 5 4 9 9 C 1.52998 * 109.47384 * 300.00325 * 7 5 4 10 10 N 1.46497 * 109.47047 * 179.97438 * 7 5 4 11 11 S 1.65598 * 120.00088 * 217.13745 * 10 7 5 12 12 O 1.42095 * 106.40050 * 311.20676 * 11 10 7 13 13 O 1.42100 * 106.40396 * 178.28872 * 11 10 7 14 14 C 1.76196 * 107.22095 * 64.74778 * 11 10 7 15 15 C 1.37642 * 120.13172 * 243.84434 * 14 11 10 16 16 C 1.38614 * 120.24629 * 180.32015 * 15 14 11 17 17 C 1.38656 * 120.50483 * 359.66985 * 16 15 14 18 18 C 1.37600 * 120.24634 * 0.02562 * 17 16 15 19 19 C 1.40705 * 120.12527 * 63.53424 * 14 11 10 20 20 C 1.41392 * 120.24419 * 359.97438 * 19 14 11 21 21 H 1.07999 * 120.00210 * 29.41998 * 20 19 14 22 22 C 1.39947 * 119.99693 * 209.42323 * 20 19 14 23 23 N 1.30825 * 119.99932 * 194.77584 * 22 20 19 24 24 Si 1.86802 * 120.00154 * 14.78104 * 22 20 19 25 25 H 1.48499 * 109.47072 * 266.40337 * 24 22 20 26 26 H 1.48500 * 109.46968 * 26.40630 * 24 22 20 27 27 H 1.48499 * 109.46833 * 146.40565 * 24 22 20 28 28 H 1.09005 * 109.47394 * 299.99284 * 1 2 3 29 29 H 1.08999 * 109.47676 * 60.00305 * 1 2 3 30 30 H 1.09004 * 109.46593 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47002 * 240.00658 * 2 1 3 32 32 H 1.08999 * 109.47171 * 119.99544 * 2 1 3 33 33 H 1.08998 * 109.47017 * 60.00667 * 3 2 1 34 34 H 1.08996 * 109.47579 * 299.99727 * 3 2 1 35 35 H 0.97004 * 119.99427 * 0.02562 * 4 3 2 36 36 H 1.09004 * 109.46780 * 300.00146 * 9 7 5 37 37 H 1.08998 * 109.47046 * 59.99889 * 9 7 5 38 38 H 1.08997 * 109.46802 * 179.97438 * 9 7 5 39 39 H 0.97002 * 119.99867 * 37.12963 * 10 7 5 40 40 H 1.07997 * 119.87235 * 0.02562 * 15 14 11 41 41 H 1.08003 * 119.74483 * 179.69207 * 16 15 14 42 42 H 1.07990 * 119.87556 * 180.02562 * 17 16 15 43 43 H 1.08001 * 120.12487 * 180.02562 * 18 17 16 44 44 H 0.96993 * 120.00430 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.1787 2.6099 0.0002 6 8 3.5722 3.6602 -0.0002 7 6 5.6857 2.6100 0.0014 8 1 6.0497 2.0955 -0.8880 9 6 6.1948 1.8898 1.2516 10 7 6.1740 3.9912 0.0001 11 16 7.5285 4.3898 -0.8652 12 8 8.5183 3.4282 -0.5264 13 8 7.7145 5.7886 -0.6977 14 6 7.1525 4.1382 -2.5680 15 6 7.8329 3.1859 -3.2925 16 6 7.5436 2.9905 -4.6339 17 6 6.5631 3.7453 -5.2597 18 6 5.8660 4.6985 -4.5535 19 6 6.1511 4.9056 -3.1910 20 6 5.4407 5.8818 -2.4551 21 1 5.9155 6.3836 -1.6249 22 6 4.1224 6.1977 -2.8025 23 7 3.5628 7.2812 -2.3287 24 14 3.1616 5.0723 -3.9426 25 1 3.3011 5.5493 -5.3420 26 1 3.6921 3.6894 -3.8356 27 1 1.7277 5.0837 -3.5564 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9563 0.8900 34 1 1.6765 1.9564 -0.8899 35 1 3.9899 0.6027 0.0006 36 1 5.8307 2.4043 2.1409 37 1 5.8315 0.8621 1.2521 38 1 7.2848 1.8895 1.2521 39 1 5.7037 4.6724 0.5059 40 1 8.5982 2.5920 -2.8150 41 1 8.0859 2.2445 -5.1959 42 1 6.3458 3.5843 -6.3052 43 1 5.1024 5.2850 -5.0428 44 1 2.6492 7.5004 -2.5697 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364993349.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:44 Heat of formation + Delta-G solvation = -104.955084 kcal Electronic energy + Delta-G solvation = -29023.569335 eV Core-core repulsion = 25067.142565 eV Total energy + Delta-G solvation = -3956.426771 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.68102 -37.84035 -36.38308 -35.96983 -34.95260 -34.87979 -33.79781 -32.67490 -30.70371 -30.10321 -29.51054 -26.45045 -25.37161 -23.70201 -22.05341 -21.78759 -21.17112 -20.12097 -18.85956 -17.70739 -17.53621 -16.89645 -16.33457 -15.89667 -15.77887 -15.36120 -15.14658 -14.54390 -14.32395 -14.20176 -13.70930 -13.66507 -13.45070 -13.14995 -12.93060 -12.80552 -12.47426 -12.27899 -12.24949 -12.15797 -11.87350 -11.53591 -11.37743 -11.32451 -11.25547 -11.17603 -11.14301 -11.07653 -10.93213 -10.67428 -10.37567 -9.96666 -9.70906 -9.43041 -9.31380 -8.98467 -8.87936 -8.23303 -7.81134 -7.14501 -4.82536 1.45012 2.09768 2.56124 2.88276 2.97859 3.09937 3.16807 3.20807 3.80980 3.85265 4.29749 4.63040 4.65861 4.76255 4.81526 5.03257 5.11367 5.14740 5.25229 5.42270 5.43771 5.46360 5.56046 5.59620 5.80201 5.83351 5.83580 5.92405 5.93033 6.00255 6.17778 6.25701 6.27579 6.43546 6.51358 6.68979 6.98324 7.11885 7.26065 7.44653 7.52066 7.58413 7.69135 7.86868 8.21150 8.34545 8.42876 8.57320 9.84115 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009381 B = 0.005840 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2983.924468 B = 4793.456162 C = 5928.707650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.117 3.883 4 N -0.737 5.737 5 C 0.506 3.494 6 O -0.506 6.506 7 C 0.145 3.855 8 H 0.108 0.892 9 C -0.165 4.165 10 N -1.094 6.094 11 S 2.707 3.293 12 O -0.994 6.994 13 O -0.966 6.966 14 C -0.780 4.780 15 C 0.018 3.982 16 C -0.265 4.265 17 C -0.044 4.044 18 C -0.236 4.236 19 C 0.161 3.839 20 C -0.438 4.438 21 H 0.125 0.875 22 C 0.095 3.905 23 N -0.770 5.770 24 Si 0.917 3.083 25 H -0.270 1.270 26 H -0.244 1.244 27 H -0.288 1.288 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.399 0.601 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.422 0.578 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.409 -14.423 4.260 15.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C -0.006 4.006 4 N -0.391 5.391 5 C 0.290 3.710 6 O -0.379 6.379 7 C 0.032 3.968 8 H 0.126 0.874 9 C -0.224 4.224 10 N -0.851 5.851 11 S 2.803 3.197 12 O -0.984 6.984 13 O -0.956 6.956 14 C -0.875 4.875 15 C -0.002 4.002 16 C -0.285 4.285 17 C -0.063 4.063 18 C -0.255 4.255 19 C 0.156 3.844 20 C -0.464 4.464 21 H 0.142 0.858 22 C -0.130 4.130 23 N -0.391 5.391 24 Si 0.743 3.257 25 H -0.197 1.197 26 H -0.167 1.167 27 H -0.215 1.215 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.233 0.767 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.258 0.742 40 H 0.131 0.869 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.122 0.878 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.182 -13.211 4.658 14.619 hybrid contribution -1.117 -0.610 -1.185 1.739 sum -5.298 -13.822 3.474 15.205 Atomic orbital electron populations 1.21681 0.94720 1.01953 1.02414 1.21733 0.96875 0.96034 1.02656 1.21374 0.79868 0.96856 1.02539 1.45978 1.07094 1.08687 1.77362 1.20880 0.90223 0.83817 0.76125 1.90781 1.69523 1.30870 1.46744 1.20401 0.90998 0.84552 1.00807 0.87379 1.22289 1.03670 0.99485 0.96988 1.55366 1.48953 1.14584 1.66179 1.00977 0.71748 0.72929 0.74018 1.93454 1.57036 1.63670 1.84238 1.93536 1.84428 1.31005 1.86649 1.29778 1.20013 1.15213 1.22488 1.20378 0.93759 0.92072 0.93999 1.20449 1.05577 1.06863 0.95616 1.20803 0.94229 0.93617 0.97609 1.21197 1.05250 1.03845 0.95215 1.17040 0.88362 0.87889 0.91116 1.20317 0.97126 1.14467 1.14476 0.85753 1.26194 0.98205 0.94119 0.94467 1.69637 1.14847 1.20088 1.34489 0.86268 0.77431 0.82991 0.78986 1.19674 1.16684 1.21498 0.92382 0.92314 0.92311 0.91270 0.91336 0.91537 0.91564 0.76721 0.91644 0.91556 0.89820 0.74192 0.86885 0.88222 0.88424 0.87802 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.14 -1.06 6.05 -26.73 -0.16 -1.23 16 3 C 0.12 1.34 5.67 -4.04 -0.02 1.32 16 4 N -0.74 -8.86 5.45 -60.29 -0.33 -9.19 16 5 C 0.51 8.23 7.22 -10.99 -0.08 8.15 16 6 O -0.51 -10.53 16.03 5.56 0.09 -10.44 16 7 C 0.14 2.24 3.20 -69.08 -0.22 2.02 16 8 H 0.11 1.60 7.84 -51.93 -0.41 1.19 16 9 C -0.16 -1.94 9.41 37.16 0.35 -1.59 16 10 N -1.09 -20.55 5.04 -5.88 -0.03 -20.58 16 11 S 2.71 58.41 4.95 -107.50 -0.53 57.87 16 12 O -0.99 -20.98 16.47 -57.17 -0.94 -21.93 16 13 O -0.97 -24.17 15.80 -57.17 -0.90 -25.07 16 14 C -0.78 -18.06 5.79 -38.87 -0.23 -18.28 16 15 C 0.02 0.38 9.53 -39.66 -0.38 0.00 16 16 C -0.26 -5.35 10.05 -39.29 -0.39 -5.75 16 17 C -0.04 -0.92 10.02 -39.66 -0.40 -1.32 16 18 C -0.24 -5.60 7.06 -38.87 -0.27 -5.88 16 19 C 0.16 4.06 5.14 -106.82 -0.55 3.51 16 20 C -0.44 -11.72 8.67 -37.74 -0.33 -12.04 16 21 H 0.12 3.56 5.71 -52.49 -0.30 3.26 16 22 C 0.09 2.46 5.45 -17.34 -0.09 2.37 16 23 N -0.77 -20.26 13.93 55.55 0.77 -19.49 16 24 Si 0.92 20.86 24.42 -169.99 -4.15 16.71 16 25 H -0.27 -5.87 6.66 56.52 0.38 -5.49 16 26 H -0.24 -5.62 6.73 56.52 0.38 -5.24 16 27 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.40 3.43 7.89 -40.82 -0.32 3.10 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.56 7.57 -51.93 -0.39 0.16 16 38 H 0.08 1.05 7.87 -51.93 -0.41 0.64 16 39 H 0.42 8.02 8.28 -34.47 -0.29 7.74 16 40 H 0.11 2.13 7.33 -52.49 -0.38 1.75 16 41 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 42 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.10 2.43 4.42 -52.49 -0.23 2.20 16 44 H 0.29 6.91 8.30 -40.82 -0.34 6.57 16 LS Contribution 372.23 15.07 5.61 5.61 Total: -1.00 -33.20 372.23 -8.96 -42.16 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -6.14 Total: 13.79 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: -2.41 Total: -29.45 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.42 Total: -49.26 kcal Atomic # 8 Polarization: -55.68 SS G_CDS: -1.76 Total: -57.43 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.15 Total: 16.71 kcal Atomic # 16 Polarization: 58.41 SS G_CDS: -0.53 Total: 57.87 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.20 -8.96 -42.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364993349.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.791 kcal (2) G-P(sol) polarization free energy of solvation -33.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds