Wall clock time and date at job start Sat Apr 11 2020 05:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46694 * 2 1 4 4 C 1.53001 * 109.47335 * 59.99999 * 3 2 1 5 5 N 1.46503 * 109.47374 * 180.02562 * 3 2 1 6 6 S 1.65597 * 120.00399 * 186.45581 * 5 3 2 7 7 O 1.42101 * 106.40148 * 51.87121 * 6 5 3 8 8 O 1.42095 * 106.40151 * 184.79713 * 6 5 3 9 9 C 1.76196 * 107.21428 * 298.33448 * 6 5 3 10 10 C 1.38243 * 120.00147 * 274.53486 * 9 6 5 11 11 C 1.38235 * 120.00218 * 179.76633 * 10 9 6 12 12 C 1.38239 * 119.99596 * 0.48814 * 11 10 9 13 13 C 1.50706 * 119.99564 * 179.76734 * 12 11 10 14 14 C 1.50702 * 109.46975 * 270.02094 * 13 12 11 15 15 H 1.07998 * 120.00117 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99671 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00091 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99815 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47289 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46863 * 120.00401 * 18 16 14 21 21 H 1.48499 * 109.47397 * 240.00069 * 18 16 14 22 22 C 1.38232 * 120.00275 * 359.78898 * 12 11 10 23 23 C 1.38236 * 120.00128 * 359.95539 * 22 12 11 24 24 C 1.50702 * 109.47234 * 299.99923 * 3 2 1 25 25 N 1.34770 * 120.00275 * 275.00077 * 24 3 2 26 26 O 1.21286 * 119.99551 * 95.00498 * 24 3 2 27 27 H 1.09001 * 109.47858 * 60.00293 * 1 2 3 28 28 H 1.09008 * 109.47092 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47249 * 299.99686 * 1 2 3 30 30 H 1.09003 * 109.47249 * 240.00314 * 2 1 3 31 31 H 1.08996 * 109.47039 * 120.00032 * 2 1 3 32 32 H 1.08996 * 109.47166 * 187.51404 * 4 3 2 33 33 H 1.09002 * 109.47356 * 307.51620 * 4 3 2 34 34 H 1.09009 * 109.46937 * 67.51569 * 4 3 2 35 35 H 0.97006 * 119.99685 * 6.16977 * 5 3 2 36 36 H 1.07995 * 119.99672 * 0.02562 * 10 9 6 37 37 H 1.07996 * 120.00424 * 180.25447 * 11 10 9 38 38 H 1.08995 * 109.47154 * 30.02416 * 13 12 11 39 39 H 1.08997 * 109.46874 * 150.01994 * 13 12 11 40 40 H 0.97005 * 120.00001 * 180.02562 * 17 16 14 41 41 H 1.07998 * 119.99973 * 179.97438 * 22 12 11 42 42 H 1.07995 * 120.00402 * 180.02562 * 23 22 12 43 43 H 0.97001 * 120.00167 * 0.02562 * 25 24 3 44 44 H 0.97002 * 120.00438 * 180.02562 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5299 2.1638 1.2492 5 7 3.5049 1.4427 -0.0006 6 16 4.3329 2.8677 0.1605 7 8 3.8051 3.5104 1.3127 8 8 5.7098 2.5511 0.0093 9 6 3.9012 3.8801 -1.2155 10 6 4.5846 3.7507 -2.4102 11 6 4.2427 4.5416 -3.4912 12 6 3.2241 5.4689 -3.3745 13 6 2.8549 6.3347 -4.5514 14 6 3.6712 7.6010 -4.5191 15 1 4.3862 7.7625 -3.7259 16 6 3.5053 8.5534 -5.5021 17 7 2.6343 8.3570 -6.4677 18 14 4.5166 10.1234 -5.4617 19 1 5.4173 10.1019 -4.2811 20 1 5.3284 10.2213 -6.7013 21 1 3.6087 11.2950 -5.3709 22 6 2.5446 5.6022 -2.1781 23 6 2.8829 4.8077 -1.0987 24 6 1.5375 2.1529 -1.2305 25 7 2.2143 2.0503 -2.3914 26 8 0.5242 2.8171 -1.1759 27 1 -0.3635 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.7792 3.2229 1.1846 33 1 0.4482 2.0488 1.3190 34 1 1.9989 1.7335 2.1342 35 1 3.9899 0.6075 -0.0912 36 1 5.3828 3.0289 -2.5002 37 1 4.7738 4.4377 -4.4258 38 1 3.0572 5.7955 -5.4768 39 1 1.7951 6.5842 -4.5006 40 1 2.5179 9.0269 -7.1595 41 1 1.7491 6.3269 -2.0868 42 1 2.3518 4.9116 -0.1641 43 1 3.0245 1.5188 -2.4351 44 1 1.8911 2.5078 -3.1834 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414349010.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:09 Heat of formation + Delta-G solvation = -119.818781 kcal Electronic energy + Delta-G solvation = -29076.944523 eV Core-core repulsion = 25119.873214 eV Total energy + Delta-G solvation = -3957.071309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.38878 -40.14927 -38.42042 -37.48619 -36.99087 -35.63027 -34.56791 -33.27355 -33.24009 -31.93301 -29.76632 -29.23817 -26.05055 -25.60173 -23.90741 -23.65428 -22.43747 -20.81573 -20.36362 -18.96380 -18.76309 -18.68864 -18.55492 -17.78220 -16.85851 -16.79567 -16.39769 -15.97423 -15.86348 -15.76079 -15.23752 -15.20782 -14.64880 -14.45662 -14.36891 -14.13799 -13.90609 -13.77412 -13.47010 -13.41283 -13.34132 -13.24716 -12.94353 -12.71766 -12.69535 -12.64155 -12.49819 -12.17684 -12.02867 -11.88739 -11.78726 -11.64555 -11.54684 -11.33128 -10.66660 -10.57530 -10.41710 -9.90498 -9.83685 -8.27924 -6.40425 -0.70494 -0.04608 0.43858 1.35781 1.37523 1.49812 1.51887 1.95133 2.33530 2.47245 2.57280 2.82134 3.04877 3.30126 3.64664 3.73866 3.85565 3.95538 4.03126 4.04669 4.18126 4.41104 4.48709 4.50262 4.56649 4.74011 4.84357 4.91775 4.94830 5.01480 5.09589 5.13186 5.15769 5.26243 5.27068 5.33774 5.38642 5.54591 5.66874 5.87184 5.89761 5.94521 6.03358 6.10272 6.47412 6.71958 7.28775 7.33295 8.82178 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018353 B = 0.003492 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.242399 B = 8016.267875 C = 8759.059356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.109 4.109 3 C 0.169 3.831 4 C -0.174 4.174 5 N -1.090 6.090 6 S 2.715 3.285 7 O -0.976 6.976 8 O -0.975 6.975 9 C -0.698 4.698 10 C -0.007 4.007 11 C -0.145 4.145 12 C 0.006 3.994 13 C 0.048 3.952 14 C -0.532 4.532 15 H 0.053 0.947 16 C 0.009 3.991 17 N -0.925 5.925 18 Si 0.963 3.037 19 H -0.268 1.268 20 H -0.273 1.273 21 H -0.278 1.278 22 C -0.150 4.150 23 C -0.011 4.011 24 C 0.501 3.499 25 N -0.834 5.834 26 O -0.563 6.563 27 H 0.038 0.962 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.440 0.560 36 H 0.165 0.835 37 H 0.134 0.866 38 H 0.018 0.982 39 H 0.004 0.996 40 H 0.267 0.733 41 H 0.109 0.891 42 H 0.130 0.870 43 H 0.412 0.588 44 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.812 -22.338 12.805 25.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.148 4.148 3 C 0.077 3.923 4 C -0.232 4.232 5 N -0.855 5.855 6 S 2.806 3.194 7 O -0.966 6.966 8 O -0.965 6.965 9 C -0.785 4.785 10 C -0.026 4.026 11 C -0.164 4.164 12 C 0.005 3.995 13 C 0.012 3.988 14 C -0.570 4.570 15 H 0.071 0.929 16 C -0.189 4.189 17 N -0.564 5.564 18 Si 0.788 3.212 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.203 1.203 22 C -0.169 4.169 23 C -0.031 4.031 24 C 0.283 3.717 25 N -0.397 5.397 26 O -0.441 6.441 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.129 0.871 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.280 0.720 36 H 0.183 0.817 37 H 0.152 0.848 38 H 0.036 0.964 39 H 0.023 0.977 40 H 0.076 0.924 41 H 0.127 0.873 42 H 0.148 0.852 43 H 0.243 0.757 44 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 0.583 -21.511 13.556 25.433 hybrid contribution 0.116 1.373 -1.620 2.127 sum 0.699 -20.138 11.936 23.420 Atomic orbital electron populations 1.21908 0.94729 1.02972 1.02172 1.21788 0.96750 0.90213 1.06086 1.20518 0.78961 1.00160 0.92694 1.22539 1.03397 1.01358 0.95953 1.55391 1.13803 1.25158 1.91161 1.01108 0.72096 0.72832 0.73338 1.93567 1.79889 1.75952 1.47189 1.93568 1.31732 1.84051 1.87143 1.30634 1.10782 1.18587 1.18518 1.20976 0.95307 0.96615 0.89684 1.21233 0.97945 0.97013 1.00213 1.20681 0.92134 0.91506 0.95153 1.18250 0.95851 0.93398 0.91349 1.21324 1.22298 1.03097 1.10285 0.92863 1.25850 0.96428 1.01823 0.94846 1.70061 1.35905 1.36538 1.13945 0.85424 0.78598 0.78833 0.78373 1.19213 1.19854 1.20338 1.21070 1.01510 1.00881 0.93439 1.20745 0.92740 0.91756 0.97825 1.21207 0.83960 0.80364 0.86125 1.43914 1.30180 1.53608 1.12013 1.90771 1.26436 1.41313 1.85550 0.94290 0.90130 0.91845 0.88612 0.87080 0.91948 0.89640 0.89052 0.72032 0.81729 0.84818 0.96359 0.97739 0.92436 0.87321 0.85183 0.75711 0.76768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.27 71.98 0.67 -1.34 16 2 C -0.11 -1.01 5.10 30.59 0.16 -0.85 16 3 C 0.17 2.69 0.86 2.86 0.00 2.70 16 4 C -0.17 -3.44 6.71 71.98 0.48 -2.95 16 5 N -1.09 -14.36 4.78 -155.18 -0.74 -15.10 16 6 S 2.72 61.83 5.64 -56.49 -0.32 61.51 16 7 O -0.98 -27.80 13.88 -128.00 -1.78 -29.58 16 8 O -0.97 -25.35 17.41 -128.00 -2.23 -27.58 16 9 C -0.70 -19.11 3.43 22.27 0.08 -19.04 16 10 C -0.01 -0.18 8.22 22.27 0.18 0.01 16 11 C -0.15 -4.79 9.70 22.27 0.22 -4.57 16 12 C 0.01 0.23 5.07 -19.86 -0.10 0.13 16 13 C 0.05 2.46 5.10 29.10 0.15 2.61 16 14 C -0.53 -29.63 9.09 25.60 0.23 -29.40 16 15 H 0.05 2.96 7.74 -2.91 -0.02 2.93 16 16 C 0.01 0.53 5.46 84.65 0.46 0.99 16 17 N -0.93 -54.39 13.29 21.45 0.28 -54.11 16 18 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 22 C -0.15 -5.84 9.70 22.27 0.22 -5.62 16 23 C -0.01 -0.37 7.68 22.27 0.17 -0.20 16 24 C 0.50 11.07 3.29 87.66 0.29 11.36 16 25 N -0.83 -15.18 6.24 -173.53 -1.08 -16.26 16 26 O -0.56 -17.44 16.17 -3.05 -0.05 -17.49 16 27 H 0.04 0.69 6.83 -2.39 -0.02 0.67 16 28 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.06 0.84 6.27 -2.39 -0.01 0.83 16 30 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 1.59 5.49 -2.39 -0.01 1.57 16 33 H 0.08 1.63 6.01 -2.39 -0.01 1.61 16 34 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.44 2.38 8.61 -96.74 -0.83 1.55 16 36 H 0.17 3.10 7.73 -2.91 -0.02 3.07 16 37 H 0.13 4.19 8.06 -2.91 -0.02 4.16 16 38 H 0.02 0.96 8.09 -2.39 -0.02 0.94 16 39 H 0.00 0.24 8.09 -2.39 -0.02 0.22 16 40 H 0.27 14.70 8.31 -92.70 -0.77 13.93 16 41 H 0.11 4.47 8.06 -2.91 -0.02 4.44 16 42 H 0.13 4.18 6.90 -2.91 -0.02 4.16 16 43 H 0.41 4.71 7.75 -92.71 -0.72 3.99 16 44 H 0.40 8.58 8.93 -92.71 -0.83 7.75 16 Total: -1.00 -76.07 362.36 -2.00 -78.07 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -1.32 Total: 20.81 kcal Atomic # 6 Polarization: -49.38 SS G_CDS: 3.20 Total: -46.18 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -1.54 Total: -85.47 kcal Atomic # 8 Polarization: -70.59 SS G_CDS: -4.05 Total: -74.65 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 61.83 SS G_CDS: -0.32 Total: 61.51 kcal Total: -76.07 -2.00 -78.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414349010.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.747 kcal (2) G-P(sol) polarization free energy of solvation -76.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds