Wall clock time and date at job start Sat Apr 11 2020 05:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46934 * 2 1 4 4 H 1.08999 * 109.47387 * 303.68142 * 3 2 1 5 5 C 1.50709 * 109.47236 * 183.68558 * 3 2 1 6 6 H 1.07998 * 119.99640 * 240.00359 * 5 3 2 7 7 C 1.37877 * 119.99816 * 59.99861 * 5 3 2 8 8 N 1.31509 * 120.00236 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99817 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46988 * 89.99916 * 9 7 5 11 11 H 1.48493 * 109.47113 * 209.99749 * 9 7 5 12 12 H 1.48503 * 109.46951 * 329.99921 * 9 7 5 13 13 N 1.46501 * 109.47356 * 63.68468 * 3 2 1 14 14 S 1.65597 * 119.99988 * 215.38884 * 13 3 2 15 15 O 1.42095 * 104.27693 * 180.02562 * 14 13 3 16 16 O 1.42104 * 104.27874 * 307.88640 * 14 13 3 17 17 C 1.81407 * 104.44963 * 63.95646 * 14 13 3 18 18 C 1.50694 * 109.47063 * 182.43449 * 17 14 13 19 19 C 1.38360 * 119.85315 * 269.72478 * 18 17 14 20 20 C 1.37954 * 120.14796 * 179.72576 * 19 18 17 21 21 C 1.39582 * 119.85310 * 0.54976 * 20 19 18 22 22 C 1.47840 * 120.14683 * 179.70698 * 21 20 19 23 23 O 1.21555 * 119.99773 * 180.02562 * 22 21 20 24 24 N 1.34778 * 120.00178 * 0.02562 * 22 21 20 25 25 C 1.46498 * 120.00050 * 180.02562 * 24 22 21 26 26 C 1.39579 * 119.70791 * 359.72246 * 21 20 19 27 27 C 1.37963 * 119.85266 * 0.02562 * 26 21 20 28 28 H 1.09003 * 109.46909 * 54.49521 * 1 2 3 29 29 H 1.08998 * 109.47180 * 174.49342 * 1 2 3 30 30 H 1.08998 * 109.47688 * 294.49893 * 1 2 3 31 31 H 1.09005 * 109.47685 * 239.99950 * 2 1 3 32 32 H 1.08998 * 109.47121 * 119.99512 * 2 1 3 33 33 H 0.96995 * 120.00156 * 179.97438 * 8 7 5 34 34 H 0.96990 * 119.99926 * 35.11322 * 13 3 2 35 35 H 1.09006 * 109.46878 * 302.43153 * 17 14 13 36 36 H 1.08999 * 109.47181 * 62.42668 * 17 14 13 37 37 H 1.07999 * 119.92658 * 0.02562 * 19 18 17 38 38 H 1.08007 * 120.08000 * 180.25077 * 20 19 18 39 39 H 0.96999 * 119.99888 * 0.02562 * 24 22 21 40 40 H 1.08995 * 109.47125 * 300.00111 * 25 24 22 41 41 H 1.08999 * 109.46938 * 59.99961 * 25 24 22 42 42 H 1.09003 * 109.47255 * 180.02562 * 25 24 22 43 43 H 1.08000 * 120.07527 * 179.97438 * 26 21 20 44 44 H 1.07996 * 119.92686 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6237 1.9751 -0.8551 5 6 3.5442 1.4436 -0.0913 6 1 4.1325 1.8941 0.6943 7 6 4.1693 0.8693 -1.1779 8 7 3.4528 0.3202 -2.1342 9 14 6.0339 0.8700 -1.2907 10 1 6.5691 -0.3572 -0.6482 11 1 6.4434 0.9004 -2.7177 12 1 6.5714 2.0673 -0.5958 13 7 1.6254 2.1071 1.2381 14 16 1.2195 3.7124 1.2202 15 8 0.8792 4.0028 2.5689 16 8 2.3246 4.3463 0.5907 17 6 -0.2506 3.7959 0.1607 18 6 -0.6852 5.2316 0.0169 19 6 -1.5909 5.7702 0.9136 20 6 -1.9887 7.0854 0.7910 21 6 -1.4841 7.8700 -0.2473 22 6 -1.9110 9.2784 -0.3886 23 8 -1.4702 9.9591 -1.2941 24 7 -2.7887 9.8076 0.4866 25 6 -3.2121 11.2030 0.3462 26 6 -0.5751 7.3190 -1.1519 27 6 -0.1816 6.0038 -1.0149 28 1 -0.3633 0.5969 -0.8366 29 1 -0.3633 -1.0229 -0.0986 30 1 -0.3634 0.4261 0.9351 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 3.8926 -0.0835 -2.8988 34 1 1.5848 1.6058 2.0674 35 1 -0.0138 3.3878 -0.8220 36 1 -1.0561 3.2156 0.6105 37 1 -1.9837 5.1609 1.7141 38 1 -2.6927 7.5058 1.4940 39 1 -3.1401 9.2645 1.2094 40 1 -2.3421 11.8557 0.4186 41 1 -3.6907 11.3417 -0.6232 42 1 -3.9181 11.4500 1.1391 43 1 -0.1813 7.9205 -1.9577 44 1 0.5214 5.5760 -1.7143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001475172173.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:29 Heat of formation + Delta-G solvation = -116.323474 kcal Electronic energy + Delta-G solvation = -27344.852035 eV Core-core repulsion = 23387.932294 eV Total energy + Delta-G solvation = -3956.919741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.33202 -39.64483 -38.13378 -37.64513 -36.87126 -35.81338 -34.22970 -34.12050 -32.16221 -32.11120 -29.55559 -28.48947 -27.21821 -24.83100 -23.93797 -23.54235 -21.89546 -21.52162 -20.25366 -19.34146 -18.74675 -18.46314 -17.48812 -17.35489 -17.13391 -16.53720 -16.33894 -16.26481 -15.97283 -15.89957 -15.40304 -14.87382 -14.74537 -14.57939 -14.39546 -14.20002 -13.71682 -13.67212 -13.49037 -13.32357 -13.13736 -13.09872 -13.02690 -12.97872 -12.94739 -12.67826 -12.56549 -12.15765 -12.12857 -12.07437 -11.60920 -11.51681 -11.36863 -11.21107 -10.43777 -10.31274 -10.11433 -10.04941 -9.73765 -8.09864 -6.20606 -0.85428 -0.17163 0.25660 1.39858 1.43147 1.52867 1.68738 1.97356 2.14242 2.45892 2.69339 2.87000 3.16287 3.28890 3.34715 3.67560 3.71881 3.88186 4.06999 4.23703 4.40990 4.44027 4.47949 4.50742 4.61916 4.66958 4.71494 4.75010 4.91797 4.92305 4.94599 5.09828 5.18598 5.22126 5.31187 5.33846 5.43208 5.44019 5.70928 5.71857 5.84318 6.05826 6.32346 6.43515 6.49617 6.85696 7.10407 7.47399 8.91807 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017899 B = 0.002785 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.982963 B =10050.387858 C =10657.721550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C 0.282 3.718 4 H 0.031 0.969 5 C -0.538 4.538 6 H 0.044 0.956 7 C 0.023 3.977 8 N -0.908 5.908 9 Si 0.940 3.060 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.283 1.283 13 N -1.102 6.102 14 S 2.606 3.394 15 O -0.990 6.990 16 O -0.991 6.991 17 C -0.576 4.576 18 C -0.073 4.073 19 C -0.117 4.117 20 C -0.071 4.071 21 C -0.145 4.145 22 C 0.555 3.445 23 O -0.580 6.580 24 N -0.715 5.715 25 C 0.082 3.918 26 C -0.071 4.071 27 C -0.128 4.128 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.041 0.959 33 H 0.264 0.736 34 H 0.414 0.586 35 H 0.151 0.849 36 H 0.182 0.818 37 H 0.168 0.832 38 H 0.176 0.824 39 H 0.419 0.581 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.117 0.883 43 H 0.134 0.866 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.994 10.939 7.204 23.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.177 3.823 4 H 0.048 0.952 5 C -0.578 4.578 6 H 0.062 0.938 7 C -0.177 4.177 8 N -0.548 5.548 9 Si 0.767 3.233 10 H -0.197 1.197 11 H -0.205 1.205 12 H -0.208 1.208 13 N -0.861 5.861 14 S 2.702 3.298 15 O -0.980 6.980 16 O -0.981 6.981 17 C -0.705 4.705 18 C -0.076 4.076 19 C -0.136 4.136 20 C -0.089 4.089 21 C -0.149 4.149 22 C 0.343 3.657 23 O -0.461 6.461 24 N -0.367 5.367 25 C -0.061 4.061 26 C -0.090 4.090 27 C -0.147 4.147 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.248 0.752 35 H 0.170 0.830 36 H 0.199 0.801 37 H 0.185 0.815 38 H 0.194 0.806 39 H 0.257 0.743 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.136 0.864 43 H 0.152 0.848 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.188 12.125 6.711 22.866 hybrid contribution 1.051 -0.897 -0.361 1.429 sum -17.136 11.228 6.349 21.448 Atomic orbital electron populations 1.21809 0.95519 1.01381 1.01537 1.21723 0.95067 0.97576 1.01998 1.18348 0.92551 0.91279 0.80134 0.95176 1.21849 0.93663 1.36417 1.05862 0.93793 1.25454 1.01640 0.95132 0.95485 1.69898 1.36050 1.38815 1.10016 0.85834 0.81970 0.78219 0.77313 1.19653 1.20542 1.20833 1.55359 1.83005 1.29728 1.18034 1.04832 0.76859 0.73404 0.74663 1.93497 1.86085 1.84158 1.34277 1.93572 1.49955 1.75782 1.78795 1.29610 1.21255 1.01059 1.18581 1.19438 0.98545 0.92620 0.96951 1.21534 0.96480 0.96444 0.99164 1.21662 0.98310 0.92976 0.95983 1.20094 1.01573 0.94007 0.99209 1.18440 0.78877 0.86735 0.81630 1.90760 1.57365 1.62993 1.35015 1.45640 1.44857 1.14885 1.31340 1.21756 1.00593 0.80226 1.03534 1.21328 0.94904 0.94475 0.98320 1.21352 1.00309 0.94397 0.98640 0.93161 0.92789 0.91793 0.90580 0.94019 0.92646 0.75167 0.83050 0.80082 0.81471 0.80643 0.74254 0.93105 0.92826 0.86440 0.84828 0.84741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.35 9.72 71.98 0.70 -3.65 16 2 C -0.12 -4.99 5.37 30.59 0.16 -4.83 16 3 C 0.28 12.56 2.08 44.25 0.09 12.65 16 4 H 0.03 1.40 7.03 -2.39 -0.02 1.38 16 5 C -0.54 -28.93 8.84 25.60 0.23 -28.70 16 6 H 0.04 2.48 7.81 -2.91 -0.02 2.46 16 7 C 0.02 1.22 5.30 84.66 0.45 1.67 16 8 N -0.91 -48.94 11.30 21.45 0.24 -48.70 16 9 Si 0.94 43.95 29.54 68.60 2.03 45.98 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 13 N -1.10 -40.80 4.84 -172.51 -0.83 -41.63 16 14 S 2.61 92.67 5.36 -56.49 -0.30 92.37 16 15 O -0.99 -36.31 18.08 -127.65 -2.31 -38.62 16 16 O -0.99 -45.87 17.84 -127.65 -2.28 -48.15 16 17 C -0.58 -14.46 6.08 71.23 0.43 -14.03 16 18 C -0.07 -1.84 5.15 -19.81 -0.10 -1.94 16 19 C -0.12 -2.24 9.68 22.23 0.22 -2.03 16 20 C -0.07 -1.15 9.54 22.53 0.21 -0.94 16 21 C -0.15 -3.26 5.87 -20.09 -0.12 -3.38 16 22 C 0.56 12.73 7.77 86.78 0.67 13.40 16 23 O -0.58 -18.29 16.35 -3.89 -0.06 -18.35 16 24 N -0.71 -9.54 5.66 -487.48 -2.76 -12.30 16 25 C 0.08 0.86 10.70 127.77 1.37 2.23 16 26 C -0.07 -1.90 9.60 22.53 0.22 -1.69 16 27 C -0.13 -3.54 9.68 22.23 0.22 -3.32 16 28 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.58 7.87 -2.39 -0.02 1.56 16 31 H 0.08 3.57 5.98 -2.38 -0.01 3.56 16 32 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.26 13.64 8.31 -92.71 -0.77 12.87 16 34 H 0.41 13.55 8.80 -96.76 -0.85 12.70 16 35 H 0.15 3.82 7.26 -2.39 -0.02 3.80 16 36 H 0.18 3.04 8.08 -2.39 -0.02 3.02 16 37 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 38 H 0.18 1.09 6.41 -2.91 -0.02 1.07 16 39 H 0.42 2.47 6.86 -92.71 -0.64 1.83 16 40 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.12 0.28 8.14 -2.39 -0.02 0.27 16 43 H 0.13 3.64 7.65 -2.91 -0.02 3.61 16 44 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -78.52 382.68 -1.98 -80.50 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: -0.45 Total: 23.45 kcal Atomic # 6 Polarization: -39.29 SS G_CDS: 4.75 Total: -34.54 kcal Atomic # 7 Polarization: -99.28 SS G_CDS: -3.35 Total: -102.63 kcal Atomic # 8 Polarization: -100.47 SS G_CDS: -4.65 Total: -105.12 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: 92.67 SS G_CDS: -0.30 Total: 92.37 kcal Total: -78.52 -1.98 -80.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475172173.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.820 kcal (2) G-P(sol) polarization free energy of solvation -78.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds