Wall clock time and date at job start Sat Apr 11 2020 05:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46934 * 2 1 4 4 H 1.08999 * 109.47387 * 303.68142 * 3 2 1 5 5 C 1.50709 * 109.47236 * 183.68558 * 3 2 1 6 6 H 1.07998 * 119.99640 * 240.00359 * 5 3 2 7 7 C 1.37877 * 119.99816 * 59.99861 * 5 3 2 8 8 N 1.31509 * 120.00236 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99817 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46988 * 89.99916 * 9 7 5 11 11 H 1.48493 * 109.47113 * 209.99749 * 9 7 5 12 12 H 1.48503 * 109.46951 * 329.99921 * 9 7 5 13 13 N 1.46501 * 109.47356 * 63.68468 * 3 2 1 14 14 S 1.65597 * 119.99988 * 215.38884 * 13 3 2 15 15 O 1.42095 * 104.27693 * 180.02562 * 14 13 3 16 16 O 1.42104 * 104.27874 * 307.88640 * 14 13 3 17 17 C 1.81407 * 104.44963 * 63.95646 * 14 13 3 18 18 C 1.50694 * 109.47063 * 182.43449 * 17 14 13 19 19 C 1.38360 * 119.85315 * 269.72478 * 18 17 14 20 20 C 1.37954 * 120.14796 * 179.72576 * 19 18 17 21 21 C 1.39582 * 119.85310 * 0.54976 * 20 19 18 22 22 C 1.47840 * 120.14683 * 179.70698 * 21 20 19 23 23 O 1.21555 * 119.99773 * 180.02562 * 22 21 20 24 24 N 1.34778 * 120.00178 * 0.02562 * 22 21 20 25 25 C 1.46498 * 120.00050 * 180.02562 * 24 22 21 26 26 C 1.39579 * 119.70791 * 359.72246 * 21 20 19 27 27 C 1.37963 * 119.85266 * 0.02562 * 26 21 20 28 28 H 1.09003 * 109.46909 * 54.49521 * 1 2 3 29 29 H 1.08998 * 109.47180 * 174.49342 * 1 2 3 30 30 H 1.08998 * 109.47688 * 294.49893 * 1 2 3 31 31 H 1.09005 * 109.47685 * 239.99950 * 2 1 3 32 32 H 1.08998 * 109.47121 * 119.99512 * 2 1 3 33 33 H 0.96995 * 120.00156 * 179.97438 * 8 7 5 34 34 H 0.96990 * 119.99926 * 35.11322 * 13 3 2 35 35 H 1.09006 * 109.46878 * 302.43153 * 17 14 13 36 36 H 1.08999 * 109.47181 * 62.42668 * 17 14 13 37 37 H 1.07999 * 119.92658 * 0.02562 * 19 18 17 38 38 H 1.08007 * 120.08000 * 180.25077 * 20 19 18 39 39 H 0.96999 * 119.99888 * 0.02562 * 24 22 21 40 40 H 1.08995 * 109.47125 * 300.00111 * 25 24 22 41 41 H 1.08999 * 109.46938 * 59.99961 * 25 24 22 42 42 H 1.09003 * 109.47255 * 180.02562 * 25 24 22 43 43 H 1.08000 * 120.07527 * 179.97438 * 26 21 20 44 44 H 1.07996 * 119.92686 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6237 1.9751 -0.8551 5 6 3.5442 1.4436 -0.0913 6 1 4.1325 1.8941 0.6943 7 6 4.1693 0.8693 -1.1779 8 7 3.4528 0.3202 -2.1342 9 14 6.0339 0.8700 -1.2907 10 1 6.5691 -0.3572 -0.6482 11 1 6.4434 0.9004 -2.7177 12 1 6.5714 2.0673 -0.5958 13 7 1.6254 2.1071 1.2381 14 16 1.2195 3.7124 1.2202 15 8 0.8792 4.0028 2.5689 16 8 2.3246 4.3463 0.5907 17 6 -0.2506 3.7959 0.1607 18 6 -0.6852 5.2316 0.0169 19 6 -1.5909 5.7702 0.9136 20 6 -1.9887 7.0854 0.7910 21 6 -1.4841 7.8700 -0.2473 22 6 -1.9110 9.2784 -0.3886 23 8 -1.4702 9.9591 -1.2941 24 7 -2.7887 9.8076 0.4866 25 6 -3.2121 11.2030 0.3462 26 6 -0.5751 7.3190 -1.1519 27 6 -0.1816 6.0038 -1.0149 28 1 -0.3633 0.5969 -0.8366 29 1 -0.3633 -1.0229 -0.0986 30 1 -0.3634 0.4261 0.9351 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 3.8926 -0.0835 -2.8988 34 1 1.5848 1.6058 2.0674 35 1 -0.0138 3.3878 -0.8220 36 1 -1.0561 3.2156 0.6105 37 1 -1.9837 5.1609 1.7141 38 1 -2.6927 7.5058 1.4940 39 1 -3.1401 9.2645 1.2094 40 1 -2.3421 11.8557 0.4186 41 1 -3.6907 11.3417 -0.6232 42 1 -3.9181 11.4500 1.1391 43 1 -0.1813 7.9205 -1.9577 44 1 0.5214 5.5760 -1.7143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475172173.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:30 Heat of formation + Delta-G solvation = -90.080706 kcal Electronic energy + Delta-G solvation = -27343.714063 eV Core-core repulsion = 23387.932294 eV Total energy + Delta-G solvation = -3955.781769 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.42323 -38.71119 -36.59304 -36.01551 -35.32844 -34.99292 -33.22839 -32.20868 -31.19907 -30.69075 -28.62460 -26.69337 -26.42724 -23.11403 -23.01949 -22.60945 -20.63895 -20.26879 -18.84113 -18.47827 -17.17731 -16.74016 -16.47756 -16.04501 -15.64171 -15.49461 -15.23619 -15.09957 -15.03444 -14.58108 -13.87543 -13.78808 -13.53026 -13.42204 -13.16543 -13.05107 -12.70348 -12.67738 -12.56245 -12.02900 -11.93929 -11.70743 -11.54560 -11.38078 -11.26047 -11.21997 -10.96691 -10.83982 -10.78026 -10.25334 -10.24117 -9.91407 -9.87783 -9.74377 -9.51245 -9.19839 -8.88599 -8.46288 -8.24426 -6.10142 -4.15814 0.36182 0.95277 1.17458 2.62694 2.87151 3.29799 3.36688 3.39198 3.46181 3.64464 4.13237 4.35390 4.40796 4.43036 4.58498 4.66324 4.76515 4.90113 5.15041 5.15490 5.18781 5.22222 5.36673 5.43201 5.48590 5.68771 5.81634 5.98369 5.99269 6.03776 6.03935 6.14889 6.20242 6.29775 6.38366 6.64217 6.68388 6.82773 7.00644 7.12213 7.49688 7.58992 7.85094 7.90179 8.05014 8.20029 8.88437 9.50696 10.94450 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017899 B = 0.002785 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.982963 B =10050.387858 C =10657.721550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C 0.278 3.722 4 H 0.039 0.961 5 C -0.517 4.517 6 H 0.065 0.935 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.271 1.271 13 N -1.102 6.102 14 S 2.609 3.391 15 O -0.978 6.978 16 O -0.933 6.933 17 C -0.605 4.605 18 C -0.051 4.051 19 C -0.118 4.118 20 C -0.085 4.085 21 C -0.141 4.141 22 C 0.561 3.439 23 O -0.535 6.535 24 N -0.734 5.734 25 C 0.088 3.912 26 C -0.054 4.054 27 C -0.111 4.111 28 H 0.044 0.956 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.107 0.893 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.406 0.594 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.129 0.871 39 H 0.402 0.598 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.142 0.858 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.886 10.812 5.491 19.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C 0.174 3.826 4 H 0.057 0.943 5 C -0.556 4.556 6 H 0.083 0.917 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.196 1.196 13 N -0.862 5.862 14 S 2.698 3.302 15 O -0.968 6.968 16 O -0.923 6.923 17 C -0.729 4.729 18 C -0.053 4.053 19 C -0.137 4.137 20 C -0.104 4.104 21 C -0.144 4.144 22 C 0.348 3.652 23 O -0.412 6.412 24 N -0.386 5.386 25 C -0.056 4.056 26 C -0.072 4.072 27 C -0.130 4.130 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.125 0.875 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.239 0.761 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.147 0.853 39 H 0.237 0.763 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.160 0.840 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.103 12.029 4.913 19.924 hybrid contribution 0.189 -0.993 0.136 1.020 sum -14.914 11.036 5.050 19.228 Atomic orbital electron populations 1.21882 0.99131 0.99956 0.99892 1.21907 0.91812 0.99496 1.03623 1.18594 0.94872 0.90001 0.79155 0.94343 1.21525 0.91085 1.36705 1.06335 0.91664 1.24898 0.98667 0.94972 0.95384 1.69817 1.35242 1.38487 1.09883 0.86505 0.85263 0.78534 0.77274 1.20695 1.21152 1.19612 1.55609 1.82150 1.29795 1.18624 1.05058 0.76163 0.74354 0.74632 1.93524 1.85753 1.84317 1.33247 1.93638 1.45814 1.74858 1.78012 1.29940 1.23585 0.99627 1.19797 1.19321 0.97088 0.92897 0.95971 1.21107 0.97607 0.95603 0.99393 1.21204 0.98823 0.93785 0.96566 1.19925 1.01929 0.93644 0.98921 1.18322 0.78465 0.86850 0.81518 1.90780 1.55440 1.62046 1.32931 1.45713 1.46647 1.14077 1.32203 1.21557 1.00230 0.81533 1.02286 1.21295 0.93828 0.94541 0.97577 1.21312 0.99851 0.93895 0.97921 0.93703 0.94259 0.94353 0.87508 0.93822 0.92691 0.76100 0.83392 0.84161 0.84482 0.85296 0.76294 0.92017 0.92066 0.90519 0.84014 0.83865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.72 37.15 0.36 -2.10 16 2 C -0.13 -2.63 5.37 -26.73 -0.14 -2.77 16 3 C 0.28 6.14 2.08 -69.08 -0.14 6.00 16 4 H 0.04 0.88 7.03 -51.93 -0.36 0.51 16 5 C -0.52 -13.52 8.84 -34.44 -0.30 -13.83 16 6 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 7 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 8 N -0.90 -23.76 11.30 55.43 0.63 -23.14 16 9 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 13 N -1.10 -20.62 4.84 -5.88 -0.03 -20.65 16 14 S 2.61 46.97 5.36 -107.50 -0.58 46.40 16 15 O -0.98 -18.59 18.08 -57.54 -1.04 -19.63 16 16 O -0.93 -20.85 17.84 -57.54 -1.03 -21.88 16 17 C -0.61 -8.27 6.08 36.00 0.22 -8.05 16 18 C -0.05 -0.69 5.15 -104.54 -0.54 -1.22 16 19 C -0.12 -1.35 9.68 -39.64 -0.38 -1.74 16 20 C -0.09 -0.85 9.54 -39.18 -0.37 -1.22 16 21 C -0.14 -1.68 5.87 -104.97 -0.62 -2.30 16 22 C 0.56 6.76 7.77 -12.33 -0.10 6.67 16 23 O -0.53 -8.31 16.35 5.32 0.09 -8.23 16 24 N -0.73 -5.95 5.66 -68.05 -0.39 -6.34 16 25 C 0.09 0.57 10.70 59.85 0.64 1.21 16 26 C -0.05 -0.70 9.60 -39.18 -0.38 -1.08 16 27 C -0.11 -1.52 9.68 -39.64 -0.38 -1.90 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.54 7.87 -51.93 -0.41 0.13 16 31 H 0.11 2.50 5.98 -51.93 -0.31 2.18 16 32 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.26 6.72 8.31 -40.82 -0.34 6.39 16 34 H 0.41 6.79 8.80 -34.46 -0.30 6.49 16 35 H 0.15 1.97 7.26 -51.92 -0.38 1.59 16 36 H 0.14 1.50 8.08 -51.92 -0.42 1.08 16 37 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 38 H 0.13 0.78 6.41 -52.48 -0.34 0.44 16 39 H 0.40 2.08 6.86 -40.82 -0.28 1.80 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.14 1.78 7.65 -52.49 -0.40 1.38 16 44 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 382.68 15.07 5.77 5.77 Total: -1.00 -34.48 382.68 -9.96 -44.43 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -6.13 Total: 8.01 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -2.23 Total: -20.79 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 0.21 Total: -50.13 kcal Atomic # 8 Polarization: -47.76 SS G_CDS: -1.98 Total: -49.74 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 46.97 SS G_CDS: -0.58 Total: 46.40 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.48 -9.96 -44.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475172173.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.646 kcal (2) G-P(sol) polarization free energy of solvation -34.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds