Wall clock time and date at job start Sat Apr 11 2020 05:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47214 * 2 1 4 4 C 1.53000 * 109.47300 * 119.99561 * 2 1 3 5 5 N 1.46496 * 109.47357 * 179.97438 * 4 2 1 6 6 C 1.34779 * 120.00026 * 179.97438 * 5 4 2 7 7 O 1.21588 * 120.00022 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99980 * 180.02562 * 6 5 4 9 9 C 1.39953 * 119.99903 * 174.29065 * 8 6 5 10 10 C 1.39287 * 119.94940 * 145.42371 * 9 8 6 11 11 C 1.38481 * 120.43245 * 179.97438 * 10 9 8 12 12 C 1.37683 * 120.32061 * 0.29710 * 11 10 9 13 13 C 1.40743 * 119.88406 * 359.43539 * 12 11 10 14 14 C 1.41406 * 120.21220 * 180.31834 * 13 12 11 15 15 H 1.08004 * 119.99969 * 214.42080 * 14 13 12 16 16 C 1.39928 * 120.00348 * 34.41769 * 14 13 12 17 17 N 1.30833 * 119.99647 * 5.54276 * 16 14 13 18 18 Si 1.86798 * 120.00358 * 185.54048 * 16 14 13 19 19 H 1.48503 * 109.46824 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47145 * 120.00132 * 18 16 14 21 21 H 1.48496 * 109.47571 * 239.99997 * 18 16 14 22 22 C 1.38244 * 119.94721 * 325.39680 * 9 8 6 23 23 S 1.81396 * 109.47333 * 239.99739 * 2 1 3 24 24 C 1.81396 * 101.92302 * 59.99864 * 23 2 1 25 25 O 1.42094 * 108.58231 * 174.48941 * 23 2 1 26 26 O 1.42106 * 108.57892 * 305.51071 * 23 2 1 27 27 H 1.09006 * 109.47407 * 300.00495 * 1 2 3 28 28 H 1.08999 * 109.47091 * 60.00310 * 1 2 3 29 29 H 1.08996 * 109.47460 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47243 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46947 * 299.99492 * 3 2 1 32 32 H 1.08992 * 109.47346 * 59.99323 * 3 2 1 33 33 H 1.09004 * 109.46964 * 60.00320 * 4 2 1 34 34 H 1.08997 * 109.47420 * 300.00280 * 4 2 1 35 35 H 0.96997 * 119.99927 * 0.02562 * 5 4 2 36 36 H 0.96995 * 120.00130 * 354.29199 * 8 6 5 37 37 H 1.07999 * 119.77992 * 359.97438 * 10 9 8 38 38 H 1.08001 * 119.83985 * 180.02562 * 11 10 9 39 39 H 1.08009 * 120.05758 * 179.70093 * 12 11 10 40 40 H 0.97009 * 119.99920 * 179.97438 * 17 16 14 41 41 H 1.07999 * 120.15653 * 359.97438 * 22 9 8 42 42 H 1.09002 * 109.47440 * 60.00097 * 24 23 2 43 43 H 1.08995 * 109.47455 * 180.02562 * 24 23 2 44 44 H 1.09003 * 109.47536 * 300.00513 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5049 -0.7217 1.2490 6 6 4.1788 -1.3049 2.2601 7 8 3.5709 -1.8309 3.1722 8 7 5.5266 -1.3049 2.2601 9 6 6.2264 -1.8030 3.3650 10 6 7.4346 -2.4708 3.1796 11 6 8.1356 -2.9672 4.2658 12 6 7.6421 -2.8113 5.5417 13 6 6.4253 -2.1338 5.7450 14 6 5.9155 -1.9638 7.0529 15 1 4.8491 -1.9804 7.2232 16 6 6.7925 -1.7740 8.1266 17 7 8.0760 -1.6453 7.9079 18 14 6.1308 -1.7043 9.8721 19 1 4.6559 -1.8756 9.8495 20 1 6.7427 -2.7918 10.6772 21 1 6.4679 -0.3908 10.4773 22 6 5.7176 -1.6311 4.6389 23 16 2.1346 -0.8552 -1.4810 24 6 1.4229 0.1513 -2.8118 25 8 3.5495 -0.7331 -1.5284 26 8 1.5479 -2.1486 -1.5283 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8898 33 1 1.6767 -1.7489 1.2493 34 1 1.6767 -0.2073 2.1392 35 1 3.9899 -0.3017 0.5215 36 1 6.0116 -0.9597 1.4943 37 1 7.8273 -2.6022 2.1821 38 1 9.0717 -3.4831 4.1111 39 1 8.1899 -3.2044 6.3854 40 1 8.6840 -1.5133 8.6522 41 1 4.7812 -1.1127 4.7837 42 1 1.7893 1.1746 -2.7292 43 1 1.7152 -0.2629 -3.7767 44 1 0.3360 0.1469 -2.7291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434723110.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:23 Heat of formation + Delta-G solvation = -74.656573 kcal Electronic energy + Delta-G solvation = -27532.662809 eV Core-core repulsion = 23577.549880 eV Total energy + Delta-G solvation = -3955.112929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.03012 -37.91994 -37.42358 -36.83646 -36.40027 -34.30925 -33.52646 -32.80182 -30.06826 -29.71320 -28.20550 -28.01937 -26.09269 -25.16301 -22.25388 -21.62061 -20.78658 -20.03413 -18.97949 -18.02207 -17.69266 -17.19040 -16.56886 -16.27802 -15.80377 -15.32599 -15.13919 -14.83003 -14.63152 -14.38708 -14.07748 -13.88625 -13.69787 -13.50891 -13.37114 -13.15052 -12.85147 -12.74853 -12.62591 -12.41713 -12.36896 -12.11589 -11.91493 -11.75697 -11.58156 -11.41531 -11.09724 -11.07960 -10.87001 -10.55559 -10.37164 -10.16077 -9.60472 -9.39725 -9.18199 -8.99295 -8.90619 -7.28578 -6.80279 -6.53519 -4.27319 -0.49044 2.23194 2.75211 2.87726 3.01774 3.16415 3.17860 3.22863 3.26124 3.51783 3.74508 3.86497 3.96989 4.06819 4.27385 4.33934 4.48745 4.61404 4.80035 4.87889 4.94638 5.08913 5.11167 5.18844 5.33982 5.52606 5.53695 5.61038 5.75777 6.30271 6.44113 6.47047 6.81818 6.86580 7.11142 7.17126 7.32215 7.41004 7.77350 7.87257 8.04959 8.21182 8.32706 8.48165 8.76302 8.97494 9.06963 9.09745 10.40245 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020941 B = 0.002543 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.752557 B =11006.613755 C =11855.027024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.551 4.551 3 C -0.141 4.141 4 C 0.160 3.840 5 N -0.765 5.765 6 C 0.703 3.297 7 O -0.565 6.565 8 N -0.679 5.679 9 C 0.163 3.837 10 C -0.250 4.250 11 C -0.097 4.097 12 C -0.159 4.159 13 C 0.120 3.880 14 C -0.464 4.464 15 H 0.076 0.924 16 C 0.072 3.928 17 N -0.812 5.812 18 Si 0.911 3.089 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.276 1.276 22 C -0.199 4.199 23 S 2.420 3.580 24 C -0.660 4.660 25 O -0.932 6.932 26 O -0.929 6.929 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.403 0.597 36 H 0.397 0.603 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.118 0.882 40 H 0.276 0.724 41 H 0.107 0.893 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.240 8.613 -19.855 25.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.641 4.641 3 C -0.199 4.199 4 C 0.034 3.966 5 N -0.428 5.428 6 C 0.403 3.597 7 O -0.440 6.440 8 N -0.325 5.325 9 C 0.071 3.929 10 C -0.272 4.272 11 C -0.116 4.116 12 C -0.179 4.179 13 C 0.117 3.883 14 C -0.495 4.495 15 H 0.095 0.905 16 C -0.143 4.143 17 N -0.440 5.440 18 Si 0.736 3.264 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.202 1.202 22 C -0.221 4.221 23 S 2.600 3.400 24 C -0.809 4.809 25 O -0.929 6.929 26 O -0.926 6.926 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.241 0.759 36 H 0.231 0.769 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.136 0.864 40 H 0.087 0.913 41 H 0.125 0.875 42 H 0.150 0.850 43 H 0.149 0.851 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.090 7.437 -18.954 24.205 hybrid contribution -0.209 1.267 0.028 1.285 sum -13.298 8.704 -18.926 24.714 Atomic orbital electron populations 1.21757 0.88361 1.04737 1.04802 1.30027 1.07367 1.09228 1.17497 1.21840 1.02529 0.90759 1.04760 1.20905 0.79783 1.00803 0.95103 1.45475 1.06282 1.63763 1.27278 1.15849 0.82096 0.79477 0.82277 1.90982 1.67531 1.49133 1.36359 1.42566 1.04137 1.65433 1.20395 1.17261 0.92594 0.97903 0.85139 1.20102 0.98804 1.10863 0.97414 1.20481 0.97981 0.99979 0.93127 1.21362 0.99075 1.02346 0.95106 1.17505 0.90964 0.87567 0.92225 1.19541 0.94425 1.44364 0.91155 0.90542 1.25835 0.94537 0.92793 1.01094 1.69797 1.03264 1.37574 1.33338 0.86220 0.80229 0.78268 0.81672 1.18583 1.19965 1.20168 1.21108 1.02965 1.07599 0.90439 1.08247 0.76321 0.77067 0.78339 1.30348 1.14244 1.16777 1.19556 1.93540 1.26955 1.86972 1.85421 1.93610 1.79279 1.34256 1.85435 0.89477 0.90852 0.89918 0.90406 0.91025 0.89465 0.89780 0.88925 0.75923 0.76929 0.89113 0.88927 0.86433 0.91311 0.87484 0.84990 0.85064 0.85048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.61 8.22 37.15 0.31 -0.31 16 2 C -0.55 -3.77 0.62 -90.62 -0.06 -3.83 16 3 C -0.14 -0.70 8.05 37.16 0.30 -0.40 16 4 C 0.16 1.81 4.56 -4.04 -0.02 1.79 16 5 N -0.77 -10.72 4.86 -65.23 -0.32 -11.04 16 6 C 0.70 13.62 8.28 -86.91 -0.72 12.90 16 7 O -0.56 -13.35 14.13 5.29 0.07 -13.28 16 8 N -0.68 -13.16 5.34 -14.27 -0.08 -13.24 16 9 C 0.16 3.88 6.25 -83.76 -0.52 3.35 16 10 C -0.25 -5.74 9.97 -39.10 -0.39 -6.13 16 11 C -0.10 -2.32 10.02 -39.69 -0.40 -2.72 16 12 C -0.16 -4.29 8.62 -38.84 -0.33 -4.63 16 13 C 0.12 3.40 5.50 -106.85 -0.59 2.81 16 14 C -0.46 -13.11 9.04 -37.74 -0.34 -13.46 16 15 H 0.08 2.14 7.85 -52.48 -0.41 1.73 16 16 C 0.07 1.91 5.31 -17.34 -0.09 1.82 16 17 N -0.81 -21.90 10.97 55.55 0.61 -21.29 16 18 Si 0.91 19.82 29.56 -169.99 -5.03 14.79 16 19 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 22 C -0.20 -5.35 8.39 -38.68 -0.32 -5.67 16 23 S 2.42 19.72 4.28 -107.50 -0.46 19.26 16 24 C -0.66 -2.26 9.72 101.05 0.98 -1.27 16 25 O -0.93 -10.24 15.63 -57.83 -0.90 -11.15 16 26 O -0.93 -11.22 17.91 -57.83 -1.04 -12.25 16 27 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.11 6.56 -51.93 -0.34 -0.23 16 29 H 0.08 0.41 8.06 -51.93 -0.42 0.00 16 30 H 0.08 0.45 6.78 -51.93 -0.35 0.10 16 31 H 0.07 0.13 6.56 -51.93 -0.34 -0.21 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.40 4.78 5.17 -40.82 -0.21 4.57 16 36 H 0.40 6.21 8.84 -40.82 -0.36 5.85 16 37 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.09 1.96 8.06 -52.49 -0.42 1.54 16 39 H 0.12 3.25 6.48 -52.48 -0.34 2.91 16 40 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 41 H 0.11 2.95 6.51 -52.49 -0.34 2.61 16 42 H 0.13 0.18 6.87 -51.92 -0.36 -0.18 16 43 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.13 0.18 6.87 -51.92 -0.36 -0.18 16 LS Contribution 368.21 15.07 5.55 5.55 Total: -1.00 -37.38 368.21 -9.71 -47.09 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -5.92 Total: 11.30 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -2.20 Total: -15.74 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.22 Total: -45.56 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -1.86 Total: -36.67 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.79 kcal Atomic # 16 Polarization: 19.72 SS G_CDS: -0.46 Total: 19.26 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.38 -9.71 -47.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434723110.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.566 kcal (2) G-P(sol) polarization free energy of solvation -37.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds