Wall clock time and date at job start Sat Apr 11 2020 05:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47214 * 2 1 4 4 C 1.53000 * 109.47300 * 119.99561 * 2 1 3 5 5 N 1.46496 * 109.47357 * 179.97438 * 4 2 1 6 6 C 1.34779 * 120.00026 * 179.97438 * 5 4 2 7 7 O 1.21588 * 120.00022 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99980 * 180.02562 * 6 5 4 9 9 C 1.39953 * 119.99903 * 174.29065 * 8 6 5 10 10 C 1.39287 * 119.94940 * 145.42371 * 9 8 6 11 11 C 1.38481 * 120.43245 * 179.97438 * 10 9 8 12 12 C 1.37683 * 120.32061 * 0.29710 * 11 10 9 13 13 C 1.40743 * 119.88406 * 359.43539 * 12 11 10 14 14 C 1.41406 * 120.21220 * 180.31834 * 13 12 11 15 15 H 1.08004 * 119.99969 * 214.42080 * 14 13 12 16 16 C 1.39928 * 120.00348 * 34.41769 * 14 13 12 17 17 N 1.30833 * 119.99647 * 5.54276 * 16 14 13 18 18 Si 1.86798 * 120.00358 * 185.54048 * 16 14 13 19 19 H 1.48503 * 109.46824 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47145 * 120.00132 * 18 16 14 21 21 H 1.48496 * 109.47571 * 239.99997 * 18 16 14 22 22 C 1.38244 * 119.94721 * 325.39680 * 9 8 6 23 23 S 1.81396 * 109.47333 * 239.99739 * 2 1 3 24 24 C 1.81396 * 101.92302 * 59.99864 * 23 2 1 25 25 O 1.42094 * 108.58231 * 174.48941 * 23 2 1 26 26 O 1.42106 * 108.57892 * 305.51071 * 23 2 1 27 27 H 1.09006 * 109.47407 * 300.00495 * 1 2 3 28 28 H 1.08999 * 109.47091 * 60.00310 * 1 2 3 29 29 H 1.08996 * 109.47460 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47243 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46947 * 299.99492 * 3 2 1 32 32 H 1.08992 * 109.47346 * 59.99323 * 3 2 1 33 33 H 1.09004 * 109.46964 * 60.00320 * 4 2 1 34 34 H 1.08997 * 109.47420 * 300.00280 * 4 2 1 35 35 H 0.96997 * 119.99927 * 0.02562 * 5 4 2 36 36 H 0.96995 * 120.00130 * 354.29199 * 8 6 5 37 37 H 1.07999 * 119.77992 * 359.97438 * 10 9 8 38 38 H 1.08001 * 119.83985 * 180.02562 * 11 10 9 39 39 H 1.08009 * 120.05758 * 179.70093 * 12 11 10 40 40 H 0.97009 * 119.99920 * 179.97438 * 17 16 14 41 41 H 1.07999 * 120.15653 * 359.97438 * 22 9 8 42 42 H 1.09002 * 109.47440 * 60.00097 * 24 23 2 43 43 H 1.08995 * 109.47455 * 180.02562 * 24 23 2 44 44 H 1.09003 * 109.47536 * 300.00513 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5049 -0.7217 1.2490 6 6 4.1788 -1.3049 2.2601 7 8 3.5709 -1.8309 3.1722 8 7 5.5266 -1.3049 2.2601 9 6 6.2264 -1.8030 3.3650 10 6 7.4346 -2.4708 3.1796 11 6 8.1356 -2.9672 4.2658 12 6 7.6421 -2.8113 5.5417 13 6 6.4253 -2.1338 5.7450 14 6 5.9155 -1.9638 7.0529 15 1 4.8491 -1.9804 7.2232 16 6 6.7925 -1.7740 8.1266 17 7 8.0760 -1.6453 7.9079 18 14 6.1308 -1.7043 9.8721 19 1 4.6559 -1.8756 9.8495 20 1 6.7427 -2.7918 10.6772 21 1 6.4679 -0.3908 10.4773 22 6 5.7176 -1.6311 4.6389 23 16 2.1346 -0.8552 -1.4810 24 6 1.4229 0.1513 -2.8118 25 8 3.5495 -0.7331 -1.5284 26 8 1.5479 -2.1486 -1.5283 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8898 33 1 1.6767 -1.7489 1.2493 34 1 1.6767 -0.2073 2.1392 35 1 3.9899 -0.3017 0.5215 36 1 6.0116 -0.9597 1.4943 37 1 7.8273 -2.6022 2.1821 38 1 9.0717 -3.4831 4.1111 39 1 8.1899 -3.2044 6.3854 40 1 8.6840 -1.5133 8.6522 41 1 4.7812 -1.1127 4.7837 42 1 1.7893 1.1746 -2.7292 43 1 1.7152 -0.2629 -3.7767 44 1 0.3360 0.1469 -2.7291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434723110.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:22 Heat of formation + Delta-G solvation = -103.683007 kcal Electronic energy + Delta-G solvation = -27533.921490 eV Core-core repulsion = 23577.549880 eV Total energy + Delta-G solvation = -3956.371609 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.57984 -39.40641 -38.19867 -38.04665 -37.10477 -36.15723 -34.97240 -34.38737 -31.73056 -30.59488 -29.81299 -28.39451 -27.33114 -27.00774 -23.46748 -22.81203 -22.69217 -21.69608 -19.82932 -19.60311 -19.19184 -18.03853 -17.61134 -17.19372 -16.98359 -16.82332 -16.57231 -16.42489 -16.05375 -15.78243 -15.11276 -14.85114 -14.69889 -14.61945 -14.17921 -14.04783 -13.89757 -13.81190 -13.68285 -13.52224 -13.20598 -13.10110 -12.98329 -12.91776 -12.86274 -12.83233 -12.39516 -12.29013 -12.17998 -12.05111 -11.95207 -11.53053 -11.26884 -11.14544 -11.09697 -10.80145 -10.30096 -9.31710 -8.73010 -8.51612 -6.39297 -1.05057 0.90383 1.00358 1.36757 1.46022 1.52375 1.55279 1.72195 2.09057 2.23969 2.58818 2.79394 2.92032 3.17646 3.28391 3.52421 3.69912 3.81377 4.08881 4.19762 4.33580 4.45880 4.52703 4.60856 4.63803 4.66661 4.73784 4.77747 4.97191 5.01622 5.07014 5.12950 5.14106 5.19446 5.26580 5.27986 5.33605 5.66595 5.82308 6.02086 6.08310 6.14708 6.36604 6.69449 6.95384 6.96035 7.01624 7.48247 8.42956 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020941 B = 0.002543 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.752557 B =11006.613755 C =11855.027024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.533 4.533 3 C -0.148 4.148 4 C 0.147 3.853 5 N -0.743 5.743 6 C 0.697 3.303 7 O -0.613 6.613 8 N -0.671 5.671 9 C 0.169 3.831 10 C -0.241 4.241 11 C -0.093 4.093 12 C -0.183 4.183 13 C 0.090 3.910 14 C -0.506 4.506 15 H 0.061 0.939 16 C 0.033 3.967 17 N -0.838 5.838 18 Si 0.986 3.014 19 H -0.266 1.266 20 H -0.260 1.260 21 H -0.263 1.263 22 C -0.224 4.224 23 S 2.396 3.604 24 C -0.632 4.632 25 O -0.973 6.973 26 O -0.983 6.983 27 H 0.092 0.908 28 H 0.115 0.885 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.416 0.584 36 H 0.417 0.583 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.103 0.897 40 H 0.286 0.714 41 H 0.085 0.915 42 H 0.165 0.835 43 H 0.143 0.857 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.942 10.655 -22.288 28.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.624 4.624 3 C -0.206 4.206 4 C 0.022 3.978 5 N -0.406 5.406 6 C 0.397 3.603 7 O -0.492 6.492 8 N -0.319 5.319 9 C 0.075 3.925 10 C -0.263 4.263 11 C -0.111 4.111 12 C -0.203 4.203 13 C 0.087 3.913 14 C -0.537 4.537 15 H 0.079 0.921 16 C -0.179 4.179 17 N -0.465 5.465 18 Si 0.806 3.194 19 H -0.190 1.190 20 H -0.185 1.185 21 H -0.187 1.187 22 C -0.246 4.246 23 S 2.583 3.417 24 C -0.786 4.786 25 O -0.969 6.969 26 O -0.980 6.980 27 H 0.111 0.889 28 H 0.134 0.866 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.134 0.866 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.256 0.744 36 H 0.255 0.745 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.121 0.879 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.183 0.817 43 H 0.161 0.839 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.763 9.479 -21.447 27.189 hybrid contribution -0.045 0.691 0.573 0.899 sum -13.808 10.170 -20.874 27.015 Atomic orbital electron populations 1.21930 0.86189 1.04872 1.07238 1.29915 1.08931 1.09542 1.14053 1.22006 1.02052 0.89403 1.07096 1.21147 0.77957 1.00688 0.98013 1.45360 1.07457 1.61917 1.25849 1.16118 0.82043 0.79417 0.82734 1.90953 1.68426 1.51254 1.38553 1.42380 1.04334 1.65258 1.19954 1.17344 0.92916 0.96962 0.85292 1.20517 0.97838 1.08889 0.99021 1.20849 0.98994 0.99155 0.92137 1.21317 0.99135 1.03700 0.96170 1.17833 0.92109 0.88475 0.92852 1.19686 0.94136 1.47243 0.92636 0.92119 1.26666 0.94636 0.91623 1.05021 1.69841 1.04259 1.37359 1.35074 0.85116 0.79142 0.79110 0.75984 1.19040 1.18461 1.18723 1.21046 1.02605 1.09005 0.91937 1.08505 0.75815 0.77356 0.79989 1.30127 1.15740 1.16639 1.16074 1.93481 1.29538 1.87621 1.86291 1.93550 1.79665 1.38252 1.86521 0.88877 0.86611 0.91047 0.91430 0.86610 0.89315 0.91710 0.89218 0.74385 0.74540 0.85070 0.85555 0.87869 0.90336 0.89634 0.81733 0.83897 0.81984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 8.22 71.98 0.59 -0.33 16 2 C -0.53 -6.47 0.62 -10.80 -0.01 -6.48 16 3 C -0.15 -1.03 8.05 71.98 0.58 -0.45 16 4 C 0.15 3.45 4.56 86.38 0.39 3.84 16 5 N -0.74 -21.33 4.86 -478.53 -2.33 -23.66 16 6 C 0.70 27.99 8.28 179.05 1.48 29.48 16 7 O -0.61 -30.77 14.13 -3.99 -0.06 -30.82 16 8 N -0.67 -26.18 5.34 -317.31 -1.70 -27.87 16 9 C 0.17 8.12 6.25 38.10 0.24 8.36 16 10 C -0.24 -10.75 9.97 22.58 0.23 -10.53 16 11 C -0.09 -4.40 10.02 22.20 0.22 -4.17 16 12 C -0.18 -10.20 8.62 22.75 0.20 -10.01 16 13 C 0.09 5.36 5.50 -21.31 -0.12 5.25 16 14 C -0.51 -30.35 9.04 23.46 0.21 -30.14 16 15 H 0.06 3.67 7.85 -2.91 -0.02 3.64 16 16 C 0.03 1.80 5.31 85.25 0.45 2.25 16 17 N -0.84 -46.29 10.97 21.82 0.24 -46.05 16 18 Si 0.99 41.62 29.56 68.60 2.03 43.65 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 20 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 21 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 22 C -0.22 -12.66 8.39 22.85 0.19 -12.47 16 23 S 2.40 35.79 4.28 -56.49 -0.24 35.55 16 24 C -0.63 -1.20 9.72 113.37 1.10 -0.09 16 25 O -0.97 -20.71 15.63 -127.37 -1.99 -22.70 16 26 O -0.98 -24.12 17.91 -127.37 -2.28 -26.40 16 27 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.12 -0.24 6.56 -2.39 -0.02 -0.25 16 29 H 0.07 0.65 8.06 -2.39 -0.02 0.63 16 30 H 0.07 0.63 6.78 -2.39 -0.02 0.62 16 31 H 0.12 -0.21 6.56 -2.38 -0.02 -0.23 16 32 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.42 9.81 5.17 -92.71 -0.48 9.34 16 36 H 0.42 12.62 8.84 -92.71 -0.82 11.80 16 37 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 38 H 0.13 5.07 8.06 -2.91 -0.02 5.05 16 39 H 0.10 5.94 6.48 -2.91 -0.02 5.92 16 40 H 0.29 14.20 8.30 -92.70 -0.77 13.43 16 41 H 0.09 5.09 6.51 -2.91 -0.02 5.08 16 42 H 0.16 -0.65 6.87 -2.39 -0.02 -0.67 16 43 H 0.14 0.17 8.14 -2.39 -0.02 0.15 16 44 H 0.16 -0.57 6.87 -2.39 -0.02 -0.59 16 Total: -1.00 -89.29 368.21 -0.81 -90.11 By element: Atomic # 1 Polarization: 33.96 SS G_CDS: -0.25 Total: 33.71 kcal Atomic # 6 Polarization: -31.28 SS G_CDS: 5.76 Total: -25.51 kcal Atomic # 7 Polarization: -93.79 SS G_CDS: -3.78 Total: -97.58 kcal Atomic # 8 Polarization: -75.60 SS G_CDS: -4.33 Total: -79.93 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 16 Polarization: 35.79 SS G_CDS: -0.24 Total: 35.55 kcal Total: -89.29 -0.81 -90.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434723110.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.577 kcal (2) G-P(sol) polarization free energy of solvation -89.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds