Wall clock time and date at job start Sat Apr 11 2020 05:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47049 * 2 1 4 4 C 1.50695 * 109.46937 * 240.00094 * 2 1 3 5 5 H 1.07998 * 120.00152 * 240.00108 * 4 2 1 6 6 C 1.37878 * 120.00453 * 59.99810 * 4 2 1 7 7 N 1.31522 * 119.99809 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00490 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46984 * 60.00020 * 8 6 4 10 10 H 1.48505 * 109.47398 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47052 * 300.00474 * 8 6 4 12 12 C 1.52996 * 109.47237 * 120.00008 * 2 1 3 13 13 N 1.46501 * 109.47072 * 300.00078 * 12 2 1 14 14 C 1.34779 * 120.00008 * 179.97438 * 13 12 2 15 15 O 1.21550 * 119.99966 * 359.97438 * 14 13 12 16 16 C 1.47848 * 120.00150 * 179.97438 * 14 13 12 17 17 C 1.39575 * 120.14487 * 180.02562 * 16 14 13 18 18 C 1.37955 * 119.85263 * 180.27853 * 17 16 14 19 19 C 1.38361 * 120.14138 * 359.49245 * 18 17 16 20 20 C 1.50708 * 119.85196 * 180.25817 * 19 18 17 21 21 S 1.81394 * 109.46961 * 270.24829 * 20 19 18 22 22 N 1.65602 * 104.45008 * 179.97438 * 21 20 19 23 23 O 1.42097 * 110.54760 * 291.62762 * 21 20 19 24 24 O 1.42106 * 110.53987 * 68.37954 * 21 20 19 25 25 C 1.38356 * 120.29644 * 0.50649 * 19 18 17 26 26 C 1.37958 * 120.14423 * 359.75425 * 25 19 18 27 27 H 1.09006 * 109.47149 * 299.99901 * 1 2 3 28 28 H 1.08996 * 109.47150 * 59.99949 * 1 2 3 29 29 H 1.08998 * 109.46941 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47050 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46729 * 300.00302 * 3 2 1 32 32 H 1.08997 * 109.47195 * 59.99816 * 3 2 1 33 33 H 0.96993 * 120.00086 * 180.02562 * 7 6 4 34 34 H 1.08997 * 109.47136 * 179.97438 * 12 2 1 35 35 H 1.09007 * 109.47136 * 59.99775 * 12 2 1 36 36 H 0.96996 * 120.00391 * 0.02562 * 13 12 2 37 37 H 1.08002 * 120.07104 * 359.97438 * 17 16 14 38 38 H 1.07998 * 119.92975 * 179.72529 * 18 17 16 39 39 H 1.08997 * 109.46821 * 30.25241 * 20 19 18 40 40 H 1.09000 * 109.46932 * 150.24699 * 20 19 18 41 41 H 0.97003 * 119.99815 * 0.02562 * 22 21 20 42 42 H 0.96996 * 120.00038 * 179.97438 * 22 21 20 43 43 H 1.08006 * 119.93372 * 179.76996 * 25 19 18 44 44 H 1.07997 * 120.07488 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8280 -2.5198 -4.0081 10 1 1.8268 -0.4199 -5.2205 11 1 3.8075 -1.1190 -4.0077 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8769 -0.4914 3.6695 15 8 2.5750 -1.4802 3.7810 16 6 1.3846 0.2059 4.8767 17 6 1.7200 -0.2684 6.1458 18 6 1.2525 0.3835 7.2682 19 6 0.4616 1.5113 7.1377 20 6 -0.0408 2.2217 8.3682 21 16 -1.6387 1.5194 8.8619 22 7 -2.0699 2.3803 10.2093 23 8 -2.6405 1.8386 7.9060 24 8 -1.4742 0.1894 9.3344 25 6 0.1255 1.9866 5.8826 26 6 0.5819 1.3410 4.7521 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9564 0.8899 33 1 0.7089 1.1614 -3.4844 34 1 3.1301 -0.7216 1.2489 35 1 1.6767 -1.7489 1.2492 36 1 0.9938 0.7578 2.3564 37 1 2.3400 -1.1466 6.2490 38 1 1.5076 0.0151 8.2508 39 1 0.6773 2.0963 9.1786 40 1 -0.1618 3.2830 8.1510 41 1 -1.4885 3.0811 10.5437 42 1 -2.9042 2.1843 10.6636 43 1 -0.4954 2.8653 5.7875 44 1 0.3185 1.7128 3.7729 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412215101.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:55 Heat of formation + Delta-G solvation = -90.938282 kcal Electronic energy + Delta-G solvation = -26881.857665 eV Core-core repulsion = 22926.038709 eV Total energy + Delta-G solvation = -3955.818957 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.21633 -38.59437 -37.37172 -36.38547 -36.27624 -33.72858 -33.65405 -33.16732 -31.35011 -30.75445 -28.33125 -25.75164 -25.64724 -24.94795 -23.04213 -22.62781 -20.27870 -19.87244 -18.91684 -18.20817 -17.93791 -17.74321 -16.47945 -16.06840 -15.83127 -15.67312 -15.56332 -15.00901 -14.83774 -14.70268 -14.43967 -13.83566 -13.33947 -13.23714 -13.16270 -12.91278 -12.68330 -12.52420 -12.44302 -12.31063 -12.20894 -12.18142 -11.49678 -11.36967 -11.33433 -11.19479 -10.91927 -10.86223 -10.74276 -10.40983 -10.22190 -9.72518 -9.66102 -9.30918 -9.26716 -9.07723 -8.82187 -8.48337 -8.34070 -6.03311 -4.13461 -0.36353 0.68759 1.10692 2.41637 2.88326 3.20973 3.29803 3.34133 3.37254 3.59403 3.74155 3.79483 3.84893 4.39205 4.42418 4.63411 4.69601 4.81295 4.94849 5.10476 5.23436 5.25792 5.47592 5.49797 5.72257 5.99773 6.04594 6.12530 6.25069 6.29280 6.47203 6.52501 6.56571 6.73145 6.79112 6.90520 6.95849 6.99354 7.32604 7.53281 7.67850 7.96378 7.98797 8.12113 8.36081 8.58151 8.86779 9.52341 10.98162 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025843 B = 0.002127 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.211487 B =13158.696627 C =13696.108960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.130 3.870 13 N -0.708 5.708 14 C 0.544 3.456 15 O -0.545 6.545 16 C -0.110 4.110 17 C -0.061 4.061 18 C -0.111 4.111 19 C -0.085 4.085 20 C -0.574 4.574 21 S 2.609 3.391 22 N -1.254 6.254 23 O -0.953 6.953 24 O -0.955 6.955 25 C -0.108 4.108 26 C -0.085 4.085 27 H 0.005 0.995 28 H 0.086 0.914 29 H 0.028 0.972 30 H 0.027 0.973 31 H 0.086 0.914 32 H 0.005 0.995 33 H 0.261 0.739 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.398 0.602 37 H 0.144 0.856 38 H 0.137 0.863 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.412 0.588 42 H 0.420 0.580 43 H 0.137 0.863 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.794 8.663 25.380 27.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.008 3.992 13 N -0.358 5.358 14 C 0.330 3.670 15 O -0.424 6.424 16 C -0.114 4.114 17 C -0.080 4.080 18 C -0.130 4.130 19 C -0.088 4.088 20 C -0.702 4.702 21 S 2.700 3.300 22 N -0.927 5.927 23 O -0.942 6.942 24 O -0.944 6.944 25 C -0.127 4.127 26 C -0.103 4.103 27 H 0.024 0.976 28 H 0.105 0.895 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.105 0.895 32 H 0.024 0.976 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.234 0.766 37 H 0.162 0.838 38 H 0.154 0.846 39 H 0.164 0.836 40 H 0.165 0.835 41 H 0.237 0.763 42 H 0.250 0.750 43 H 0.155 0.845 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.860 7.256 24.701 26.033 hybrid contribution 0.486 0.751 -0.404 0.981 sum -3.374 8.006 24.297 25.804 Atomic orbital electron populations 1.21848 0.97690 0.99323 1.00104 1.18368 0.92853 0.92775 0.90527 1.21842 0.98659 0.98331 1.00078 1.20927 1.31590 1.12136 0.89824 0.92441 1.24883 0.94846 0.94929 0.98870 1.69789 1.36589 1.22699 1.23376 0.86616 0.79213 0.79797 0.82122 1.20269 1.21335 1.20286 1.21798 0.98321 0.95940 0.83134 1.46281 1.52033 1.31619 1.05905 1.18227 0.80991 0.84356 0.83462 1.90747 1.38562 1.26239 1.86883 1.20348 0.99727 0.96727 0.94603 1.21315 0.97124 0.99078 0.90458 1.21113 0.97425 0.94869 0.99600 1.18964 1.01002 0.96652 0.92132 1.29390 1.22561 1.12172 1.06027 1.05089 0.76413 0.74611 0.73838 1.53208 1.34813 1.54571 1.50129 1.93632 1.54549 1.84167 1.61892 1.93627 1.86130 1.35219 1.79400 1.21081 0.99901 1.00522 0.91229 1.21434 0.95448 0.94086 0.99361 0.97568 0.89485 0.95309 0.95356 0.89490 0.97604 0.92920 0.92410 0.92387 0.76554 0.83848 0.84558 0.83586 0.83541 0.76263 0.74998 0.84483 0.84572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 4 C -0.51 -13.16 8.01 -34.44 -0.28 -13.43 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.43 9.35 55.43 0.52 -22.92 16 8 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 C 0.13 2.76 4.50 -4.04 -0.02 2.74 16 13 N -0.71 -12.68 4.91 -61.25 -0.30 -12.98 16 14 C 0.54 9.68 7.77 -12.33 -0.10 9.58 16 15 O -0.54 -11.43 16.35 5.32 0.09 -11.35 16 16 C -0.11 -1.57 5.87 -104.97 -0.62 -2.18 16 17 C -0.06 -0.77 9.60 -39.19 -0.38 -1.14 16 18 C -0.11 -1.11 9.68 -39.64 -0.38 -1.50 16 19 C -0.09 -0.77 5.15 -104.53 -0.54 -1.31 16 20 C -0.57 -2.71 6.21 36.01 0.22 -2.49 16 21 S 2.61 19.07 5.95 -107.50 -0.64 18.43 16 22 N -1.25 -4.05 9.43 60.35 0.57 -3.48 16 23 O -0.95 -10.92 18.10 -57.54 -1.04 -11.96 16 24 O -0.95 -10.81 18.10 -57.54 -1.04 -11.85 16 25 C -0.11 -1.08 9.68 -39.64 -0.38 -1.46 16 26 C -0.08 -1.01 9.54 -39.18 -0.37 -1.38 16 27 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 28 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 32 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 33 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.40 6.36 4.20 -40.82 -0.17 6.19 16 37 H 0.14 1.78 7.65 -52.49 -0.40 1.38 16 38 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.15 0.26 8.08 -51.93 -0.42 -0.16 16 40 H 0.15 0.27 8.08 -51.92 -0.42 -0.15 16 41 H 0.41 -0.08 8.83 -34.47 -0.30 -0.38 16 42 H 0.42 1.15 8.96 -34.47 -0.31 0.84 16 43 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 44 H 0.14 1.45 6.41 -52.49 -0.34 1.11 16 LS Contribution 373.70 15.07 5.63 5.63 Total: -1.00 -35.90 373.70 -9.43 -45.33 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.78 Total: 4.51 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -2.41 Total: -15.02 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.79 Total: -39.37 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -2.00 Total: -35.16 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 19.07 SS G_CDS: -0.64 Total: 18.43 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.90 -9.43 -45.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412215101.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.608 kcal (2) G-P(sol) polarization free energy of solvation -35.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds