Wall clock time and date at job start Sat Apr 11 2020 05:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50694 * 120.00153 * 2 1 4 4 H 1.09001 * 110.67480 * 357.03840 * 3 2 1 5 5 O 1.44427 * 110.65661 * 234.06861 * 3 2 1 6 6 C 1.43741 * 107.00374 * 201.48124 * 5 3 2 7 7 C 1.54099 * 107.29224 * 26.48840 * 6 5 3 8 8 C 1.54814 * 104.18955 * 357.97034 * 7 6 5 9 9 H 1.08993 * 110.90829 * 97.35460 * 8 7 6 10 10 C 1.50704 * 110.90490 * 220.92369 * 8 7 6 11 11 O 1.21284 * 119.99734 * 115.67330 * 10 8 7 12 12 N 1.34779 * 119.99991 * 295.66451 * 10 8 7 13 13 C 1.46491 * 119.99880 * 180.02562 * 12 10 8 14 14 C 1.53503 * 114.20774 * 205.00140 * 13 12 10 15 15 N 1.47066 * 87.98596 * 220.34520 * 14 13 12 16 16 C 1.34780 * 136.05524 * 207.08426 * 15 14 13 17 17 O 1.21278 * 119.99552 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.99850 * 180.02562 * 16 15 14 19 19 S 1.80998 * 109.46884 * 180.02562 * 18 16 15 20 20 C 1.76202 * 100.00018 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99470 * 359.97438 * 20 19 18 22 22 C 1.38792 * 120.00215 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99998 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00224 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46885 * 60.00124 * 24 22 20 26 26 H 1.48501 * 109.47264 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47388 * 300.00565 * 24 22 20 28 28 C 1.47060 * 87.88579 * 27.11915 * 15 14 13 29 29 H 1.07996 * 120.00031 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.99807 * 180.02562 * 1 2 3 31 31 H 1.08007 * 119.99745 * 180.02562 * 2 1 3 32 32 H 1.08994 * 109.87854 * 267.06653 * 6 5 3 33 33 H 1.08997 * 109.99990 * 145.98156 * 6 5 3 34 34 H 1.08998 * 110.48899 * 239.29486 * 7 6 5 35 35 H 1.08998 * 110.49028 * 116.64680 * 7 6 5 36 36 H 0.96999 * 119.99329 * 0.02562 * 12 10 8 37 37 H 1.08999 * 113.41382 * 338.20274 * 13 12 10 38 38 H 1.09000 * 113.46355 * 105.56471 * 14 13 12 39 39 H 1.09003 * 113.46309 * 335.12917 * 14 13 12 40 40 H 1.09009 * 109.46818 * 299.99524 * 18 16 15 41 41 H 1.08991 * 109.47413 * 59.99670 * 18 16 15 42 42 H 0.97000 * 120.00107 * 180.02562 * 23 22 20 43 43 H 1.09006 * 113.47077 * 87.66003 * 28 15 14 44 44 H 1.09003 * 113.47044 * 218.03568 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3739 2.1476 -0.0527 5 8 3.0050 1.3497 -1.0943 6 6 4.0012 2.3278 -0.7520 7 6 4.0588 2.4041 0.7860 8 6 2.9646 1.4150 1.2563 9 1 3.3978 0.4476 1.5101 10 6 2.1948 1.9794 2.4225 11 8 1.0133 2.2272 2.3062 12 7 2.8194 2.2086 3.5947 13 6 2.0710 2.7567 4.7284 14 6 2.9349 3.5159 5.7450 15 7 2.1358 2.8933 6.8111 16 6 1.7893 3.2095 8.0747 17 8 2.1761 4.2478 8.5677 18 6 0.9222 2.2722 8.8751 19 16 0.6347 2.9723 10.5193 20 6 -0.3761 1.7091 11.2173 21 1 -0.6299 0.8366 10.6336 22 6 -0.8460 1.8353 12.5171 23 7 -0.5370 2.8990 13.2283 24 14 -1.9182 0.4965 13.2569 25 1 -1.1703 -0.7864 13.2688 26 1 -2.2863 0.8684 14.6466 27 1 -3.1509 0.3432 12.4430 28 6 1.8818 1.7737 5.8921 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 3.7229 3.2990 -1.1610 33 1 4.9717 2.0247 -1.1447 34 1 3.8318 3.4142 1.1267 35 1 5.0380 2.0897 1.1472 36 1 3.7644 2.0106 3.6874 37 1 1.1619 3.2814 4.4344 38 1 2.8185 4.5983 5.6910 39 1 3.9792 3.2032 5.7463 40 1 -0.0324 2.1367 8.3664 41 1 1.4220 1.3086 8.9724 42 1 -0.8651 2.9871 14.1369 43 1 2.6455 0.9970 5.9326 44 1 0.8702 1.3740 5.9639 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001530654038.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:11 Heat of formation + Delta-G solvation = -50.956113 kcal Electronic energy + Delta-G solvation = -26184.632310 eV Core-core repulsion = 22230.547110 eV Total energy + Delta-G solvation = -3954.085200 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.17976 -40.28583 -38.81360 -37.56153 -34.46530 -34.13864 -32.71471 -32.45246 -30.37771 -29.07901 -27.75620 -26.19050 -25.48184 -24.34990 -22.86650 -21.84251 -20.86749 -20.41923 -19.15805 -17.98092 -17.76477 -17.14623 -16.75144 -16.67221 -16.20436 -15.80248 -15.55269 -14.97208 -14.82247 -14.65775 -14.24361 -14.14640 -14.05435 -13.87147 -13.57806 -13.03360 -12.99296 -12.87125 -12.71497 -12.52514 -12.35558 -11.99578 -11.86917 -11.56668 -11.40200 -11.35756 -11.06322 -11.05252 -10.79387 -10.37487 -10.18806 -9.86362 -9.79221 -9.60854 -9.44509 -9.08227 -8.75128 -8.28614 -6.54012 -6.23767 -3.95263 1.80843 2.09883 2.34659 2.79391 3.03152 3.22372 3.23407 3.27691 3.47616 3.53336 3.85964 4.00586 4.04411 4.17901 4.19212 4.45169 4.48038 4.59638 4.64281 4.77295 4.82548 4.84025 4.89173 5.11321 5.11529 5.15709 5.19925 5.28791 5.32690 5.38899 5.41009 5.50997 5.54019 5.58335 5.82867 5.86588 6.03524 6.10036 6.22639 6.28054 6.45439 6.95183 7.57149 7.70866 7.71881 8.32821 8.43135 9.21294 10.83608 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020646 B = 0.001891 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.887220 B =14801.426331 C =15895.928027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.162 4.162 3 C 0.127 3.873 4 H 0.088 0.912 5 O -0.368 6.368 6 C 0.047 3.953 7 C -0.148 4.148 8 C -0.139 4.139 9 H 0.116 0.884 10 C 0.529 3.471 11 O -0.525 6.525 12 N -0.715 5.715 13 C 0.109 3.891 14 C 0.098 3.902 15 N -0.650 5.650 16 C 0.567 3.433 17 O -0.510 6.510 18 C -0.145 4.145 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.920 3.080 25 H -0.274 1.274 26 H -0.282 1.282 27 H -0.274 1.274 28 C 0.087 3.913 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.114 0.886 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.404 0.596 37 H 0.134 0.866 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.269 0.731 43 H 0.086 0.914 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.709 -4.950 -29.305 31.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.180 4.180 3 C 0.069 3.931 4 H 0.106 0.894 5 O -0.288 6.288 6 C -0.030 4.030 7 C -0.186 4.186 8 C -0.161 4.161 9 H 0.134 0.866 10 C 0.315 3.685 11 O -0.400 6.400 12 N -0.367 5.367 13 C 0.003 3.997 14 C -0.026 4.026 15 N -0.389 5.389 16 C 0.357 3.643 17 O -0.383 6.383 18 C -0.295 4.295 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.746 3.254 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.038 4.038 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.132 0.868 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.239 0.761 37 H 0.151 0.849 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.104 0.896 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.318 -3.166 -28.408 30.389 hybrid contribution -0.470 -2.168 0.299 2.238 sum 9.848 -5.334 -28.108 30.257 Atomic orbital electron populations 1.23954 0.95736 1.02506 0.96638 1.22543 0.95752 0.96737 1.02956 1.22006 0.90426 0.97382 0.83246 0.89412 1.88957 1.38435 1.60315 1.41053 1.23138 0.93051 0.93088 0.93692 1.22977 0.98984 0.99945 0.96653 1.22922 0.97127 1.01341 0.94716 0.86630 1.20218 0.87607 0.77429 0.83236 1.90750 1.15465 1.50750 1.83058 1.45804 1.13541 1.65913 1.11430 1.22902 0.97310 0.95752 0.83743 1.23195 0.95901 1.00252 0.83302 1.49337 1.53214 1.23948 1.12407 1.19941 0.79755 0.86757 0.77873 1.90727 1.54393 1.25555 1.67640 1.23478 1.00955 1.01532 1.03542 1.85399 1.66355 1.29668 1.01830 1.22808 1.36528 1.07429 1.01659 0.90933 1.24996 0.96189 0.96454 0.95925 1.70006 1.43137 1.26963 1.10144 0.86209 0.80182 0.80939 0.78085 1.19925 1.20776 1.19895 1.23456 1.03058 0.91658 0.85625 0.87940 0.87805 0.86786 0.91916 0.89292 0.89844 0.89226 0.76097 0.84866 0.89611 0.89799 0.89121 0.89228 0.92082 0.89617 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 14.33 29.02 0.42 -0.76 16 2 C -0.16 -1.27 9.24 -36.03 -0.33 -1.60 16 3 C 0.13 1.01 2.76 -26.83 -0.07 0.93 16 4 H 0.09 0.81 7.19 -51.93 -0.37 0.44 16 5 O -0.37 -3.08 11.21 -35.23 -0.39 -3.47 16 6 C 0.05 0.24 7.70 37.73 0.29 0.53 16 7 C -0.15 -0.57 6.58 -25.20 -0.17 -0.73 16 8 C -0.14 -0.80 2.94 -89.76 -0.26 -1.06 16 9 H 0.12 0.50 8.05 -51.93 -0.42 0.08 16 10 C 0.53 4.13 7.04 -10.98 -0.08 4.05 16 11 O -0.53 -6.17 15.36 5.55 0.09 -6.08 16 12 N -0.71 -4.21 5.37 -53.62 -0.29 -4.50 16 13 C 0.11 0.91 4.61 -67.81 -0.31 0.60 16 14 C 0.10 0.94 8.38 -8.51 -0.07 0.87 16 15 N -0.65 -8.93 3.69 -185.24 -0.68 -9.61 16 16 C 0.57 10.90 8.10 -10.98 -0.09 10.81 16 17 O -0.51 -11.84 16.64 5.56 0.09 -11.74 16 18 C -0.14 -2.98 5.98 36.01 0.22 -2.76 16 19 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 20 C -0.54 -15.29 9.50 30.94 0.29 -15.00 16 21 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 24 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 28 C 0.09 0.85 8.23 -8.51 -0.07 0.78 16 29 H 0.10 0.85 7.87 -52.49 -0.41 0.44 16 30 H 0.10 0.65 8.06 -52.48 -0.42 0.23 16 31 H 0.11 0.77 8.06 -52.48 -0.42 0.34 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.33 7.85 -51.93 -0.41 -0.08 16 35 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 36 H 0.40 1.22 8.76 -40.82 -0.36 0.86 16 37 H 0.13 1.36 7.45 -51.93 -0.39 0.97 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.62 8.13 -51.93 -0.42 0.19 16 40 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 41 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 390.48 15.07 5.88 5.88 Total: -1.00 -37.20 390.48 -8.69 -45.89 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -6.55 Total: -2.18 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -0.34 Total: -1.34 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: -0.24 Total: -39.52 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.22 Total: -21.30 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.20 -8.69 -45.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530654038.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.066 kcal (2) G-P(sol) polarization free energy of solvation -37.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds