Wall clock time and date at job start Sat Apr 11 2020 05:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47309 * 2 1 4 4 C 1.47196 * 109.47275 * 120.00187 * 2 1 3 5 5 C 2.64594 * 109.47226 * 120.00367 * 2 1 3 6 6 C 4.07792 * 109.47213 * 120.00334 * 2 1 3 7 7 O 1.21618 * 120.00166 * 214.23277 * 6 5 4 8 8 N 1.34776 * 120.00279 * 34.23144 * 6 5 4 9 9 C 1.46497 * 120.00404 * 180.02562 * 8 6 5 10 10 H 1.09001 * 110.78415 * 31.75515 * 9 8 6 11 11 C 1.54327 * 110.71583 * 268.52253 * 9 8 6 12 12 N 1.47029 * 107.26790 * 219.44194 * 11 9 8 13 13 C 1.34773 * 125.64802 * 178.99157 * 12 11 9 14 14 O 1.21288 * 120.00122 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00203 * 180.02562 * 13 12 11 16 16 S 1.81001 * 109.47301 * 179.97438 * 15 13 12 17 17 C 1.76196 * 99.99988 * 179.97438 * 16 15 13 18 18 H 1.07995 * 119.99903 * 0.02562 * 17 16 15 19 19 C 1.38806 * 119.99917 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99702 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 119.99833 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47201 * 90.00224 * 21 19 17 23 23 H 1.48504 * 109.47085 * 210.00229 * 21 19 17 24 24 H 1.48507 * 109.47440 * 329.99690 * 21 19 17 25 25 C 1.47418 * 108.70495 * 358.93814 * 12 11 9 26 26 C 1.54915 * 104.83107 * 24.13113 * 25 12 11 27 27 H 1.09002 * 111.00539 * 81.06145 * 26 25 12 28 28 O 1.42903 * 111.03771 * 204.89809 * 26 25 12 29 29 H 1.08997 * 109.46863 * 300.00002 * 1 2 3 30 30 H 1.08997 * 109.47201 * 59.99410 * 1 2 3 31 31 H 1.08997 * 109.47201 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47110 * 240.00454 * 2 1 3 33 33 H 1.09005 * 109.46766 * 59.99728 * 3 2 1 34 34 H 1.08993 * 109.47453 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.47471 * 300.00425 * 3 2 1 36 36 H 0.96996 * 119.99643 * 0.02562 * 8 6 5 37 37 H 1.08993 * 109.88730 * 338.85786 * 11 9 8 38 38 H 1.09003 * 109.88555 * 100.03056 * 11 9 8 39 39 H 1.09000 * 109.46797 * 299.99397 * 15 13 12 40 40 H 1.08997 * 109.47378 * 59.99494 * 15 13 12 41 41 H 0.97007 * 119.99644 * 179.97438 * 20 19 17 42 42 H 1.08995 * 110.37279 * 265.29528 * 25 12 11 43 43 H 1.08997 * 110.36990 * 142.96726 * 25 12 11 44 44 H 0.96698 * 114.00266 * 295.39754 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0207 -0.6939 1.2018 5 6 2.4121 -1.2474 2.1603 6 6 2.8894 -1.9225 3.3295 7 8 3.5238 -1.3115 4.1681 8 7 2.6356 -3.2351 3.5006 9 6 3.1235 -3.9256 4.6970 10 1 3.1518 -3.2479 5.5502 11 6 4.5155 -4.5414 4.4424 12 7 4.5405 -5.8532 5.1060 13 6 5.5757 -6.7160 5.1016 14 8 6.5982 -6.4336 4.5134 15 6 5.4626 -8.0324 5.8266 16 16 7.0047 -8.9607 5.6358 17 6 6.6048 -10.4102 6.5542 18 1 5.6356 -10.5032 7.0214 19 6 7.5352 -11.4331 6.6764 20 7 7.2362 -12.5161 7.3621 21 14 9.2113 -11.2725 5.8677 22 1 10.1590 -10.6332 6.8156 23 1 9.7140 -12.6202 5.4986 24 1 9.0935 -10.4365 4.6460 25 6 3.2460 -6.0677 5.7780 26 6 2.2466 -5.1666 5.0105 27 1 1.9104 -5.6494 4.0929 28 8 1.1356 -4.8132 5.8368 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8899 36 1 2.1300 -3.7225 2.8316 37 1 4.6762 -4.6646 3.3715 38 1 5.2881 -3.8981 4.8637 39 1 5.2769 -7.8494 6.8849 40 1 4.6379 -8.6085 5.4072 41 1 7.8863 -13.2311 7.4471 42 1 3.3059 -5.7634 6.8229 43 1 2.9485 -7.1136 5.7031 44 1 0.5860 -5.5643 6.0994 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489336429.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:53 Heat of formation + Delta-G solvation = -67.946712 kcal Electronic energy + Delta-G solvation = -25768.566451 eV Core-core repulsion = 21813.744484 eV Total energy + Delta-G solvation = -3954.821967 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.72836 -39.51549 -38.05437 -36.90677 -35.86205 -34.63855 -32.49743 -32.47071 -30.73192 -29.14062 -28.19100 -27.78485 -25.66763 -24.89467 -23.51369 -22.14817 -21.38091 -19.70255 -19.21490 -18.04007 -17.78540 -17.12839 -16.69469 -16.18731 -15.88757 -15.55428 -15.37949 -15.09028 -14.98192 -14.71278 -14.34139 -14.09219 -14.03738 -13.78299 -13.31330 -13.09401 -12.84862 -12.83186 -12.81840 -12.57608 -12.36723 -12.08058 -11.99832 -11.98402 -11.30728 -11.23689 -11.04179 -11.03394 -10.76529 -10.70095 -10.65900 -10.53676 -9.91531 -9.78310 -9.51306 -9.03604 -8.75414 -8.54474 -6.96729 -6.32355 -4.04743 1.15953 1.82976 2.42137 2.66885 2.83987 3.05613 3.13052 3.31307 3.47771 3.49175 3.61032 3.67528 3.98836 4.23577 4.30296 4.37075 4.48617 4.50817 4.54300 4.63868 4.82660 4.86141 4.96796 5.03232 5.06609 5.08636 5.20548 5.21636 5.25298 5.38750 5.44854 5.51050 5.59797 5.60620 5.63639 5.70407 5.89813 5.92916 6.13247 6.79848 6.92870 7.10102 7.38422 7.67408 7.90503 8.30974 8.37532 9.13783 10.76727 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021675 B = 0.001881 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.479967 B =14881.936995 C =15575.375149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.006 3.994 3 C -0.148 4.148 4 C -0.067 4.067 5 C -0.227 4.227 6 C 0.639 3.361 7 O -0.516 6.516 8 N -0.707 5.707 9 C 0.144 3.856 10 H 0.122 0.878 11 C 0.101 3.899 12 N -0.622 5.622 13 C 0.548 3.452 14 O -0.511 6.511 15 C -0.118 4.118 16 S -0.140 6.140 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.097 3.903 20 N -0.879 5.879 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.072 3.928 26 C 0.086 3.914 27 H 0.083 0.917 28 O -0.550 6.550 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.407 0.593 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.271 0.729 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.867 22.440 -13.030 32.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.012 4.012 3 C -0.205 4.205 4 C -0.069 4.069 5 C -0.230 4.230 6 C 0.426 3.574 7 O -0.392 6.392 8 N -0.358 5.358 9 C 0.038 3.962 10 H 0.139 0.861 11 C -0.024 4.024 12 N -0.361 5.361 13 C 0.337 3.663 14 O -0.384 6.384 15 C -0.269 4.269 16 S 0.086 5.914 17 C -0.670 4.670 18 H 0.106 0.894 19 C -0.112 4.112 20 N -0.516 5.516 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.053 4.053 26 C 0.026 3.974 27 H 0.101 0.899 28 O -0.355 6.355 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.242 0.758 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -16.506 23.650 -13.280 31.751 hybrid contribution -0.945 -1.433 0.323 1.746 sum -17.450 22.218 -12.957 31.081 Atomic orbital electron populations 1.21847 0.92578 1.02897 1.03031 1.18560 0.96370 0.95444 0.90804 1.21865 1.01942 0.93787 1.02955 1.22669 0.94066 0.96331 0.93825 1.20530 1.03935 1.02180 0.96356 1.14634 0.78900 0.81195 0.82654 1.90896 1.39077 1.66188 1.42994 1.45635 1.57088 1.09180 1.23886 1.21964 0.91644 0.93646 0.88910 0.86064 1.22274 0.96477 0.84600 0.99033 1.48245 1.14852 1.18384 1.54607 1.20055 0.81542 0.84464 0.80256 1.90731 1.28213 1.76233 1.43236 1.23261 1.05377 0.95149 1.03066 1.84841 1.16637 1.18759 1.71172 1.22293 1.05484 1.01717 1.37501 0.89359 1.24701 0.98557 0.93958 0.94001 1.69933 1.35932 1.06684 1.39002 0.86743 0.84057 0.78897 0.82211 1.19154 1.19888 1.15936 1.23000 0.83184 1.01191 0.97904 1.23159 0.86543 0.94029 0.93704 0.89938 1.86554 1.40433 1.37860 1.70685 0.91908 0.91019 0.91884 0.87856 0.91870 0.91828 0.91093 0.75796 0.90563 0.89955 0.88384 0.88472 0.91900 0.89681 0.89161 0.76443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 9.15 37.16 0.34 -0.17 16 2 C 0.01 0.03 3.30 -93.41 -0.31 -0.28 16 3 C -0.15 -0.63 9.15 37.16 0.34 -0.29 16 4 C -0.07 -0.54 12.56 -37.12 -0.47 -1.00 16 5 C -0.23 -2.29 13.61 -38.84 -0.53 -2.82 16 6 C 0.64 7.38 7.65 -14.34 -0.11 7.27 16 7 O -0.52 -7.89 16.73 5.26 0.09 -7.80 16 8 N -0.71 -6.20 5.09 -54.46 -0.28 -6.48 16 9 C 0.14 1.39 3.05 -66.10 -0.20 1.19 16 10 H 0.12 1.37 7.55 -51.93 -0.39 0.98 16 11 C 0.10 1.21 6.62 -3.06 -0.02 1.19 16 12 N -0.62 -8.26 3.33 -170.52 -0.57 -8.83 16 13 C 0.55 9.88 7.87 -10.99 -0.09 9.79 16 14 O -0.51 -11.23 16.19 5.55 0.09 -11.14 16 15 C -0.12 -2.24 5.16 36.01 0.19 -2.06 16 16 S -0.14 -3.53 18.55 -107.50 -1.99 -5.53 16 17 C -0.52 -14.84 10.04 30.94 0.31 -14.53 16 18 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 19 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 20 N -0.88 -26.22 13.97 55.49 0.78 -25.44 16 21 Si 0.86 21.64 27.74 -169.99 -4.71 16.92 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 25 C 0.07 0.66 6.43 -2.53 -0.02 0.64 16 26 C 0.09 0.64 4.06 -24.58 -0.10 0.54 16 27 H 0.08 0.48 8.01 -51.93 -0.42 0.06 16 28 O -0.55 -3.86 13.47 -35.23 -0.47 -4.34 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.41 2.47 8.53 -40.82 -0.35 2.12 16 37 H 0.08 0.93 8.03 -51.93 -0.42 0.52 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 40 H 0.10 1.68 7.85 -51.92 -0.41 1.27 16 41 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.09 0.73 7.48 -51.93 -0.39 0.34 16 44 H 0.39 1.06 9.12 45.56 0.42 1.48 16 LS Contribution 394.48 15.07 5.94 5.94 Total: -1.00 -37.69 394.48 -7.64 -45.33 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -5.76 Total: -0.82 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -0.76 Total: 2.17 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: -0.07 Total: -40.75 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.30 Total: -23.28 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.92 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.69 -7.64 -45.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489336429.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.616 kcal (2) G-P(sol) polarization free energy of solvation -37.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds